Wall clock time and date at job start Tue Mar 31 2020 13:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00282 * 2 1 4 4 H 1.48494 * 109.47340 * 91.18304 * 3 2 1 5 5 H 1.48507 * 109.46971 * 211.17684 * 3 2 1 6 6 H 1.48499 * 109.47320 * 331.17790 * 3 2 1 7 7 C 1.38815 * 119.99531 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00616 * 16.90932 * 7 2 1 9 9 N 1.36936 * 119.99981 * 196.91557 * 7 2 1 10 10 C 1.46928 * 120.63269 * 31.20182 * 9 7 2 11 11 C 1.53190 * 108.77407 * 126.37107 * 10 9 7 12 12 C 1.53038 * 109.31045 * 54.64010 * 11 10 9 13 13 C 1.53035 * 109.53721 * 298.63055 * 12 11 10 14 14 C 1.46929 * 120.63121 * 210.92695 * 9 7 2 15 15 H 1.09004 * 109.58265 * 113.83913 * 14 9 7 16 16 C 1.53003 * 109.58369 * 353.41793 * 14 9 7 17 17 N 1.46492 * 109.47542 * 60.25704 * 16 14 9 18 18 C 1.34770 * 120.00257 * 180.02562 * 17 16 14 19 19 O 1.21602 * 120.00302 * 359.97438 * 18 17 16 20 20 C 1.47434 * 120.00096 * 180.02562 * 18 17 16 21 21 C 1.41283 * 126.41478 * 0.02562 * 20 18 17 22 22 N 1.30448 * 108.02549 * 179.97438 * 21 20 18 23 23 N 1.39938 * 108.89696 * 0.02562 * 22 21 20 24 24 C 1.46495 * 125.75818 * 180.02562 * 23 22 21 25 25 C 1.53009 * 109.46808 * 304.96979 * 24 23 22 26 26 F 1.39895 * 109.46783 * 180.02562 * 25 24 23 27 27 C 1.34274 * 108.48657 * 359.74811 * 23 22 21 28 28 H 0.97003 * 119.99506 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.59041 * 246.16054 * 10 9 7 30 30 H 1.08999 * 109.58318 * 6.44294 * 10 9 7 31 31 H 1.09004 * 109.49605 * 174.59106 * 11 10 9 32 32 H 1.08997 * 109.49641 * 294.68338 * 11 10 9 33 33 H 1.08998 * 109.46456 * 58.65529 * 12 11 10 34 34 H 1.09008 * 109.45767 * 178.62387 * 12 11 10 35 35 H 1.08999 * 109.49737 * 181.32104 * 13 12 11 36 36 H 1.09008 * 109.50084 * 301.38194 * 13 12 11 37 37 H 1.09000 * 109.46495 * 180.25736 * 16 14 9 38 38 H 1.09000 * 109.46689 * 300.25271 * 16 14 9 39 39 H 0.97005 * 119.99924 * 359.97438 * 17 16 14 40 40 H 1.07997 * 125.98895 * 359.97438 * 21 20 18 41 41 H 1.08992 * 109.47202 * 64.96793 * 24 23 22 42 42 H 1.09000 * 109.47306 * 184.97878 * 24 23 22 43 43 H 1.08993 * 109.46969 * 300.00424 * 25 24 23 44 44 H 1.09000 * 109.46453 * 60.00377 * 25 24 23 45 45 H 1.07995 * 126.28451 * 180.24458 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.5228 2.0319 1.3997 5 1 3.5352 1.4473 -0.7248 6 1 1.4356 2.6597 -0.6750 7 6 2.0102 -1.2022 0.0005 8 1 1.5052 -2.1174 -0.2711 9 7 3.3351 -1.2278 0.3456 10 6 3.8743 -0.2671 1.3177 11 6 4.5950 -1.0398 2.4269 12 6 5.6470 -1.9589 1.8019 13 6 4.9612 -2.9676 0.8777 14 6 4.2434 -2.2205 -0.2447 15 1 4.9781 -1.7158 -0.8722 16 6 3.4403 -3.2132 -1.0876 17 7 2.7482 -2.4951 -2.1606 18 6 1.9746 -3.1703 -3.0335 19 8 1.8513 -4.3757 -2.9308 20 6 1.2785 -2.4476 -4.1137 21 6 1.3267 -1.0571 -4.3592 22 7 0.5820 -0.8049 -5.4001 23 7 0.0293 -2.0042 -5.8633 24 6 -0.8649 -2.1462 -7.0149 25 6 -2.0720 -1.2223 -6.8402 26 9 -2.9263 -1.3584 -7.9396 27 6 0.4619 -3.0036 -5.0778 28 1 -0.4849 0.8401 -0.0004 29 1 4.5783 0.4001 0.8203 30 1 3.0588 0.3158 1.7461 31 1 5.0816 -0.3367 3.1030 32 1 3.8726 -1.6382 2.9819 33 1 6.3549 -1.3622 1.2266 34 1 6.1781 -2.4919 2.5906 35 1 5.7084 -3.6368 0.4512 36 1 4.2357 -3.5484 1.4474 37 1 4.1153 -3.9513 -1.5208 38 1 2.7082 -3.7168 -0.4562 39 1 2.8462 -1.5335 -2.2424 40 1 1.8826 -0.3303 -3.7856 41 1 -0.3301 -1.8770 -7.9256 42 1 -1.2054 -3.1793 -7.0852 43 1 -2.6068 -1.4915 -5.9294 44 1 -1.7315 -0.1893 -6.7698 45 1 0.2145 -4.0499 -5.1802 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024516807.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:36 Heat of formation + Delta-G solvation = 13.488632 kcal Electronic energy + Delta-G solvation = -28184.452950 eV Core-core repulsion = 24153.757146 eV Total energy + Delta-G solvation = -4030.695804 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -47.98419 -41.18824 -38.94683 -37.76430 -34.30184 -34.13153 -33.04138 -31.02634 -30.71036 -30.27504 -29.01732 -26.16250 -24.77118 -23.81702 -22.67982 -22.29421 -20.86017 -20.50379 -19.69348 -19.21895 -17.84279 -16.72541 -16.61364 -16.17148 -15.68024 -15.60024 -15.28178 -15.04440 -14.86397 -14.60074 -14.02506 -13.75297 -13.70185 -13.62514 -13.31639 -13.21552 -12.93533 -12.60370 -12.46011 -12.11417 -11.95112 -11.73727 -11.63505 -11.30714 -11.24957 -10.82918 -10.80402 -10.63621 -10.43277 -10.18968 -9.94620 -9.59463 -9.48058 -9.47703 -9.23897 -8.70102 -8.55775 -8.10073 -6.94124 -5.96738 -3.38502 1.70777 2.26330 2.48053 3.27007 3.42175 3.45181 3.85523 4.02567 4.11308 4.31894 4.47535 4.68609 4.72778 4.81403 4.87768 4.97227 5.18897 5.23947 5.33792 5.41124 5.44573 5.51502 5.54719 5.64690 5.76621 5.84923 5.98859 6.00807 6.12772 6.21519 6.27213 6.39194 6.44672 6.47704 6.57308 6.61433 6.69797 6.76726 6.85251 6.99283 7.23758 7.65518 7.94471 8.33502 8.36936 8.90639 8.98484 9.67777 10.06286 11.17642 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.016306 B = 0.003650 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.744310 B = 7669.457584 C = 8875.824125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.030 3.970 3 Si 0.877 3.123 4 H -0.289 1.289 5 H -0.271 1.271 6 H -0.305 1.305 7 C -0.262 4.262 8 H 0.095 0.905 9 N -0.604 5.604 10 C 0.125 3.875 11 C -0.136 4.136 12 C -0.108 4.108 13 C -0.129 4.129 14 C 0.163 3.837 15 H 0.036 0.964 16 C 0.138 3.862 17 N -0.689 5.689 18 C 0.591 3.409 19 O -0.573 6.573 20 C -0.270 4.270 21 C 0.100 3.900 22 N -0.303 5.303 23 N -0.372 5.372 24 C 0.107 3.893 25 C 0.051 3.949 26 F -0.210 7.210 27 C 0.120 3.880 28 H 0.262 0.738 29 H 0.023 0.977 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.409 0.591 40 H 0.191 0.809 41 H 0.097 0.903 42 H 0.108 0.892 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.320 -3.544 -9.055 10.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.170 4.170 3 Si 0.708 3.292 4 H -0.216 1.216 5 H -0.196 1.196 6 H -0.233 1.233 7 C -0.390 4.390 8 H 0.112 0.888 9 N -0.330 5.330 10 C -0.001 4.001 11 C -0.175 4.175 12 C -0.146 4.146 13 C -0.169 4.169 14 C 0.057 3.943 15 H 0.054 0.946 16 C 0.013 3.987 17 N -0.338 5.338 18 C 0.378 3.622 19 O -0.455 6.455 20 C -0.285 4.285 21 C -0.088 4.088 22 N -0.123 5.123 23 N -0.152 5.152 24 C -0.015 4.015 25 C -0.005 4.005 26 F -0.191 7.191 27 C -0.029 4.029 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.246 0.754 40 H 0.208 0.792 41 H 0.115 0.885 42 H 0.127 0.873 43 H 0.103 0.897 44 H 0.111 0.889 45 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 3.520 -3.392 -9.924 11.063 hybrid contribution 0.627 0.970 0.727 1.365 sum 4.147 -2.422 -9.197 10.376 Atomic orbital electron populations 1.69809 1.05646 1.26382 1.52623 1.25325 0.95078 0.97221 0.99373 0.87079 0.79656 0.85067 0.77411 1.21620 1.19597 1.23327 1.19010 0.83211 0.94622 1.42191 0.88805 1.44419 1.06531 1.36075 1.45932 1.21390 0.96797 0.92057 0.89824 1.22004 0.98091 0.98819 0.98597 1.21366 0.97488 0.97461 0.98271 1.21866 0.99247 0.97804 0.97952 1.20661 0.91485 0.89937 0.92230 0.94605 1.21241 0.95254 0.93835 0.88323 1.45673 1.47617 1.11969 1.28553 1.17102 0.78338 0.86080 0.80656 1.90697 1.65082 1.14324 1.75416 1.20356 1.11053 0.93834 1.03238 1.24151 0.95870 0.95362 0.93437 1.77132 1.15603 1.03881 1.15664 1.48178 1.37398 1.05424 1.24232 1.22193 0.89947 1.02316 0.87077 1.22197 0.89018 1.02299 0.86987 1.92782 1.72120 1.97434 1.56785 1.22891 0.94675 0.94972 0.90378 0.92817 0.95887 0.90972 0.93122 0.91814 0.92767 0.93094 0.92509 0.91613 0.92428 0.91235 0.75395 0.79198 0.88486 0.87337 0.89728 0.88910 0.79685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.00 13.97 55.49 0.78 -25.22 16 2 C 0.03 0.78 5.27 -17.43 -0.09 0.69 16 3 Si 0.88 20.73 24.32 -169.99 -4.13 16.59 16 4 H -0.29 -6.78 6.51 56.52 0.37 -6.42 16 5 H -0.27 -6.14 6.74 56.52 0.38 -5.76 16 6 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 7 C -0.26 -6.51 7.44 -15.06 -0.11 -6.62 16 8 H 0.09 2.59 6.04 -52.49 -0.32 2.27 16 9 N -0.60 -12.83 2.72 -165.03 -0.45 -13.28 16 10 C 0.12 2.52 4.20 -3.71 -0.02 2.51 16 11 C -0.14 -2.27 6.08 -26.61 -0.16 -2.44 16 12 C -0.11 -1.58 5.88 -26.69 -0.16 -1.73 16 13 C -0.13 -1.97 5.34 -26.84 -0.14 -2.11 16 14 C 0.16 2.89 2.99 -67.82 -0.20 2.69 16 15 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 16 C 0.14 2.50 4.42 -4.04 -0.02 2.48 16 17 N -0.69 -12.99 3.83 -61.39 -0.24 -13.22 16 18 C 0.59 11.47 7.81 -12.52 -0.10 11.37 16 19 O -0.57 -12.42 16.90 5.28 0.09 -12.33 16 20 C -0.27 -4.61 6.13 -105.07 -0.64 -5.25 16 21 C 0.10 1.65 11.50 -16.98 -0.20 1.45 16 22 N -0.30 -4.75 12.33 30.86 0.38 -4.37 16 23 N -0.37 -4.83 3.65 -60.81 -0.22 -5.05 16 24 C 0.11 0.95 6.94 -4.04 -0.03 0.92 16 25 C 0.05 0.48 7.73 37.16 0.29 0.77 16 26 F -0.21 -2.20 17.36 2.25 0.04 -2.16 16 27 C 0.12 1.70 11.25 -16.56 -0.19 1.51 16 28 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.02 0.46 7.05 -51.93 -0.37 0.10 16 30 H 0.07 1.63 4.64 -51.93 -0.24 1.39 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.07 8.14 -51.92 -0.42 0.64 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 1.43 7.42 -51.93 -0.39 1.05 16 39 H 0.41 7.75 6.35 -40.82 -0.26 7.49 16 40 H 0.19 2.97 7.50 -52.49 -0.39 2.57 16 41 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.11 0.68 8.06 -51.93 -0.42 0.27 16 43 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.19 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 361.42 15.07 5.45 5.45 Total: -1.00 -31.58 361.42 -6.72 -38.30 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -6.64 Total: 9.05 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: -1.77 Total: 6.25 kcal Atomic # 7 Polarization: -61.39 SS G_CDS: 0.25 Total: -61.14 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.09 Total: -12.33 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.13 Total: 16.59 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.58 -6.72 -38.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024516807.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.786 kcal (2) G-P(sol) polarization free energy of solvation -31.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds