Wall clock time and date at job start Tue Mar 31 2020 14:32:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 N 1.30376 * 125.96318 * 2 1
4 4 N 1.39920 * 109.01662 * 180.02562 * 3 2 1
5 5 C 1.46498 * 125.73852 * 179.97438 * 4 3 2
6 6 C 1.34409 * 108.51790 * 359.72773 * 4 3 2
7 7 F 1.35103 * 126.34754 * 180.26780 * 6 4 3
8 8 C 1.38506 * 107.30889 * 0.43476 * 6 4 3
9 9 C 1.47172 * 126.45550 * 179.83343 * 8 6 4
10 10 O 1.21626 * 120.00130 * 269.68543 * 9 8 6
11 11 N 1.34781 * 119.99932 * 89.68606 * 9 8 6
12 12 C 1.46929 * 120.62722 * 359.71707 * 11 9 8
13 13 C 1.52759 * 109.00699 * 233.58278 * 12 11 9
14 14 C 1.53049 * 109.38373 * 305.59028 * 13 12 11
15 15 C 1.53037 * 109.53630 * 61.24360 * 14 13 12
16 16 H 1.08996 * 109.53104 * 58.59581 * 15 14 13
17 17 N 1.46501 * 109.50024 * 178.68283 * 15 14 13
18 18 C 1.46496 * 119.99667 * 59.83522 * 17 15 14
19 19 C 1.36929 * 120.00177 * 239.83769 * 17 15 14
20 20 H 1.08003 * 120.00052 * 22.05597 * 19 17 15
21 21 C 1.38810 * 120.00057 * 202.06122 * 19 17 15
22 22 N 1.31623 * 120.00209 * 12.42920 * 21 19 17
23 23 Si 1.86803 * 119.99958 * 192.42484 * 21 19 17
24 24 H 1.48493 * 109.47311 * 0.02562 * 23 21 19
25 25 H 1.48502 * 109.47090 * 120.00113 * 23 21 19
26 26 H 1.48504 * 109.47351 * 239.99829 * 23 21 19
27 27 C 1.46921 * 120.63071 * 179.97438 * 11 9 8
28 28 H 1.09000 * 109.46834 * 269.99592 * 1 2 3
29 29 H 1.08998 * 109.47251 * 29.99425 * 1 2 3
30 30 H 1.08998 * 109.47070 * 149.99270 * 1 2 3
31 31 H 1.09003 * 109.47582 * 90.02523 * 5 4 3
32 32 H 1.09002 * 109.46991 * 210.02624 * 5 4 3
33 33 H 1.09001 * 109.47197 * 330.02138 * 5 4 3
34 34 H 1.08994 * 109.59096 * 353.42410 * 12 11 9
35 35 H 1.09006 * 109.58373 * 113.84884 * 12 11 9
36 36 H 1.09003 * 109.56569 * 185.55661 * 13 12 11
37 37 H 1.09002 * 109.38817 * 65.51595 * 13 12 11
38 38 H 1.08997 * 109.46089 * 301.21768 * 14 13 12
39 39 H 1.09001 * 109.45683 * 181.25675 * 14 13 12
40 40 H 1.08996 * 109.47709 * 94.31033 * 18 17 15
41 41 H 1.09008 * 109.47082 * 214.30467 * 18 17 15
42 42 H 1.09001 * 109.47344 * 334.30370 * 18 17 15
43 43 H 0.96994 * 119.99936 * 179.97438 * 22 21 19
44 44 H 1.09002 * 109.58482 * 246.15852 * 27 11 9
45 45 H 1.08998 * 109.58850 * 6.57719 * 27 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2727 1.0553 0.0000
4 7 3.6111 0.6474 -0.0006
5 6 4.7762 1.5355 -0.0013
6 6 3.6480 -0.6962 0.0051
7 9 4.7577 -1.4667 0.0115
8 6 2.3375 -1.1444 -0.0007
9 6 1.8931 -2.5474 -0.0010
10 8 1.7091 -3.1268 -1.0545
11 7 1.6900 -3.1902 1.1661
12 6 1.9140 -2.5055 2.4466
13 6 2.8688 -3.3411 3.2973
14 6 2.3175 -4.7625 3.4320
15 6 2.2141 -5.4048 2.0468
16 1 3.1976 -5.4188 1.5773
17 7 1.7160 -6.7761 2.1795
18 6 0.4057 -7.0239 2.7861
19 6 2.4751 -7.8261 1.7367
20 1 3.5433 -7.7113 1.6258
21 6 1.8719 -9.0382 1.4304
22 7 0.5619 -9.1138 1.3274
23 14 2.9192 -10.5619 1.1641
24 1 4.3525 -10.2135 1.3358
25 1 2.5410 -11.6017 2.1545
26 1 2.6967 -11.0819 -0.2090
27 6 1.2459 -4.5906 1.1819
28 1 -0.3633 -0.0001 1.0277
29 1 -0.3634 0.8900 -0.5137
30 1 -0.3633 -0.8899 -0.5139
31 1 5.0661 1.7556 1.0262
32 1 5.6043 1.0480 -0.5159
33 1 4.5254 2.4636 -0.5148
34 1 2.3523 -1.5243 2.2646
35 1 0.9652 -2.3925 2.9713
36 1 2.9642 -2.8927 4.2862
37 1 3.8467 -3.3743 2.8169
38 1 1.3293 -4.7267 3.8905
39 1 2.9865 -5.3537 4.0573
40 1 -0.3502 -7.0907 2.0037
41 1 0.4347 -7.9600 3.3439
42 1 0.1576 -6.2057 3.4621
43 1 0.1404 -9.9607 1.1129
44 1 0.2417 -4.6507 1.6015
45 1 1.2436 -4.9848 0.1657
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001027664485.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:32:12
Heat of formation + Delta-G solvation = 32.020287 kcal
Electronic energy + Delta-G solvation = -28751.596966 eV
Core-core repulsion = 24721.704755 eV
Total energy + Delta-G solvation = -4029.892211 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 324.170 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-49.45438 -41.61417 -39.55006 -37.29945 -35.03923 -34.41039 -32.30737 -31.28032
-30.64325 -29.78026 -28.63388 -26.50165 -25.97553 -24.94227 -23.56217 -22.25261
-21.58797 -20.84477 -19.69343 -18.70573 -17.80197 -17.20204 -16.75703 -16.59431
-16.20997 -15.73655 -15.01684 -14.91637 -14.46580 -14.29878 -14.09256 -13.85063
-13.76308 -13.66029 -13.46210 -13.32655 -12.90723 -12.64840 -12.61721 -12.44093
-12.35057 -12.27251 -11.84566 -11.15378 -11.09870 -10.97289 -10.78796 -10.59174
-10.37295 -10.30409 -10.13634 -9.86126 -9.73360 -9.66695 -9.57791 -8.83323
-8.55590 -8.27593 -6.73085 -5.69237 -3.14738 1.15797 1.67406 2.07084
2.70583 3.31121 3.41591 3.48420 3.50567 3.63174 4.08992 4.51303
4.52763 4.68455 4.77877 4.84955 4.96396 5.00150 5.04935 5.20968
5.35122 5.39436 5.47701 5.54061 5.56121 5.61756 5.64799 5.79381
5.94905 6.03554 6.12832 6.16870 6.26463 6.41353 6.44533 6.53914
6.72089 6.81450 6.96506 7.02460 7.13145 7.41908 7.69354 7.75600
7.85292 8.40006 8.45121 9.26879 9.89358 10.37591 11.35609
Molecular weight = 324.17amu
Principal moments of inertia in cm(-1)
A = 0.019952 B = 0.003330 C = 0.003240
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1403.054308 B = 8405.378955 C = 8640.926757
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 C 0.131 3.869
3 N -0.273 5.273
4 N -0.377 5.377
5 C 0.094 3.906
6 C 0.289 3.711
7 F -0.086 7.086
8 C -0.276 4.276
9 C 0.592 3.408
10 O -0.529 6.529
11 N -0.595 5.595
12 C 0.113 3.887
13 C -0.131 4.131
14 C -0.132 4.132
15 C 0.168 3.832
16 H 0.064 0.936
17 N -0.592 5.592
18 C 0.162 3.838
19 C -0.254 4.254
20 H 0.069 0.931
21 C 0.003 3.997
22 N -0.906 5.906
23 Si 0.905 3.095
24 H -0.278 1.278
25 H -0.290 1.290
26 H -0.290 1.290
27 C 0.098 3.902
28 H 0.086 0.914
29 H 0.082 0.918
30 H 0.086 0.914
31 H 0.083 0.917
32 H 0.091 0.909
33 H 0.099 0.901
34 H 0.072 0.928
35 H 0.068 0.932
36 H 0.068 0.932
37 H 0.062 0.938
38 H 0.060 0.940
39 H 0.064 0.936
40 H 0.029 0.971
41 H 0.044 0.956
42 H -0.001 1.001
43 H 0.252 0.748
44 H 0.064 0.936
45 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.160 23.006 2.565 23.520
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.035 4.035
3 N -0.096 5.096
4 N -0.162 5.162
5 C -0.047 4.047
6 C 0.142 3.858
7 F -0.066 7.066
8 C -0.293 4.293
9 C 0.377 3.623
10 O -0.405 6.405
11 N -0.327 5.327
12 C -0.010 4.010
13 C -0.170 4.170
14 C -0.172 4.172
15 C 0.059 3.941
16 H 0.083 0.917
17 N -0.313 5.313
18 C 0.017 3.983
19 C -0.384 4.384
20 H 0.087 0.913
21 C -0.196 4.196
22 N -0.551 5.551
23 Si 0.735 3.265
24 H -0.204 1.204
25 H -0.217 1.217
26 H -0.217 1.217
27 C -0.025 4.025
28 H 0.105 0.895
29 H 0.101 0.899
30 H 0.104 0.896
31 H 0.101 0.899
32 H 0.109 0.891
33 H 0.118 0.882
34 H 0.090 0.910
35 H 0.086 0.914
36 H 0.087 0.913
37 H 0.081 0.919
38 H 0.078 0.922
39 H 0.083 0.917
40 H 0.047 0.953
41 H 0.063 0.937
42 H 0.018 0.982
43 H 0.062 0.938
44 H 0.082 0.918
45 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges 4.163 23.808 1.968 24.249
hybrid contribution 1.013 -1.808 -0.136 2.077
sum 5.177 22.000 1.832 22.675
Atomic orbital electron populations
1.20336 0.85156 1.04387 1.03875 1.22199 0.97217 0.87977 0.96148
1.77286 0.84121 1.21155 1.27026 1.48638 1.07242 1.02568 1.57764
1.22048 0.83731 0.94641 1.04258 1.17792 0.83479 0.81759 1.02726
1.91679 1.49587 1.71537 1.93762 1.19774 0.90299 0.95975 1.23205
1.17086 0.77572 0.83831 0.83860 1.90817 1.51468 1.67262 1.30979
1.48234 1.65871 1.13627 1.05018 1.21557 0.99595 0.95478 0.84375
1.21835 0.99062 0.96899 0.99218 1.22080 1.00979 0.94010 1.00109
1.20640 0.96227 0.85108 0.92125 0.91737 1.43950 1.19063 0.99503
1.68808 1.20797 0.86521 0.96197 0.94771 1.19277 0.90192 0.90090
1.38811 0.91319 1.25018 0.95702 0.98956 0.99895 1.70080 1.07856
1.24646 1.52533 0.86176 0.79662 0.83257 0.77403 1.20354 1.21674
1.21701 1.22611 0.98607 0.77670 1.03618 0.89524 0.89947 0.89565
0.89851 0.89056 0.88207 0.90956 0.91394 0.91305 0.91898 0.92159
0.91696 0.95291 0.93716 0.98233 0.93797 0.91781 0.88900
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.75 10.28 36.01 0.37 -0.37 16
2 C 0.13 1.61 7.26 -82.01 -0.60 1.02 16
3 N -0.27 -3.24 12.49 33.91 0.42 -2.82 16
4 N -0.38 -4.07 3.98 -67.94 -0.27 -4.34 16
5 C 0.09 0.55 11.43 59.85 0.68 1.23 16
6 C 0.29 3.78 8.57 -16.32 -0.14 3.64 16
7 F -0.09 -1.15 17.31 2.25 0.04 -1.11 16
8 C -0.28 -3.99 3.88 -104.97 -0.41 -4.39 16
9 C 0.59 10.37 7.24 -12.63 -0.09 10.28 16
10 O -0.53 -11.48 16.52 5.25 0.09 -11.40 16
11 N -0.59 -9.76 2.98 -174.37 -0.52 -10.28 16
12 C 0.11 1.45 6.31 -3.93 -0.02 1.42 16
13 C -0.13 -1.72 6.06 -26.83 -0.16 -1.88 16
14 C -0.13 -2.19 5.13 -26.69 -0.14 -2.33 16
15 C 0.17 3.46 2.74 -67.79 -0.19 3.28 16
16 H 0.06 1.42 7.86 -51.93 -0.41 1.01 16
17 N -0.59 -14.72 2.82 -173.32 -0.49 -15.21 16
18 C 0.16 3.91 7.91 59.84 0.47 4.38 16
19 C -0.25 -7.05 9.60 -15.06 -0.14 -7.19 16
20 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16
21 C 0.00 0.07 5.11 -17.43 -0.09 -0.02 16
22 N -0.91 -26.55 10.63 55.49 0.59 -25.96 16
23 Si 0.90 22.18 29.57 -169.99 -5.03 17.16 16
24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
25 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16
26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16
27 C 0.10 1.93 5.80 -3.69 -0.02 1.90 16
28 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16
29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16
30 H 0.09 0.90 8.01 -51.93 -0.42 0.49 16
31 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16
32 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16
33 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16
34 H 0.07 0.85 6.24 -51.93 -0.32 0.52 16
35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16
36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16
37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
38 H 0.06 0.98 6.71 -51.93 -0.35 0.64 16
39 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16
40 H 0.03 0.76 7.41 -51.93 -0.39 0.38 16
41 H 0.04 1.17 7.20 -51.92 -0.37 0.80 16
42 H 0.00 -0.02 6.45 -51.93 -0.33 -0.35 16
43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16
44 H 0.06 1.24 7.52 -51.93 -0.39 0.84 16
45 H 0.09 2.15 7.00 -51.93 -0.36 1.78 16
LS Contribution 368.74 15.07 5.56 5.56
Total: -1.00 -33.79 368.74 -6.78 -40.57
By element:
Atomic # 1 Polarization: 3.56 SS G_CDS: -6.69 Total: -3.14 kcal
Atomic # 6 Polarization: 11.45 SS G_CDS: -0.47 Total: 10.98 kcal
Atomic # 7 Polarization: -58.35 SS G_CDS: -0.26 Total: -58.61 kcal
Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.40 kcal
Atomic # 9 Polarization: -1.15 SS G_CDS: 0.04 Total: -1.11 kcal
Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.16 kcal
Total LS contribution 5.56 Total: 5.56 kcal
Total: -33.79 -6.78 -40.57 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001027664485.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.585 kcal
(2) G-P(sol) polarization free energy of solvation -33.790 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.795 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.775 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.565 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.020 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds