Wall clock time and date at job start Tue Mar 31 2020 13:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86805 * 119.99738 * 2 1 4 4 H 1.48500 * 109.46691 * 179.72473 * 3 2 1 5 5 H 1.48503 * 109.47032 * 299.72117 * 3 2 1 6 6 H 1.48494 * 109.47062 * 59.72467 * 3 2 1 7 7 C 1.38810 * 119.99810 * 179.72475 * 2 1 3 8 8 H 1.07999 * 119.99779 * 155.10382 * 7 2 1 9 9 N 1.36929 * 120.00233 * 335.09825 * 7 2 1 10 10 C 1.47424 * 125.65182 * 331.84059 * 9 7 2 11 11 C 1.54907 * 104.83588 * 204.09122 * 10 9 7 12 12 C 1.55155 * 101.58106 * 322.98622 * 11 10 9 13 13 C 1.47026 * 125.65011 * 151.52776 * 9 7 2 14 14 H 1.09008 * 109.88082 * 59.56305 * 13 9 7 15 15 C 1.53001 * 109.88016 * 298.39992 * 13 9 7 16 16 N 1.46500 * 109.47302 * 61.51176 * 15 13 9 17 17 C 1.34773 * 120.00122 * 186.19375 * 16 15 13 18 18 O 1.21282 * 119.99987 * 359.97438 * 17 16 15 19 19 C 1.50698 * 120.00289 * 179.97438 * 17 16 15 20 20 H 1.08998 * 110.37422 * 305.91985 * 19 17 16 21 21 O 1.43932 * 110.42317 * 183.54617 * 19 17 16 22 22 C 1.43766 * 109.64100 * 215.17130 * 21 19 17 23 23 C 1.53679 * 106.82634 * 1.34163 * 22 21 19 24 24 H 1.09005 * 109.74052 * 267.27731 * 23 22 21 25 25 C 1.51240 * 112.33139 * 144.99799 * 23 22 21 26 26 O 1.42699 * 111.49579 * 295.00558 * 25 23 22 27 27 C 1.43201 * 112.75732 * 299.56261 * 26 25 23 28 28 C 1.52760 * 108.43296 * 64.90812 * 27 26 25 29 29 C 1.53101 * 110.45683 * 300.07423 * 28 27 26 30 30 H 1.08993 * 113.39848 * 283.65631 * 29 28 27 31 31 H 0.97003 * 120.00035 * 174.41820 * 1 2 3 32 32 H 1.09004 * 110.36730 * 322.92980 * 10 9 7 33 33 H 1.08999 * 110.37071 * 85.13755 * 10 9 7 34 34 H 1.08999 * 111.00619 * 81.06130 * 11 10 9 35 35 H 1.09004 * 111.00163 * 204.87710 * 11 10 9 36 36 H 1.09001 * 110.71912 * 153.86399 * 12 11 10 37 37 H 1.09001 * 110.72641 * 277.14216 * 12 11 10 38 38 H 1.09002 * 109.46872 * 181.50928 * 15 13 9 39 39 H 1.08997 * 109.47151 * 301.50638 * 15 13 9 40 40 H 0.96999 * 119.99738 * 6.19548 * 16 15 13 41 41 H 1.08994 * 109.99143 * 120.68235 * 22 21 19 42 42 H 1.09007 * 109.98932 * 242.00264 * 22 21 19 43 43 H 1.09009 * 109.07216 * 55.52514 * 25 23 22 44 44 H 1.09002 * 109.07350 * 174.48317 * 25 23 22 45 45 H 1.08995 * 109.64492 * 305.22764 * 27 26 25 46 46 H 1.08996 * 109.81899 * 184.69498 * 27 26 25 47 47 H 1.09005 * 109.30122 * 179.77545 * 28 27 26 48 48 H 1.08993 * 109.14547 * 60.28148 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0067 5 1 1.8965 2.3935 -1.2159 6 1 1.8863 2.3994 1.2091 7 6 2.0102 -1.2021 0.0058 8 1 3.0149 -1.2475 -0.3878 9 7 1.4210 -2.3305 0.5105 10 6 0.3854 -2.3634 1.5591 11 6 0.5064 -3.7720 2.1921 12 6 0.8343 -4.6439 0.9514 13 6 1.7119 -3.7095 0.0919 14 1 2.7651 -3.9339 0.2609 15 6 1.3703 -3.8867 -1.3890 16 7 2.1988 -2.9846 -2.1926 17 6 1.9850 -2.8753 -3.5188 18 8 1.1070 -3.5242 -4.0470 19 6 2.8369 -1.9469 -4.3454 20 1 2.8201 -0.9413 -3.9252 21 8 2.3806 -1.9284 -5.7104 22 6 3.5061 -1.7907 -6.5943 23 6 4.7632 -1.7522 -5.7111 24 1 5.0168 -0.7183 -5.4765 25 6 5.9461 -2.4306 -6.3653 26 8 5.7178 -3.8287 -6.5371 27 6 5.4970 -4.5103 -5.2973 28 6 4.2005 -3.9865 -4.6822 29 6 4.2991 -2.4799 -4.4286 30 1 4.8987 -2.2264 -3.5544 31 1 -0.4850 -0.8361 -0.0817 32 1 0.5778 -1.5937 2.3067 33 1 -0.6031 -2.2264 1.1206 34 1 1.3183 -3.8054 2.9187 35 1 -0.4355 -4.0779 2.6475 36 1 1.3878 -5.5366 1.2427 37 1 -0.0768 -4.9114 0.4162 38 1 1.5630 -4.9178 -1.6854 39 1 0.3178 -3.6532 -1.5495 40 1 2.9013 -2.4659 -1.7702 41 1 3.5534 -2.6424 -7.2728 42 1 3.4220 -0.8647 -7.1633 43 1 6.1230 -1.9760 -7.3402 44 1 6.8285 -2.2876 -5.7416 45 1 6.3284 -4.3167 -4.6195 46 1 5.4113 -5.5823 -5.4750 47 1 4.0165 -4.4996 -3.7383 48 1 3.3752 -4.1836 -5.3663 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028047936.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:12 Heat of formation + Delta-G solvation = -106.547336 kcal Electronic energy + Delta-G solvation = -29850.227715 eV Core-core repulsion = 25905.494315 eV Total energy + Delta-G solvation = -3944.733400 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.05823 -38.92343 -37.88617 -37.19914 -33.94468 -33.07934 -32.87239 -32.02200 -29.82923 -29.12265 -28.31189 -25.62739 -25.09726 -24.01623 -23.51362 -22.45172 -20.56791 -19.84597 -19.65958 -19.40192 -17.66843 -17.00723 -16.68187 -16.33239 -15.93046 -15.65511 -15.45181 -15.22034 -14.89300 -14.27526 -14.12655 -13.85256 -13.74604 -13.37074 -13.12709 -13.03276 -12.80732 -12.61259 -12.32148 -12.14550 -12.10699 -11.80524 -11.67937 -11.22748 -11.12318 -10.79442 -10.76947 -10.63765 -10.54231 -10.40705 -10.30414 -10.19647 -10.05624 -9.91799 -9.60368 -9.55004 -9.01870 -8.52773 -8.29908 -6.97785 -6.15390 -3.35586 3.05773 3.40110 3.43321 3.46117 3.55141 3.68386 4.04502 4.10309 4.46444 4.48180 4.69238 4.81020 4.85492 5.06954 5.12610 5.15333 5.23108 5.26556 5.28323 5.32914 5.34123 5.40885 5.44857 5.49253 5.54039 5.65893 5.66980 5.75318 5.87933 5.93057 5.96337 5.97013 6.13232 6.16687 6.22401 6.34523 6.40624 6.46041 6.88583 6.89365 6.89910 6.93656 7.04110 7.14682 7.70818 8.19432 8.38473 8.83150 8.92687 9.69083 10.31648 11.12241 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.013517 B = 0.004428 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.000841 B = 6321.885032 C = 7421.006701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.017 4.017 3 Si 1.064 2.936 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.289 1.289 7 C -0.336 4.336 8 H 0.055 0.945 9 N -0.591 5.591 10 C 0.140 3.860 11 C -0.135 4.135 12 C -0.123 4.123 13 C 0.143 3.857 14 H 0.039 0.961 15 C 0.120 3.880 16 N -0.695 5.695 17 C 0.516 3.484 18 O -0.543 6.543 19 C 0.065 3.935 20 H 0.098 0.902 21 O -0.351 6.351 22 C 0.058 3.942 23 C -0.157 4.157 24 H 0.095 0.905 25 C 0.073 3.927 26 O -0.376 6.376 27 C 0.062 3.938 28 C -0.156 4.156 29 C -0.106 4.106 30 H 0.108 0.892 31 H 0.272 0.728 32 H 0.046 0.954 33 H 0.027 0.973 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.046 0.954 39 H 0.061 0.939 40 H 0.406 0.594 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.055 0.945 45 H 0.053 0.947 46 H 0.096 0.904 47 H 0.078 0.922 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.111 -6.580 -6.355 15.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.221 4.221 3 Si 0.894 3.106 4 H -0.217 1.217 5 H -0.220 1.220 6 H -0.215 1.215 7 C -0.464 4.464 8 H 0.072 0.928 9 N -0.316 5.316 10 C 0.015 3.985 11 C -0.174 4.174 12 C -0.161 4.161 13 C 0.035 3.965 14 H 0.057 0.943 15 C -0.006 4.006 16 N -0.348 5.348 17 C 0.300 3.700 18 O -0.420 6.420 19 C 0.004 3.996 20 H 0.115 0.885 21 O -0.269 6.269 22 C -0.019 4.019 23 C -0.176 4.176 24 H 0.114 0.886 25 C -0.004 4.004 26 O -0.294 6.294 27 C -0.015 4.015 28 C -0.194 4.194 29 C -0.125 4.125 30 H 0.126 0.874 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.045 0.955 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.244 0.756 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.114 0.886 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.114 0.886 47 H 0.096 0.904 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.133 -5.406 -6.940 14.190 hybrid contribution 0.535 -1.003 0.464 1.227 sum 11.668 -6.409 -6.477 14.804 Atomic orbital electron populations 1.70682 1.06724 1.30712 1.46139 1.25824 0.96522 1.01314 0.98471 0.83550 0.74307 0.75809 0.76940 1.21693 1.22028 1.21519 1.19407 0.96319 0.87370 1.43329 0.92787 1.44582 1.46835 1.00198 1.40026 1.21559 0.92861 0.93445 0.90617 1.22772 1.00409 0.97452 0.96735 1.22492 0.99625 0.97246 0.96747 1.21346 0.96952 0.87700 0.90478 0.94319 1.21890 0.95488 0.91119 0.92094 1.45878 1.37350 1.45130 1.06429 1.20066 0.84356 0.82752 0.82827 1.90657 1.33217 1.46068 1.72079 1.23123 0.92297 0.99380 0.84763 0.88458 1.88701 1.29461 1.94855 1.13880 1.23107 0.84116 1.01791 0.92874 1.22755 0.97381 1.01372 0.96054 0.88630 1.21936 0.95099 0.82001 1.01365 1.88090 1.92061 1.19447 1.29847 1.22578 0.95896 0.97158 0.85829 1.22213 0.99858 0.94423 1.02879 1.22889 0.95184 0.96124 0.98264 0.87412 0.91595 0.93547 0.95487 0.91896 0.91994 0.91800 0.91580 0.93556 0.92066 0.75576 0.90483 0.91064 0.88573 0.92656 0.92866 0.88616 0.90369 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.29 13.08 55.49 0.73 -25.57 16 2 C -0.02 -0.44 5.18 -17.43 -0.09 -0.53 16 3 Si 1.06 23.91 29.99 -169.99 -5.10 18.82 16 4 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.34 -8.37 8.13 -15.06 -0.12 -8.49 16 8 H 0.05 1.30 6.67 -52.49 -0.35 0.95 16 9 N -0.59 -13.51 2.89 -162.56 -0.47 -13.98 16 10 C 0.14 3.08 5.65 -2.53 -0.01 3.06 16 11 C -0.14 -2.28 7.09 -24.58 -0.17 -2.46 16 12 C -0.12 -1.97 6.49 -24.89 -0.16 -2.13 16 13 C 0.14 2.70 3.34 -66.94 -0.22 2.47 16 14 H 0.04 0.72 8.14 -51.92 -0.42 0.30 16 15 C 0.12 2.33 5.19 -4.04 -0.02 2.31 16 16 N -0.69 -13.28 4.80 -60.30 -0.29 -13.57 16 17 C 0.52 10.27 5.50 -10.99 -0.06 10.21 16 18 O -0.54 -12.84 16.52 -13.67 -0.23 -13.06 16 19 C 0.07 1.09 3.52 -26.36 -0.09 1.00 16 20 H 0.10 1.62 8.14 -51.93 -0.42 1.19 16 21 O -0.35 -6.22 10.21 -54.45 -0.56 -6.78 16 22 C 0.06 0.74 6.78 37.51 0.25 1.00 16 23 C -0.16 -1.66 2.98 -90.32 -0.27 -1.93 16 24 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 25 C 0.07 0.67 6.12 36.27 0.22 0.89 16 26 O -0.38 -4.29 10.46 -35.23 -0.37 -4.66 16 27 C 0.06 0.64 6.82 37.03 0.25 0.90 16 28 C -0.16 -1.99 4.12 -26.80 -0.11 -2.10 16 29 C -0.11 -1.32 3.63 -88.20 -0.32 -1.64 16 30 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.27 8.10 6.25 -40.82 -0.26 7.84 16 32 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.03 0.65 6.73 -51.93 -0.35 0.30 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.07 1.05 7.84 -51.93 -0.41 0.65 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.06 1.38 8.12 -51.93 -0.42 0.96 16 40 H 0.41 7.55 6.02 -40.82 -0.25 7.30 16 41 H 0.08 1.00 7.62 -51.93 -0.40 0.61 16 42 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 43 H 0.10 0.72 8.14 -51.92 -0.42 0.30 16 44 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 45 H 0.05 0.47 8.12 -51.93 -0.42 0.05 16 46 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.08 1.02 7.77 -51.93 -0.40 0.62 16 48 H 0.09 1.38 6.94 -51.93 -0.36 1.01 16 LS Contribution 367.72 15.07 5.54 5.54 Total: -1.00 -32.45 367.72 -9.57 -42.02 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -7.90 Total: 8.68 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -0.93 Total: 2.55 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: -0.03 Total: -53.11 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -1.15 Total: -24.50 kcal Atomic # 14 Polarization: 23.91 SS G_CDS: -5.10 Total: 18.82 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.45 -9.57 -42.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028047936.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.524 kcal (2) G-P(sol) polarization free energy of solvation -32.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds