Wall clock time and date at job start Tue Mar 31 2020 13:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86805 * 119.99738 * 2 1 4 4 H 1.48500 * 109.46691 * 179.72473 * 3 2 1 5 5 H 1.48503 * 109.47032 * 299.72117 * 3 2 1 6 6 H 1.48494 * 109.47062 * 59.72467 * 3 2 1 7 7 C 1.38810 * 119.99810 * 179.72475 * 2 1 3 8 8 H 1.07999 * 119.99779 * 155.10382 * 7 2 1 9 9 N 1.36929 * 120.00233 * 335.09825 * 7 2 1 10 10 C 1.47424 * 125.65182 * 331.84059 * 9 7 2 11 11 C 1.54907 * 104.83588 * 204.09122 * 10 9 7 12 12 C 1.55155 * 101.58106 * 322.98622 * 11 10 9 13 13 C 1.47026 * 125.65011 * 151.52776 * 9 7 2 14 14 H 1.09008 * 109.88082 * 59.56305 * 13 9 7 15 15 C 1.53001 * 109.88016 * 298.39992 * 13 9 7 16 16 N 1.46500 * 109.47302 * 61.51176 * 15 13 9 17 17 C 1.34773 * 120.00122 * 186.19375 * 16 15 13 18 18 O 1.21282 * 119.99987 * 359.97438 * 17 16 15 19 19 C 1.50698 * 120.00289 * 179.97438 * 17 16 15 20 20 H 1.08998 * 110.37422 * 305.91985 * 19 17 16 21 21 O 1.43932 * 110.42317 * 183.54617 * 19 17 16 22 22 C 1.43766 * 109.64100 * 215.17130 * 21 19 17 23 23 C 1.53679 * 106.82634 * 1.34163 * 22 21 19 24 24 H 1.09005 * 109.74052 * 267.27731 * 23 22 21 25 25 C 1.51240 * 112.33139 * 144.99799 * 23 22 21 26 26 O 1.42699 * 111.49579 * 295.00558 * 25 23 22 27 27 C 1.43201 * 112.75732 * 299.56261 * 26 25 23 28 28 C 1.52760 * 108.43296 * 64.90812 * 27 26 25 29 29 C 1.53101 * 110.45683 * 300.07423 * 28 27 26 30 30 H 1.08993 * 113.39848 * 283.65631 * 29 28 27 31 31 H 0.97003 * 120.00035 * 174.41820 * 1 2 3 32 32 H 1.09004 * 110.36730 * 322.92980 * 10 9 7 33 33 H 1.08999 * 110.37071 * 85.13755 * 10 9 7 34 34 H 1.08999 * 111.00619 * 81.06130 * 11 10 9 35 35 H 1.09004 * 111.00163 * 204.87710 * 11 10 9 36 36 H 1.09001 * 110.71912 * 153.86399 * 12 11 10 37 37 H 1.09001 * 110.72641 * 277.14216 * 12 11 10 38 38 H 1.09002 * 109.46872 * 181.50928 * 15 13 9 39 39 H 1.08997 * 109.47151 * 301.50638 * 15 13 9 40 40 H 0.96999 * 119.99738 * 6.19548 * 16 15 13 41 41 H 1.08994 * 109.99143 * 120.68235 * 22 21 19 42 42 H 1.09007 * 109.98932 * 242.00264 * 22 21 19 43 43 H 1.09009 * 109.07216 * 55.52514 * 25 23 22 44 44 H 1.09002 * 109.07350 * 174.48317 * 25 23 22 45 45 H 1.08995 * 109.64492 * 305.22764 * 27 26 25 46 46 H 1.08996 * 109.81899 * 184.69498 * 27 26 25 47 47 H 1.09005 * 109.30122 * 179.77545 * 28 27 26 48 48 H 1.08993 * 109.14547 * 60.28148 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0067 5 1 1.8965 2.3935 -1.2159 6 1 1.8863 2.3994 1.2091 7 6 2.0102 -1.2021 0.0058 8 1 3.0149 -1.2475 -0.3878 9 7 1.4210 -2.3305 0.5105 10 6 0.3854 -2.3634 1.5591 11 6 0.5064 -3.7720 2.1921 12 6 0.8343 -4.6439 0.9514 13 6 1.7119 -3.7095 0.0919 14 1 2.7651 -3.9339 0.2609 15 6 1.3703 -3.8867 -1.3890 16 7 2.1988 -2.9846 -2.1926 17 6 1.9850 -2.8753 -3.5188 18 8 1.1070 -3.5242 -4.0470 19 6 2.8369 -1.9469 -4.3454 20 1 2.8201 -0.9413 -3.9252 21 8 2.3806 -1.9284 -5.7104 22 6 3.5061 -1.7907 -6.5943 23 6 4.7632 -1.7522 -5.7111 24 1 5.0168 -0.7183 -5.4765 25 6 5.9461 -2.4306 -6.3653 26 8 5.7178 -3.8287 -6.5371 27 6 5.4970 -4.5103 -5.2973 28 6 4.2005 -3.9865 -4.6822 29 6 4.2991 -2.4799 -4.4286 30 1 4.8987 -2.2264 -3.5544 31 1 -0.4850 -0.8361 -0.0817 32 1 0.5778 -1.5937 2.3067 33 1 -0.6031 -2.2264 1.1206 34 1 1.3183 -3.8054 2.9187 35 1 -0.4355 -4.0779 2.6475 36 1 1.3878 -5.5366 1.2427 37 1 -0.0768 -4.9114 0.4162 38 1 1.5630 -4.9178 -1.6854 39 1 0.3178 -3.6532 -1.5495 40 1 2.9013 -2.4659 -1.7702 41 1 3.5534 -2.6424 -7.2728 42 1 3.4220 -0.8647 -7.1633 43 1 6.1230 -1.9760 -7.3402 44 1 6.8285 -2.2876 -5.7416 45 1 6.3284 -4.3167 -4.6195 46 1 5.4113 -5.5823 -5.4750 47 1 4.0165 -4.4996 -3.7383 48 1 3.3752 -4.1836 -5.3663 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028047936.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:11 Heat of formation + Delta-G solvation = -128.808481 kcal Electronic energy + Delta-G solvation = -29851.193031 eV Core-core repulsion = 25905.494315 eV Total energy + Delta-G solvation = -3945.698716 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.17603 -40.37945 -39.34487 -38.40742 -35.57682 -34.75803 -34.14133 -32.93186 -31.29372 -30.86522 -29.61346 -26.80614 -26.45975 -25.57907 -24.54482 -23.75831 -22.08447 -21.50589 -20.92309 -20.63489 -19.42448 -18.20045 -17.92389 -17.44195 -17.17167 -16.99981 -16.60580 -16.34722 -16.15753 -15.92391 -15.63434 -15.55095 -15.08418 -14.94702 -14.42493 -14.26249 -14.12239 -13.65910 -13.63822 -13.46135 -13.35266 -13.17389 -12.87877 -12.67390 -12.56615 -12.34418 -12.18182 -12.06757 -11.86817 -11.85379 -11.70506 -11.52819 -11.48903 -11.25576 -10.99348 -10.56641 -10.50743 -10.47211 -9.97091 -8.92562 -8.19443 -5.37579 1.53156 1.58206 1.65852 1.79048 2.04429 2.65552 2.86852 2.94502 3.12008 3.29015 3.48627 3.52983 3.60183 3.84686 3.91341 3.91672 3.99590 3.99944 4.16899 4.18451 4.25013 4.33199 4.36495 4.42304 4.46521 4.55768 4.60580 4.63545 4.68155 4.73061 4.75938 4.81164 4.82995 4.96357 4.96809 5.05762 5.09830 5.13489 5.21061 5.33623 5.45267 5.52670 5.76780 5.80271 6.17629 6.36478 6.62131 6.94471 7.26168 7.73979 8.39362 9.05888 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.013517 B = 0.004428 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.000841 B = 6321.885032 C = 7421.006701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.078 4.078 3 Si 1.108 2.892 4 H -0.255 1.255 5 H -0.300 1.300 6 H -0.297 1.297 7 C -0.318 4.318 8 H 0.069 0.931 9 N -0.609 5.609 10 C 0.139 3.861 11 C -0.119 4.119 12 C -0.115 4.115 13 C 0.141 3.859 14 H 0.060 0.940 15 C 0.125 3.875 16 N -0.690 5.690 17 C 0.510 3.490 18 O -0.589 6.589 19 C 0.062 3.938 20 H 0.097 0.903 21 O -0.389 6.389 22 C 0.049 3.951 23 C -0.146 4.146 24 H 0.119 0.881 25 C 0.070 3.930 26 O -0.394 6.394 27 C 0.067 3.933 28 C -0.151 4.151 29 C -0.096 4.096 30 H 0.134 0.866 31 H 0.252 0.748 32 H 0.019 0.981 33 H -0.007 1.007 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.019 0.981 40 H 0.410 0.590 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.115 0.885 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.101 0.899 47 H 0.071 0.929 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.974 -7.307 -5.952 18.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.275 4.275 3 Si 0.933 3.067 4 H -0.178 1.178 5 H -0.227 1.227 6 H -0.224 1.224 7 C -0.447 4.447 8 H 0.087 0.913 9 N -0.334 5.334 10 C 0.014 3.986 11 C -0.157 4.157 12 C -0.153 4.153 13 C 0.034 3.966 14 H 0.077 0.923 15 C -0.001 4.001 16 N -0.342 5.342 17 C 0.297 3.703 18 O -0.470 6.470 19 C 0.001 3.999 20 H 0.115 0.885 21 O -0.308 6.308 22 C -0.027 4.027 23 C -0.165 4.165 24 H 0.137 0.863 25 C -0.006 4.006 26 O -0.313 6.313 27 C -0.010 4.010 28 C -0.189 4.189 29 C -0.115 4.115 30 H 0.152 0.848 31 H 0.062 0.938 32 H 0.037 0.963 33 H 0.011 0.989 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.123 0.877 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.037 0.963 40 H 0.249 0.751 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.133 0.867 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.120 0.880 47 H 0.089 0.911 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 15.053 -6.160 -6.527 17.526 hybrid contribution -0.706 -0.852 0.298 1.146 sum 14.347 -7.013 -6.230 17.142 Atomic orbital electron populations 1.70827 1.08145 1.29371 1.50622 1.27084 0.96435 1.04862 0.99077 0.82984 0.75286 0.72382 0.76027 1.17831 1.22734 1.22438 1.19771 0.96537 0.87869 1.40553 0.91315 1.44901 1.46462 1.01453 1.40601 1.21483 0.91043 0.96146 0.89972 1.22683 1.02276 0.93619 0.97117 1.22530 0.99520 0.97791 0.95462 1.21558 0.98558 0.86236 0.90228 0.92258 1.21806 0.93185 0.92253 0.92866 1.45855 1.37075 1.44930 1.06342 1.20763 0.83971 0.82511 0.83067 1.90621 1.35323 1.48177 1.72925 1.23160 0.94287 0.98369 0.84050 0.88533 1.88662 1.32378 1.94987 1.14807 1.23343 0.84253 1.02370 0.92686 1.22790 0.96717 1.02688 0.94267 0.86281 1.22151 0.94858 0.80739 1.02860 1.88080 1.92037 1.20770 1.30404 1.22606 0.95040 0.97418 0.85918 1.22123 1.00078 0.94964 1.01739 1.22984 0.92359 0.95741 1.00378 0.84828 0.93821 0.96261 0.98885 0.90253 0.89794 0.87723 0.91865 0.91407 0.96272 0.75089 0.91286 0.89212 0.86708 0.90172 0.90357 0.88045 0.91063 0.93366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.68 13.08 21.65 0.28 -57.40 16 2 C -0.08 -4.19 5.18 84.86 0.44 -3.75 16 3 Si 1.11 48.25 29.99 68.60 2.06 50.30 16 4 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 5 H -0.30 -13.27 7.11 99.48 0.71 -12.56 16 6 H -0.30 -13.25 7.11 99.48 0.71 -12.54 16 7 C -0.32 -15.76 8.13 84.03 0.68 -15.07 16 8 H 0.07 3.16 6.67 -2.91 -0.02 3.14 16 9 N -0.61 -27.79 2.89 -668.22 -1.93 -29.72 16 10 C 0.14 6.23 5.65 86.85 0.49 6.72 16 11 C -0.12 -3.76 7.09 31.98 0.23 -3.53 16 12 C -0.11 -3.39 6.49 31.79 0.21 -3.18 16 13 C 0.14 5.09 3.34 45.35 0.15 5.25 16 14 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 15 C 0.12 4.85 5.19 86.38 0.45 5.30 16 16 N -0.69 -26.37 4.80 -463.07 -2.22 -28.60 16 17 C 0.51 20.88 5.50 87.66 0.48 21.36 16 18 O -0.59 -29.33 16.52 15.34 0.25 -29.07 16 19 C 0.06 2.07 3.52 30.84 0.11 2.18 16 20 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 21 O -0.39 -14.13 10.21 -130.60 -1.33 -15.46 16 22 C 0.05 1.22 6.78 72.21 0.49 1.71 16 23 C -0.15 -2.67 2.98 -10.60 -0.03 -2.70 16 24 H 0.12 1.67 8.14 -2.38 -0.02 1.65 16 25 C 0.07 1.02 6.12 71.41 0.44 1.45 16 26 O -0.39 -7.94 10.46 -148.98 -1.56 -9.50 16 27 C 0.07 1.22 6.82 71.90 0.49 1.71 16 28 C -0.15 -3.71 4.12 30.55 0.13 -3.58 16 29 C -0.10 -2.19 3.63 -9.23 -0.03 -2.22 16 30 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.25 15.94 6.25 -92.71 -0.58 15.36 16 32 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 33 H -0.01 -0.34 6.73 -2.39 -0.02 -0.36 16 34 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 36 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.06 1.92 7.84 -2.39 -0.02 1.90 16 38 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.02 0.90 8.12 -2.39 -0.02 0.88 16 40 H 0.41 14.78 6.02 -92.71 -0.56 14.22 16 41 H 0.07 1.79 7.62 -2.39 -0.02 1.77 16 42 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 43 H 0.11 1.25 8.14 -2.38 -0.02 1.24 16 44 H 0.08 0.82 8.13 -2.39 -0.02 0.81 16 45 H 0.08 1.07 8.12 -2.39 -0.02 1.05 16 46 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.07 1.80 7.77 -2.38 -0.02 1.78 16 48 H 0.05 1.56 6.94 -2.39 -0.02 1.55 16 Total: -1.00 -76.45 367.72 0.85 -75.60 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: 0.58 Total: 32.21 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: 4.71 Total: 11.64 kcal Atomic # 7 Polarization: -111.84 SS G_CDS: -3.87 Total: -115.71 kcal Atomic # 8 Polarization: -51.40 SS G_CDS: -2.64 Total: -54.04 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.06 Total: 50.30 kcal Total: -76.45 0.85 -75.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028047936.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.208 kcal (2) G-P(sol) polarization free energy of solvation -76.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds