Wall clock time and date at job start Tue Mar 31 2020 14:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30378 * 125.96560 * 2 1 4 4 N 1.39921 * 109.02117 * 180.02562 * 3 2 1 5 5 C 1.46497 * 125.74300 * 180.02562 * 4 3 2 6 6 C 1.34415 * 108.51443 * 359.76228 * 4 3 2 7 7 F 1.35101 * 126.34567 * 180.25279 * 6 4 3 8 8 C 1.38502 * 107.31050 * 0.37362 * 6 4 3 9 9 C 1.47172 * 126.45568 * 179.89330 * 8 6 4 10 10 O 1.21639 * 120.00098 * 269.68834 * 9 8 6 11 11 N 1.34772 * 119.99866 * 89.69087 * 9 8 6 12 12 C 1.46499 * 120.00034 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.35805 * 324.71975 * 12 11 9 14 14 C 1.54845 * 109.35943 * 204.99615 * 12 11 9 15 15 C 1.50121 * 110.81445 * 201.06155 * 14 12 11 16 16 C 1.52527 * 105.41433 * 97.68551 * 15 14 12 17 17 C 1.46238 * 114.27438 * 270.58765 * 16 15 14 18 18 N 1.50164 * 107.53002 * 58.41187 * 17 16 15 19 19 C 1.36940 * 120.53765 * 109.56644 * 18 17 16 20 20 H 1.08006 * 120.00126 * 172.84054 * 19 18 17 21 21 C 1.38811 * 119.99948 * 352.83126 * 19 18 17 22 22 N 1.31613 * 120.00167 * 319.29592 * 21 19 18 23 23 Si 1.86801 * 119.99631 * 139.29019 * 21 19 18 24 24 H 1.48498 * 109.47287 * 270.00129 * 23 21 19 25 25 H 1.48497 * 109.47263 * 30.00411 * 23 21 19 26 26 H 1.48506 * 109.46972 * 150.00177 * 23 21 19 27 27 C 1.43430 * 118.92544 * 289.83407 * 18 17 16 28 28 H 1.09005 * 109.47038 * 269.96973 * 1 2 3 29 29 H 1.08993 * 109.47727 * 29.97239 * 1 2 3 30 30 H 1.09006 * 109.47187 * 149.97825 * 1 2 3 31 31 H 1.09005 * 109.47367 * 89.96955 * 5 4 3 32 32 H 1.08994 * 109.47580 * 209.97588 * 5 4 3 33 33 H 1.09008 * 109.47238 * 329.97489 * 5 4 3 34 34 H 0.97001 * 120.00173 * 359.97438 * 11 9 8 35 35 H 1.08995 * 109.20678 * 80.72016 * 14 12 11 36 36 H 1.09000 * 109.17081 * 321.38192 * 14 12 11 37 37 H 1.08998 * 110.25305 * 338.70962 * 15 14 12 38 38 H 1.09002 * 110.37182 * 216.71684 * 15 14 12 39 39 H 1.09004 * 108.51900 * 149.35009 * 16 15 14 40 40 H 1.08994 * 108.39931 * 31.74574 * 16 15 14 41 41 H 1.08996 * 109.85131 * 298.89823 * 17 16 15 42 42 H 1.09006 * 109.84163 * 177.91356 * 17 16 15 43 43 H 0.96996 * 119.99932 * 353.65700 * 22 21 19 44 44 H 1.09001 * 108.15893 * 213.03183 * 27 18 17 45 45 H 1.09000 * 108.16547 * 329.60142 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2726 1.0552 0.0000 4 7 3.6111 0.6474 -0.0006 5 6 4.7762 1.5355 -0.0002 6 6 3.6479 -0.6962 0.0043 7 9 4.7576 -1.4667 0.0102 8 6 2.3374 -1.1444 -0.0006 9 6 1.8931 -2.5474 0.0000 10 8 1.7085 -3.1274 -1.0532 11 7 1.6905 -3.1897 1.1674 12 6 1.2487 -4.5864 1.1680 13 1 0.5729 -4.7520 0.3289 14 6 0.5062 -4.8894 2.4926 15 6 0.4883 -6.3648 2.7687 16 6 1.6381 -6.6093 3.7407 17 6 2.9196 -6.8946 3.0965 18 7 3.2529 -5.7254 2.2151 19 6 4.2758 -4.8761 2.5431 20 1 4.5839 -4.1083 1.8488 21 6 4.9166 -5.0019 3.7680 22 7 4.2170 -5.2546 4.8538 23 14 6.7719 -4.8126 3.8752 24 1 7.4165 -6.1364 3.6825 25 1 7.2359 -3.8776 2.8190 26 1 7.1381 -4.2732 5.2095 27 6 2.4787 -5.5092 1.0271 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8901 -0.5134 30 1 -0.3634 -0.8898 -0.5142 31 1 5.0652 1.7555 1.0275 32 1 5.6047 1.0481 -0.5142 33 1 4.5258 2.4638 -0.5138 34 1 1.8380 -2.7273 2.0073 35 1 -0.5188 -4.5256 2.4203 36 1 1.0115 -4.3773 3.3114 37 1 0.6487 -6.9233 1.8465 38 1 -0.4587 -6.6542 3.2243 39 1 1.3771 -7.4522 4.3807 40 1 1.7542 -5.7241 4.3659 41 1 2.8381 -7.8000 2.4951 42 1 3.6941 -7.0203 3.8530 43 1 3.2478 -5.2619 4.8155 44 1 3.1335 -5.0808 0.2682 45 1 2.1355 -6.4780 0.6642 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034510588.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:47 Heat of formation + Delta-G solvation = 32.884024 kcal Electronic energy + Delta-G solvation = -29293.037540 eV Core-core repulsion = 25263.182783 eV Total energy + Delta-G solvation = -4029.854757 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.16493 -41.35421 -39.25920 -37.78119 -34.38737 -34.23273 -33.24379 -31.22766 -30.59289 -29.94113 -29.26892 -26.41703 -25.79709 -24.23368 -23.04002 -22.13677 -20.74304 -20.43079 -19.72469 -19.23855 -17.83764 -17.08921 -16.83994 -16.59769 -15.98996 -15.66056 -15.07087 -14.67298 -14.65693 -14.26246 -13.98032 -13.70308 -13.64016 -13.55730 -13.43017 -13.12598 -12.73558 -12.66232 -12.51839 -12.35874 -12.20508 -12.11533 -11.79663 -11.04740 -10.93944 -10.84475 -10.55869 -10.36841 -10.15487 -10.05104 -9.80566 -9.73145 -9.54906 -9.43039 -9.38416 -8.69103 -8.66213 -8.12115 -6.93725 -6.14833 -2.99695 1.38351 1.88092 2.25601 2.90619 3.53375 3.57031 3.72418 3.72768 3.89163 4.32733 4.62499 4.71550 4.88855 4.99989 5.15470 5.16500 5.19361 5.21159 5.32368 5.35344 5.43750 5.48158 5.65083 5.70457 5.75124 5.96556 6.01216 6.04248 6.26628 6.29419 6.37048 6.40744 6.61977 6.65924 6.70783 6.71604 6.88312 6.93561 7.12102 7.25428 7.27426 7.31586 7.99452 8.07340 8.55592 8.67646 9.10385 9.88041 10.32348 11.15519 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.011562 B = 0.005368 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.135574 B = 5215.214178 C = 6904.581430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.129 3.871 3 N -0.277 5.277 4 N -0.377 5.377 5 C 0.094 3.906 6 C 0.299 3.701 7 F -0.081 7.081 8 C -0.286 4.286 9 C 0.596 3.404 10 O -0.545 6.545 11 N -0.691 5.691 12 C 0.114 3.886 13 H 0.077 0.923 14 C -0.111 4.111 15 C -0.110 4.110 16 C -0.135 4.135 17 C 0.129 3.871 18 N -0.586 5.586 19 C -0.348 4.348 20 H 0.064 0.936 21 C -0.017 4.017 22 N -0.904 5.904 23 Si 1.035 2.965 24 H -0.294 1.294 25 H -0.294 1.294 26 H -0.294 1.294 27 C 0.153 3.847 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.400 0.600 35 H 0.046 0.954 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.039 0.961 40 H 0.071 0.929 41 H 0.023 0.977 42 H 0.094 0.906 43 H 0.273 0.727 44 H 0.041 0.959 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.209 9.592 -6.303 13.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.037 4.037 3 N -0.100 5.100 4 N -0.163 5.163 5 C -0.047 4.047 6 C 0.153 3.847 7 F -0.060 7.060 8 C -0.302 4.302 9 C 0.379 3.621 10 O -0.423 6.423 11 N -0.339 5.339 12 C 0.006 3.994 13 H 0.095 0.905 14 C -0.149 4.149 15 C -0.148 4.148 16 C -0.174 4.174 17 C 0.005 3.995 18 N -0.308 5.308 19 C -0.475 4.475 20 H 0.082 0.918 21 C -0.219 4.219 22 N -0.546 5.546 23 Si 0.866 3.134 24 H -0.222 1.222 25 H -0.221 1.221 26 H -0.221 1.221 27 C 0.022 3.978 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.235 0.765 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.090 0.910 41 H 0.042 0.958 42 H 0.112 0.888 43 H 0.086 0.914 44 H 0.059 0.941 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.770 10.387 -6.022 12.919 hybrid contribution -0.617 -0.434 -0.556 0.937 sum -5.386 9.953 -6.578 13.090 Atomic orbital electron populations 1.20296 0.85380 1.04095 1.03740 1.22145 0.97065 0.88148 0.96366 1.77228 0.84233 1.21279 1.27269 1.48611 1.07146 1.02678 1.57828 1.22045 0.83770 0.94497 1.04376 1.17849 0.83714 0.81685 1.01490 1.91724 1.49411 1.71366 1.93526 1.19783 0.90300 0.95977 1.24132 1.16922 0.77304 0.83695 0.84143 1.90756 1.52253 1.67745 1.31516 1.45989 1.66650 1.13392 1.07854 1.22820 0.98219 0.81071 0.97307 0.90529 1.21661 0.98377 0.97219 0.97659 1.20939 0.98055 0.95798 1.00007 1.21098 0.96257 1.01704 0.98390 1.20592 0.95885 0.88344 0.94633 1.44378 1.34770 1.27196 1.24436 1.19935 1.09546 1.15511 1.02552 0.91783 1.25342 1.05216 1.00667 0.90652 1.70832 1.08885 1.47412 1.27448 0.83958 0.78183 0.76363 0.74901 1.22219 1.22065 1.22125 1.20626 0.91328 0.95554 0.90288 0.89637 0.90100 0.89776 0.89795 0.89032 0.88328 0.76531 0.93562 0.91015 0.91735 0.92641 0.94247 0.91047 0.95834 0.88772 0.91396 0.94054 0.94393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.28 36.00 0.37 -0.44 16 2 C 0.13 1.85 7.26 -82.01 -0.60 1.26 16 3 N -0.28 -3.96 12.49 33.91 0.42 -3.54 16 4 N -0.38 -5.20 3.98 -67.94 -0.27 -5.47 16 5 C 0.09 0.83 11.43 59.85 0.68 1.51 16 6 C 0.30 4.93 8.70 -16.32 -0.14 4.78 16 7 F -0.08 -1.44 17.31 2.25 0.04 -1.40 16 8 C -0.29 -4.82 5.89 -104.97 -0.62 -5.43 16 9 C 0.60 11.18 7.16 -12.64 -0.09 11.09 16 10 O -0.54 -11.77 16.77 5.24 0.09 -11.68 16 11 N -0.69 -12.47 5.07 -53.30 -0.27 -12.74 16 12 C 0.11 2.06 2.91 -66.22 -0.19 1.87 16 13 H 0.08 1.38 7.58 -51.93 -0.39 0.98 16 14 C -0.11 -1.84 5.23 -27.19 -0.14 -1.99 16 15 C -0.11 -1.79 5.76 -28.41 -0.16 -1.95 16 16 C -0.14 -2.60 4.96 -30.19 -0.15 -2.75 16 17 C 0.13 2.86 5.23 -5.21 -0.03 2.84 16 18 N -0.59 -13.81 2.62 -175.40 -0.46 -14.27 16 19 C -0.35 -9.21 9.46 -15.06 -0.14 -9.35 16 20 H 0.06 1.80 8.05 -52.48 -0.42 1.37 16 21 C -0.02 -0.45 4.53 -17.43 -0.08 -0.53 16 22 N -0.90 -25.22 11.99 55.49 0.67 -24.55 16 23 Si 1.04 24.87 30.06 -169.99 -5.11 19.76 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 C 0.15 3.23 4.74 -4.93 -0.02 3.20 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.92 8.01 -51.93 -0.42 0.50 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 34 H 0.40 7.14 8.42 -40.82 -0.34 6.79 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 1.35 6.58 -51.93 -0.34 1.01 16 37 H 0.06 1.05 6.28 -51.93 -0.33 0.73 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 1.54 4.64 -51.93 -0.24 1.30 16 41 H 0.02 0.49 8.13 -51.93 -0.42 0.07 16 42 H 0.09 2.38 5.61 -51.93 -0.29 2.09 16 43 H 0.27 7.39 4.95 -40.82 -0.20 7.19 16 44 H 0.04 0.98 7.80 -51.93 -0.41 0.58 16 45 H 0.04 0.76 6.89 -51.93 -0.36 0.40 16 LS Contribution 363.22 15.07 5.47 5.47 Total: -1.00 -31.84 363.22 -7.07 -38.91 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -6.34 Total: 5.38 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -1.31 Total: 4.11 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: 0.09 Total: -60.57 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -5.11 Total: 19.76 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.84 -7.07 -38.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034510588.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.799 kcal (2) G-P(sol) polarization free energy of solvation -31.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds