Wall clock time and date at job start Tue Mar 31 2020 14:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99872 * 2 1 4 4 H 1.48505 * 109.47207 * 239.99826 * 3 2 1 5 5 H 1.48496 * 109.47239 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46973 * 120.00538 * 3 2 1 7 7 C 1.38818 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99986 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99941 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00098 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47359 * 34.99567 * 10 9 7 12 12 C 1.52993 * 109.47238 * 154.99631 * 10 9 7 13 13 C 1.53007 * 109.47366 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46944 * 300.00407 * 13 12 10 15 15 H 1.09000 * 109.47365 * 299.99227 * 14 13 12 16 16 N 1.46508 * 109.46965 * 179.97438 * 14 13 12 17 17 C 1.34773 * 119.99535 * 154.99714 * 16 14 13 18 18 O 1.21596 * 120.00588 * 0.02562 * 17 16 14 19 19 C 1.47435 * 119.99430 * 180.02562 * 17 16 14 20 20 C 1.41293 * 126.41723 * 0.11487 * 19 17 16 21 21 N 1.30448 * 108.02045 * 180.26613 * 20 19 17 22 22 N 1.39935 * 108.90083 * 359.77413 * 21 20 19 23 23 C 1.46492 * 125.75643 * 179.97438 * 22 21 20 24 24 C 1.53000 * 109.47186 * 305.02952 * 23 22 21 25 25 F 1.39906 * 109.47288 * 179.97438 * 24 23 22 26 26 C 1.34264 * 108.48866 * 0.02562 * 22 21 20 27 27 C 1.53003 * 109.47458 * 59.99758 * 14 13 12 28 28 C 1.52998 * 109.46876 * 299.99906 * 27 14 13 29 29 H 0.96996 * 120.00369 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00078 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.47177 * 60.00238 * 12 10 9 32 32 H 1.08999 * 109.47710 * 300.00054 * 12 10 9 33 33 H 1.08990 * 109.47500 * 179.97438 * 13 12 10 34 34 H 1.09006 * 109.46359 * 59.99731 * 13 12 10 35 35 H 0.96994 * 119.99544 * 335.00445 * 16 14 13 36 36 H 1.07995 * 125.98632 * 0.06544 * 20 19 17 37 37 H 1.09010 * 109.47139 * 65.02451 * 23 22 21 38 38 H 1.08999 * 109.47612 * 185.02827 * 23 22 21 39 39 H 1.09002 * 109.47305 * 299.99885 * 24 23 22 40 40 H 1.08999 * 109.47217 * 59.99946 * 24 23 22 41 41 H 1.08002 * 126.28609 * 179.97438 * 26 22 21 42 42 H 1.09000 * 109.47266 * 59.99408 * 27 14 13 43 43 H 1.08995 * 109.47298 * 179.97438 * 27 14 13 44 44 H 1.09001 * 109.47283 * 299.99905 * 28 27 14 45 45 H 1.09002 * 109.47435 * 179.97438 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9689 -3.5506 0.5888 12 6 1.1810 -4.7521 0.6091 13 6 1.9458 -6.0773 0.6086 14 6 2.3091 -6.4558 -0.8286 15 1 1.3982 -6.5619 -1.4178 16 7 3.0419 -7.7245 -0.8291 17 6 3.0327 -8.5074 -1.9261 18 8 2.4167 -8.1608 -2.9154 19 6 3.7697 -9.7844 -1.9263 20 6 4.5242 -10.3176 -0.8573 21 7 5.0263 -11.4569 -1.2466 22 7 4.6189 -11.7060 -2.5620 23 6 4.9722 -12.8831 -3.3592 24 6 6.4945 -13.0297 -3.4051 25 9 6.8320 -14.1543 -4.1660 26 6 3.8504 -10.6836 -2.9706 27 6 3.1863 -5.3605 -1.4383 28 6 2.4215 -4.0354 -1.4378 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 0.2703 -4.8584 0.0197 32 1 0.9218 -4.4823 1.6329 33 1 1.3211 -6.8575 1.0433 34 1 2.8567 -5.9712 1.1977 35 1 3.5335 -8.0008 -0.0400 36 1 4.6636 -9.8604 0.1111 37 1 4.5350 -13.7732 -2.9065 38 1 4.5879 -12.7646 -4.3723 39 1 6.9318 -12.1398 -3.8578 40 1 6.8788 -13.1483 -2.3921 41 1 3.3843 -10.5818 -3.9395 42 1 4.0972 -5.2544 -0.8492 43 1 3.4455 -5.6303 -2.4621 44 1 1.5105 -4.1413 -2.0269 45 1 3.0465 -3.2549 -1.8717 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034679045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:34 Heat of formation + Delta-G solvation = -14.403532 kcal Electronic energy + Delta-G solvation = -26452.433081 eV Core-core repulsion = 22420.527782 eV Total energy + Delta-G solvation = -4031.905299 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.35854 -41.82736 -39.65201 -37.79533 -34.88249 -34.71790 -32.97496 -31.00277 -30.67932 -30.36176 -29.52557 -27.24697 -24.53595 -23.81564 -22.94707 -22.25337 -21.34781 -20.85267 -20.22454 -19.44415 -18.36551 -17.12640 -17.04510 -16.75165 -16.18253 -16.05356 -15.68203 -15.25480 -15.09744 -14.72927 -14.38170 -14.16227 -13.89474 -13.69904 -13.56226 -13.40129 -13.20857 -12.95384 -12.50240 -12.21869 -11.97848 -11.77221 -11.74194 -11.44662 -11.30395 -11.00274 -10.77932 -10.72155 -10.63357 -10.18612 -10.10971 -10.06397 -9.90481 -9.72160 -9.54998 -9.20099 -8.86828 -8.79587 -6.90661 -5.72373 -3.00630 1.11185 1.68862 1.79115 3.18697 3.33602 3.46379 3.50815 3.51763 3.54014 3.87751 4.19788 4.26569 4.32570 4.48323 4.62315 4.64279 4.77930 4.95600 4.96238 5.09430 5.11501 5.29079 5.36025 5.55633 5.66058 5.72669 5.77960 5.89395 5.92011 5.94101 6.08081 6.25821 6.28801 6.32090 6.35568 6.53526 6.61591 6.70863 6.77249 7.02239 7.03680 7.19605 7.54096 7.73523 8.25807 8.46601 9.57363 10.16523 10.50979 11.50340 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.034192 B = 0.001848 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.709932 B =15148.879735 C =15399.255151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.120 4.120 13 C -0.119 4.119 14 C 0.147 3.853 15 H 0.088 0.912 16 N -0.721 5.721 17 C 0.592 3.408 18 O -0.547 6.547 19 C -0.287 4.287 20 C 0.087 3.913 21 N -0.298 5.298 22 N -0.366 5.366 23 C 0.102 3.898 24 C 0.053 3.947 25 F -0.206 7.206 26 C 0.131 3.869 27 C -0.123 4.123 28 C -0.132 4.132 29 H 0.255 0.745 30 H 0.383 0.617 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.396 0.604 36 H 0.192 0.808 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.190 0.810 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.505 -28.487 -3.515 30.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.366 5.366 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.159 4.159 13 C -0.157 4.157 14 C 0.044 3.956 15 H 0.106 0.894 16 N -0.370 5.370 17 C 0.379 3.621 18 O -0.426 6.426 19 C -0.301 4.301 20 C -0.101 4.101 21 N -0.117 5.117 22 N -0.146 5.146 23 C -0.020 4.020 24 C -0.003 4.003 25 F -0.188 7.188 26 C -0.019 4.019 27 C -0.163 4.163 28 C -0.173 4.173 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.229 0.771 36 H 0.209 0.791 37 H 0.120 0.880 38 H 0.131 0.869 39 H 0.101 0.899 40 H 0.111 0.889 41 H 0.207 0.793 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.934 -29.228 -3.976 31.459 hybrid contribution -0.063 1.450 0.032 1.452 sum 10.871 -27.778 -3.944 30.089 Atomic orbital electron populations 1.69647 1.05075 1.25670 1.57830 1.24734 0.95500 0.97627 1.03210 0.86289 0.78518 0.83719 0.77792 1.21334 1.21751 1.21353 1.19201 0.90934 0.84194 1.42473 0.91293 1.42423 1.05781 0.99796 1.88573 1.20243 0.94278 0.85960 0.92811 0.93624 1.21751 0.98956 0.93483 1.01743 1.21750 1.00829 0.98249 0.94909 1.21102 0.95438 0.81623 0.97447 0.89395 1.45919 1.53407 1.21841 1.15854 1.17187 0.79640 0.82196 0.83051 1.90795 1.44378 1.74026 1.33354 1.20376 1.13056 1.00470 0.96242 1.24129 0.94446 0.92132 0.99415 1.77159 1.23581 1.18655 0.92340 1.48254 1.38327 1.17071 1.10944 1.22326 0.96855 0.86765 0.96043 1.22157 0.94249 0.86651 0.97234 1.92813 1.93179 1.54499 1.78267 1.23040 0.92462 0.86483 0.99934 1.21896 0.98557 0.95338 1.00468 1.22224 0.99775 0.94537 1.00777 0.93534 0.78316 0.91971 0.91393 0.91861 0.91573 0.77062 0.79085 0.88019 0.86946 0.89876 0.88942 0.79269 0.92347 0.92360 0.92497 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.32 13.06 55.49 0.72 -27.59 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.73 -18.09 5.12 -53.43 -0.27 -18.36 16 10 C 0.18 3.43 2.77 -67.93 -0.19 3.24 16 11 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 12 C -0.12 -1.90 5.39 -26.73 -0.14 -2.04 16 13 C -0.12 -1.43 5.39 -26.73 -0.14 -1.57 16 14 C 0.15 1.91 2.45 -67.93 -0.17 1.74 16 15 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 16 N -0.72 -7.58 5.07 -54.88 -0.28 -7.86 16 17 C 0.59 7.21 7.78 -12.52 -0.10 7.11 16 18 O -0.55 -8.82 16.56 5.28 0.09 -8.73 16 19 C -0.29 -2.70 6.13 -105.06 -0.64 -3.35 16 20 C 0.09 0.67 11.50 -16.98 -0.20 0.47 16 21 N -0.30 -2.51 12.33 30.86 0.38 -2.13 16 22 N -0.37 -2.53 3.65 -60.81 -0.22 -2.75 16 23 C 0.10 0.40 6.94 -4.05 -0.03 0.37 16 24 C 0.05 0.23 7.73 37.16 0.29 0.52 16 25 F -0.21 -1.31 17.36 2.25 0.04 -1.27 16 26 C 0.13 1.03 11.25 -16.56 -0.19 0.84 16 27 C -0.12 -1.81 5.49 -26.73 -0.15 -1.96 16 28 C -0.13 -2.40 5.50 -26.73 -0.15 -2.54 16 29 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.38 10.19 7.80 -40.82 -0.32 9.87 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.40 2.92 7.56 -40.82 -0.31 2.61 16 36 H 0.19 0.86 7.50 -52.49 -0.39 0.47 16 37 H 0.10 0.33 8.14 -51.92 -0.42 -0.09 16 38 H 0.11 0.20 8.06 -51.93 -0.42 -0.22 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.19 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 378.11 15.07 5.70 5.70 Total: -1.00 -34.80 378.11 -7.79 -42.59 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -6.87 Total: 7.34 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -2.05 Total: -4.40 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: 0.33 Total: -58.69 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.09 Total: -8.73 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.80 -7.79 -42.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034679045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.185 kcal (2) G-P(sol) polarization free energy of solvation -34.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds