Wall clock time and date at job start Tue Mar 31 2020 14:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99872 * 2 1 4 4 H 1.48505 * 109.47207 * 239.99826 * 3 2 1 5 5 H 1.48496 * 109.47239 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46973 * 120.00538 * 3 2 1 7 7 C 1.38818 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99986 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99941 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00098 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47359 * 34.99567 * 10 9 7 12 12 C 1.52993 * 109.47238 * 154.99631 * 10 9 7 13 13 C 1.53007 * 109.47366 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46944 * 300.00407 * 13 12 10 15 15 H 1.09000 * 109.47365 * 299.99227 * 14 13 12 16 16 N 1.46508 * 109.46965 * 179.97438 * 14 13 12 17 17 C 1.34773 * 119.99535 * 154.99714 * 16 14 13 18 18 O 1.21596 * 120.00588 * 0.02562 * 17 16 14 19 19 C 1.47435 * 119.99430 * 180.02562 * 17 16 14 20 20 C 1.41293 * 126.41723 * 0.11487 * 19 17 16 21 21 N 1.30448 * 108.02045 * 180.26613 * 20 19 17 22 22 N 1.39935 * 108.90083 * 359.77413 * 21 20 19 23 23 C 1.46492 * 125.75643 * 179.97438 * 22 21 20 24 24 C 1.53000 * 109.47186 * 305.02952 * 23 22 21 25 25 F 1.39906 * 109.47288 * 179.97438 * 24 23 22 26 26 C 1.34264 * 108.48866 * 0.02562 * 22 21 20 27 27 C 1.53003 * 109.47458 * 59.99758 * 14 13 12 28 28 C 1.52998 * 109.46876 * 299.99906 * 27 14 13 29 29 H 0.96996 * 120.00369 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00078 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.47177 * 60.00238 * 12 10 9 32 32 H 1.08999 * 109.47710 * 300.00054 * 12 10 9 33 33 H 1.08990 * 109.47500 * 179.97438 * 13 12 10 34 34 H 1.09006 * 109.46359 * 59.99731 * 13 12 10 35 35 H 0.96994 * 119.99544 * 335.00445 * 16 14 13 36 36 H 1.07995 * 125.98632 * 0.06544 * 20 19 17 37 37 H 1.09010 * 109.47139 * 65.02451 * 23 22 21 38 38 H 1.08999 * 109.47612 * 185.02827 * 23 22 21 39 39 H 1.09002 * 109.47305 * 299.99885 * 24 23 22 40 40 H 1.08999 * 109.47217 * 59.99946 * 24 23 22 41 41 H 1.08002 * 126.28609 * 179.97438 * 26 22 21 42 42 H 1.09000 * 109.47266 * 59.99408 * 27 14 13 43 43 H 1.08995 * 109.47298 * 179.97438 * 27 14 13 44 44 H 1.09001 * 109.47283 * 299.99905 * 28 27 14 45 45 H 1.09002 * 109.47435 * 179.97438 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9689 -3.5506 0.5888 12 6 1.1810 -4.7521 0.6091 13 6 1.9458 -6.0773 0.6086 14 6 2.3091 -6.4558 -0.8286 15 1 1.3982 -6.5619 -1.4178 16 7 3.0419 -7.7245 -0.8291 17 6 3.0327 -8.5074 -1.9261 18 8 2.4167 -8.1608 -2.9154 19 6 3.7697 -9.7844 -1.9263 20 6 4.5242 -10.3176 -0.8573 21 7 5.0263 -11.4569 -1.2466 22 7 4.6189 -11.7060 -2.5620 23 6 4.9722 -12.8831 -3.3592 24 6 6.4945 -13.0297 -3.4051 25 9 6.8320 -14.1543 -4.1660 26 6 3.8504 -10.6836 -2.9706 27 6 3.1863 -5.3605 -1.4383 28 6 2.4215 -4.0354 -1.4378 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 0.2703 -4.8584 0.0197 32 1 0.9218 -4.4823 1.6329 33 1 1.3211 -6.8575 1.0433 34 1 2.8567 -5.9712 1.1977 35 1 3.5335 -8.0008 -0.0400 36 1 4.6636 -9.8604 0.1111 37 1 4.5350 -13.7732 -2.9065 38 1 4.5879 -12.7646 -4.3723 39 1 6.9318 -12.1398 -3.8578 40 1 6.8788 -13.1483 -2.3921 41 1 3.3843 -10.5818 -3.9395 42 1 4.0972 -5.2544 -0.8492 43 1 3.4455 -5.6303 -2.4621 44 1 1.5105 -4.1413 -2.0269 45 1 3.0465 -3.2549 -1.8717 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034679045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:33 Heat of formation + Delta-G solvation = -38.206921 kcal Electronic energy + Delta-G solvation = -26453.465273 eV Core-core repulsion = 22420.527782 eV Total energy + Delta-G solvation = -4032.937491 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.78740 -42.42056 -40.68165 -39.06341 -36.30224 -35.29835 -34.51338 -32.47144 -31.64297 -31.47849 -30.28892 -28.65810 -25.70937 -24.82619 -24.00695 -23.48905 -22.25285 -21.72488 -21.17621 -20.69369 -19.24703 -18.84150 -17.52092 -17.44348 -17.10437 -16.82026 -16.65102 -16.20574 -15.99099 -15.80960 -15.43947 -15.28760 -15.07672 -14.95049 -14.80296 -14.49921 -13.95860 -13.92702 -13.71073 -13.37965 -13.12219 -13.03460 -12.77958 -12.64911 -12.42940 -12.27113 -12.20368 -12.14210 -11.98331 -11.81449 -11.61116 -11.40521 -11.15514 -10.88242 -10.77196 -10.64607 -10.06462 -9.65970 -8.96281 -7.90871 -5.18677 0.48652 1.15756 1.21748 1.48007 1.50973 1.56894 2.31656 2.50331 2.58918 3.15070 3.41792 3.57242 3.74452 3.74685 3.84228 3.89274 3.95872 3.98010 4.11693 4.17396 4.24712 4.35064 4.42724 4.46083 4.51563 4.57050 4.65221 4.69871 4.75557 4.76900 4.93148 5.05672 5.18085 5.20870 5.30544 5.33007 5.38916 5.51768 5.59586 5.62433 5.69285 5.75290 6.31819 6.45319 6.72804 7.37191 7.39064 8.15786 8.37847 9.32588 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.034192 B = 0.001848 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.709932 B =15148.879735 C =15399.255151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.971 3.029 4 H -0.281 1.281 5 H -0.297 1.297 6 H -0.276 1.276 7 C -0.236 4.236 8 H 0.075 0.925 9 N -0.739 5.739 10 C 0.172 3.828 11 H 0.048 0.952 12 C -0.114 4.114 13 C -0.105 4.105 14 C 0.156 3.844 15 H 0.064 0.936 16 N -0.706 5.706 17 C 0.592 3.408 18 O -0.595 6.595 19 C -0.310 4.310 20 C 0.094 3.906 21 N -0.318 5.318 22 N -0.361 5.361 23 C 0.098 3.902 24 C 0.056 3.944 25 F -0.217 7.217 26 C 0.136 3.864 27 C -0.111 4.111 28 C -0.123 4.123 29 H 0.249 0.751 30 H 0.371 0.629 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.415 0.585 36 H 0.221 0.779 37 H 0.110 0.890 38 H 0.136 0.864 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.205 0.795 42 H 0.076 0.924 43 H 0.047 0.953 44 H 0.038 0.962 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.242 -30.361 -2.658 32.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.800 3.200 4 H -0.207 1.207 5 H -0.223 1.223 6 H -0.202 1.202 7 C -0.368 4.368 8 H 0.093 0.907 9 N -0.378 5.378 10 C 0.064 3.936 11 H 0.066 0.934 12 C -0.152 4.152 13 C -0.143 4.143 14 C 0.051 3.949 15 H 0.082 0.918 16 N -0.356 5.356 17 C 0.381 3.619 18 O -0.476 6.476 19 C -0.325 4.325 20 C -0.093 4.093 21 N -0.138 5.138 22 N -0.140 5.140 23 C -0.023 4.023 24 C 0.001 3.999 25 F -0.198 7.198 26 C -0.016 4.016 27 C -0.151 4.151 28 C -0.164 4.164 29 H 0.058 0.942 30 H 0.202 0.798 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.252 0.748 36 H 0.237 0.763 37 H 0.128 0.872 38 H 0.154 0.846 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.222 0.778 42 H 0.094 0.906 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 12.745 -31.175 -3.084 33.821 hybrid contribution -0.562 1.923 -0.287 2.024 sum 12.183 -29.252 -3.371 31.867 Atomic orbital electron populations 1.69811 1.06571 1.25924 1.59891 1.25544 0.96361 1.01023 1.04193 0.85250 0.77194 0.79443 0.78130 1.20722 1.22345 1.20225 1.19598 0.91392 0.85352 1.40487 0.90703 1.42673 1.05436 1.01153 1.88586 1.20504 0.94562 0.84996 0.93563 0.93376 1.21641 0.98390 0.94252 1.00959 1.21650 1.01767 0.96485 0.94447 1.20807 0.94342 0.82145 0.97624 0.91790 1.45662 1.53001 1.20580 1.16402 1.17555 0.78993 0.82877 0.82455 1.90774 1.46540 1.75233 1.35101 1.20224 1.14497 0.99944 0.97839 1.24554 0.93175 0.91587 1.00022 1.77145 1.24293 1.19127 0.93189 1.48441 1.37529 1.17330 1.10662 1.22565 0.96576 0.86078 0.97045 1.22140 0.94655 0.86275 0.96858 1.92791 1.93312 1.55181 1.78554 1.23332 0.91831 0.86206 1.00216 1.21759 0.98973 0.93829 1.00498 1.22028 0.98968 0.95974 0.99407 0.94192 0.79754 0.92958 0.91477 0.89293 0.89256 0.74786 0.76312 0.87151 0.84564 0.89465 0.89327 0.77827 0.90556 0.93431 0.94331 0.94229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.23 13.06 21.65 0.28 -59.95 16 2 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 3 Si 0.97 46.65 29.55 68.60 2.03 48.68 16 4 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 5 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 7 C -0.24 -13.21 9.93 84.04 0.83 -12.37 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 9 N -0.74 -37.52 5.12 -322.95 -1.65 -39.17 16 10 C 0.17 6.61 2.77 44.99 0.12 6.74 16 11 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 12 C -0.11 -3.46 5.39 30.59 0.16 -3.30 16 13 C -0.11 -2.22 5.39 30.60 0.16 -2.06 16 14 C 0.16 3.78 2.45 44.99 0.11 3.89 16 15 H 0.06 1.92 7.58 -2.39 -0.02 1.90 16 16 N -0.71 -13.16 5.07 -445.79 -2.26 -15.42 16 17 C 0.59 13.61 7.78 86.67 0.67 14.28 16 18 O -0.59 -19.10 16.56 -4.02 -0.07 -19.16 16 19 C -0.31 -5.25 6.13 -20.15 -0.12 -5.38 16 20 C 0.09 1.20 11.50 85.65 0.99 2.19 16 21 N -0.32 -4.62 12.33 -56.28 -0.69 -5.31 16 22 N -0.36 -4.19 3.65 -346.30 -1.26 -5.45 16 23 C 0.10 0.55 6.94 86.38 0.60 1.15 16 24 C 0.06 0.40 7.73 71.98 0.56 0.96 16 25 F -0.22 -2.45 17.36 44.97 0.78 -1.67 16 26 C 0.14 1.88 11.25 84.27 0.95 2.83 16 27 C -0.11 -3.16 5.49 30.59 0.17 -2.99 16 28 C -0.12 -4.52 5.50 30.59 0.17 -4.35 16 29 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 30 H 0.37 20.34 7.80 -92.71 -0.72 19.62 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.41 4.58 7.56 -92.71 -0.70 3.88 16 36 H 0.22 1.17 7.50 -2.91 -0.02 1.15 16 37 H 0.11 0.47 8.14 -2.38 -0.02 0.45 16 38 H 0.14 0.11 8.06 -2.39 -0.02 0.09 16 39 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.21 2.07 8.06 -2.91 -0.02 2.04 16 42 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -77.03 378.11 2.58 -74.45 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: -0.41 Total: 25.58 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: 5.84 Total: -2.56 kcal Atomic # 7 Polarization: -119.72 SS G_CDS: -5.59 Total: -125.30 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.07 Total: -19.16 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.78 Total: -1.67 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -77.03 2.58 -74.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034679045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.238 kcal (2) G-P(sol) polarization free energy of solvation -77.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds