Wall clock time and date at job start Tue Mar 31 2020 13:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86808 * 119.99758 * 2 1 4 4 H 1.48504 * 109.47044 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47124 * 299.99999 * 3 2 1 6 6 H 1.48501 * 109.47097 * 60.00337 * 3 2 1 7 7 C 1.38804 * 120.00285 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00565 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00058 * 359.73152 * 7 2 1 10 10 C 1.47491 * 125.66151 * 359.96068 * 9 7 2 11 11 C 1.55236 * 104.79194 * 155.93293 * 10 9 7 12 12 C 1.54512 * 101.44040 * 36.66369 * 11 10 9 13 13 C 1.47177 * 125.66699 * 180.27289 * 9 7 2 14 14 C 1.52278 * 110.20442 * 83.42469 * 12 11 10 15 15 C 1.53307 * 109.42169 * 182.19498 * 14 12 11 16 16 N 1.46926 * 108.71265 * 306.49352 * 15 14 12 17 17 C 1.34772 * 120.56812 * 234.21151 * 16 15 14 18 18 O 1.21286 * 119.99241 * 355.41071 * 17 16 15 19 19 C 1.50693 * 120.00560 * 175.40894 * 17 16 15 20 20 H 1.09004 * 109.52658 * 312.95276 * 19 17 16 21 21 C 1.53148 * 109.52325 * 73.07452 * 19 17 16 22 22 O 1.43074 * 109.15058 * 175.21351 * 21 19 17 23 23 C 1.43071 * 113.59759 * 302.05287 * 22 21 19 24 24 C 1.53148 * 109.15277 * 57.94835 * 23 22 21 25 25 O 1.43071 * 109.52929 * 192.75192 * 19 17 16 26 26 C 1.46936 * 118.86867 * 54.22960 * 16 15 14 27 27 C 1.52278 * 110.20675 * 206.60994 * 12 11 10 28 28 H 0.96999 * 120.00239 * 359.97438 * 1 2 3 29 29 H 1.08996 * 110.35262 * 274.88180 * 10 9 7 30 30 H 1.09000 * 110.34844 * 37.16717 * 10 9 7 31 31 H 1.09008 * 111.19965 * 278.57119 * 11 10 9 32 32 H 1.08998 * 110.94505 * 154.65381 * 11 10 9 33 33 H 1.09001 * 109.90427 * 300.83544 * 13 9 7 34 34 H 1.09000 * 109.90624 * 61.90985 * 13 9 7 35 35 H 1.09000 * 109.47318 * 302.18499 * 14 12 11 36 36 H 1.09001 * 109.47893 * 62.20973 * 14 12 11 37 37 H 1.08999 * 109.60094 * 186.72402 * 15 14 12 38 38 H 1.09005 * 109.59678 * 66.25697 * 15 14 12 39 39 H 1.08995 * 109.52743 * 295.12089 * 21 19 17 40 40 H 1.09002 * 109.52080 * 55.25368 * 21 19 17 41 41 H 1.08993 * 109.52824 * 177.85486 * 23 22 21 42 42 H 1.09001 * 109.52364 * 297.98634 * 23 22 21 43 43 H 1.09002 * 109.52270 * 64.58720 * 24 23 22 44 44 H 1.08991 * 109.52830 * 184.72282 * 24 23 22 45 45 H 1.09007 * 109.59790 * 185.99579 * 26 16 15 46 46 H 1.08999 * 109.60245 * 65.52571 * 26 16 15 47 47 H 1.08997 * 109.48243 * 297.77366 * 27 12 11 48 48 H 1.08997 * 109.48116 * 57.81106 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2021 0.0001 9 7 1.3257 -2.3879 0.0066 10 6 -0.1420 -2.5335 0.0138 11 6 -0.4039 -3.9379 -0.5936 12 6 0.7807 -4.7463 -0.0188 13 6 1.9322 -3.7289 0.0136 14 6 0.4535 -5.2313 1.3871 15 6 1.6601 -5.9833 1.9606 16 7 2.0535 -7.0354 1.0135 17 6 2.1589 -8.3169 1.4175 18 8 2.0098 -8.5978 2.5879 19 6 2.4619 -9.4005 0.4152 20 1 1.8169 -9.2821 -0.4555 21 6 3.9279 -9.3027 -0.0170 22 8 4.2367 -10.4002 -0.8813 23 6 4.0074 -11.6806 -0.2854 24 6 2.5415 -11.7784 0.1468 25 8 2.2326 -10.6809 1.0111 26 6 2.3305 -6.6667 -0.3816 27 6 1.1193 -5.9106 -0.9400 28 1 -0.4850 0.8400 0.0004 29 1 -0.5231 -2.4819 1.0337 30 1 -0.6024 -1.7620 -0.6034 31 1 -0.3660 -3.9096 -1.6827 32 1 -1.3562 -4.3404 -0.2482 33 1 2.5639 -3.8551 -0.8657 34 1 2.5248 -3.8635 0.9185 35 1 0.2228 -4.3760 2.0221 36 1 -0.4070 -5.8993 1.3500 37 1 1.3900 -6.4336 2.9158 38 1 2.4894 -5.2901 2.1021 39 1 4.0894 -8.3644 -0.5476 40 1 4.5702 -9.3388 0.8630 41 1 4.2266 -12.4644 -1.0103 42 1 4.6533 -11.7983 0.5848 43 1 1.8991 -11.7411 -0.7330 44 1 2.3796 -12.7172 0.6764 45 1 2.5025 -7.5676 -0.9707 46 1 3.2118 -6.0266 -0.4226 47 1 0.2659 -6.5858 -1.0012 48 1 1.3546 -5.5309 -1.9343 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035160224.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:02 Heat of formation + Delta-G solvation = -85.713820 kcal Electronic energy + Delta-G solvation = -29283.143167 eV Core-core repulsion = 25339.313176 eV Total energy + Delta-G solvation = -3943.829991 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.03568 -39.81236 -38.44078 -36.41620 -35.76939 -33.34283 -32.36637 -31.01897 -30.62830 -29.05972 -28.32088 -26.21305 -25.48922 -24.61569 -23.35077 -22.64416 -21.80386 -20.24240 -19.97945 -18.17800 -17.53167 -17.10810 -17.03142 -16.72133 -16.35833 -15.84589 -15.57971 -15.14437 -14.87249 -14.76258 -14.41951 -13.89562 -13.82556 -13.59894 -13.54566 -13.11774 -13.05080 -12.63102 -12.34769 -12.27313 -12.06331 -11.93181 -11.57328 -11.24593 -11.17443 -11.04851 -10.98456 -10.93231 -10.86299 -10.69502 -10.17291 -10.03092 -9.93284 -9.75426 -9.68679 -9.55386 -9.44739 -8.65677 -8.60440 -6.82837 -5.65975 -3.07506 2.35202 2.55463 3.26372 3.38553 3.44247 3.46564 3.51889 4.10102 4.23175 4.47706 4.48147 4.55860 4.66953 4.72434 4.78295 4.90671 4.99838 5.04517 5.16220 5.17165 5.30201 5.32377 5.36225 5.42158 5.48520 5.54864 5.67257 5.79885 5.85113 5.90304 6.01998 6.10862 6.21709 6.29876 6.34391 6.46357 6.48353 6.56843 6.62709 6.70635 6.76441 6.93052 7.28177 7.51740 7.62377 7.85709 8.02729 8.36031 9.21569 9.82787 10.48041 11.37646 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.027182 B = 0.002797 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.838733 B =10009.613043 C =10266.895773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.220 4.220 8 H 0.077 0.923 9 N -0.603 5.603 10 C 0.153 3.847 11 C -0.136 4.136 12 C -0.071 4.071 13 C 0.146 3.854 14 C -0.113 4.113 15 C 0.113 3.887 16 N -0.601 5.601 17 C 0.523 3.477 18 O -0.522 6.522 19 C 0.039 3.961 20 H 0.094 0.906 21 C 0.033 3.967 22 O -0.372 6.372 23 C 0.020 3.980 24 C 0.023 3.977 25 O -0.351 6.351 26 C 0.097 3.903 27 C -0.116 4.116 28 H 0.251 0.749 29 H 0.011 0.989 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.021 0.979 34 H 0.022 0.978 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.116 0.884 40 H 0.069 0.931 41 H 0.108 0.892 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.110 0.890 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.064 0.936 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.411 -21.770 -3.006 22.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.743 3.257 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.349 4.349 8 H 0.094 0.906 9 N -0.329 5.329 10 C 0.029 3.971 11 C -0.174 4.174 12 C -0.072 4.072 13 C 0.020 3.980 14 C -0.151 4.151 15 C -0.009 4.009 16 N -0.336 5.336 17 C 0.309 3.691 18 O -0.397 6.397 19 C -0.023 4.023 20 H 0.111 0.889 21 C -0.044 4.044 22 O -0.291 6.291 23 C -0.057 4.057 24 C -0.054 4.054 25 O -0.269 6.269 26 C -0.026 4.026 27 C -0.154 4.154 28 H 0.062 0.938 29 H 0.029 0.971 30 H 0.122 0.878 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.039 0.961 34 H 0.040 0.960 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.134 0.866 40 H 0.088 0.912 41 H 0.126 0.874 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.128 0.872 45 H 0.099 0.901 46 H 0.098 0.902 47 H 0.083 0.917 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.310 -21.693 -2.357 22.242 hybrid contribution 0.390 0.834 -0.053 0.922 sum 4.699 -20.859 -2.410 21.517 Atomic orbital electron populations 1.69812 1.04870 1.24597 1.57790 1.24775 0.95704 0.97680 1.02563 0.86026 0.78659 0.83745 0.77239 1.20562 1.21781 1.21800 1.19106 0.90471 0.82521 1.42790 0.90559 1.44562 1.01946 0.99693 1.86737 1.21975 0.84666 0.92444 0.98060 1.23051 0.95627 0.98896 0.99847 1.20992 0.97858 0.94153 0.94187 1.21340 0.93272 0.85747 0.97624 1.21740 0.96786 0.99878 0.96675 1.21787 0.97989 0.88550 0.92546 1.48063 1.67759 1.06492 1.11302 1.19818 0.77745 0.82778 0.88774 1.90715 1.49252 1.81755 1.17957 1.22586 0.98252 0.85444 0.96018 0.88852 1.23286 0.93471 0.91547 0.96120 1.88132 1.87061 1.13899 1.39958 1.23323 0.96262 0.86351 0.99749 1.23345 0.95712 0.90801 0.95543 1.88227 1.87109 1.12264 1.39323 1.22072 0.99438 1.00064 0.81004 1.21816 0.97132 0.97127 0.99367 0.93827 0.97091 0.87815 0.92120 0.92498 0.96076 0.96038 0.89775 0.92085 0.89201 0.90540 0.86618 0.91234 0.87394 0.91775 0.91804 0.87165 0.90055 0.90188 0.91730 0.90233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.53 10.09 55.49 0.56 -25.97 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 3 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 7 C -0.22 -6.01 10.28 -15.06 -0.15 -6.16 16 8 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 9 N -0.60 -14.85 3.40 -170.08 -0.58 -15.42 16 10 C 0.15 3.59 5.58 -2.31 -0.01 3.58 16 11 C -0.14 -2.43 6.00 -24.75 -0.15 -2.57 16 12 C -0.07 -1.12 0.53 -154.09 -0.08 -1.20 16 13 C 0.15 2.81 5.42 -3.31 -0.02 2.80 16 14 C -0.11 -1.69 4.78 -26.94 -0.13 -1.82 16 15 C 0.11 1.59 6.13 -3.65 -0.02 1.57 16 16 N -0.60 -7.67 2.96 -172.61 -0.51 -8.18 16 17 C 0.52 7.27 7.04 -10.99 -0.08 7.20 16 18 O -0.52 -9.31 15.98 -13.98 -0.22 -9.53 16 19 C 0.04 0.43 2.40 -27.81 -0.07 0.36 16 20 H 0.09 0.89 7.21 -51.93 -0.37 0.52 16 21 C 0.03 0.32 5.97 37.23 0.22 0.54 16 22 O -0.37 -3.56 10.85 -48.80 -0.53 -4.09 16 23 C 0.02 0.14 7.05 37.23 0.26 0.41 16 24 C 0.02 0.18 7.05 37.23 0.26 0.44 16 25 O -0.35 -4.30 10.06 -62.37 -0.63 -4.93 16 26 C 0.10 1.03 5.11 -3.64 -0.02 1.01 16 27 C -0.12 -1.42 4.71 -26.94 -0.13 -1.54 16 28 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.01 0.28 7.74 -51.93 -0.40 -0.12 16 30 H 0.10 2.78 5.87 -51.93 -0.30 2.47 16 31 H 0.06 1.07 8.01 -51.92 -0.42 0.65 16 32 H 0.06 0.93 8.01 -51.93 -0.42 0.51 16 33 H 0.02 0.40 7.59 -51.93 -0.39 0.01 16 34 H 0.02 0.42 6.08 -51.93 -0.32 0.11 16 35 H 0.08 1.42 7.47 -51.93 -0.39 1.03 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.09 1.33 7.02 -51.93 -0.36 0.97 16 38 H 0.08 1.11 6.53 -51.93 -0.34 0.77 16 39 H 0.12 0.92 6.00 -51.93 -0.31 0.61 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.08 0.67 4.58 -51.92 -0.24 0.43 16 46 H 0.08 0.85 7.47 -51.93 -0.39 0.46 16 47 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 LS Contribution 358.56 15.07 5.40 5.40 Total: -1.00 -33.14 358.56 -9.31 -42.45 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -7.58 Total: -0.71 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -0.20 Total: 4.17 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: -0.53 Total: -49.57 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -1.38 Total: -18.56 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.14 -9.31 -42.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035160224.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.263 kcal (2) G-P(sol) polarization free energy of solvation -33.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds