Wall clock time and date at job start Tue Mar 31 2020 14:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99844 * 2 1 4 4 H 1.48493 * 109.47028 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46976 * 299.99891 * 3 2 1 6 6 H 1.48503 * 109.47166 * 59.99464 * 3 2 1 7 7 C 1.38808 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99995 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00164 * 0.02562 * 7 2 1 10 10 C 1.47661 * 134.46135 * 180.02562 * 9 7 2 11 11 C 1.53510 * 85.98506 * 204.29570 * 10 9 7 12 12 C 1.47670 * 134.45913 * 359.96403 * 9 7 2 13 13 C 1.52664 * 113.56728 * 90.99557 * 11 10 9 14 14 C 1.53326 * 109.16764 * 188.84282 * 13 11 10 15 15 N 1.46887 * 108.76473 * 307.59625 * 14 13 11 16 16 C 1.34776 * 120.49672 * 235.58611 * 15 14 13 17 17 O 1.21272 * 120.00397 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.99608 * 180.02562 * 16 15 14 19 19 O 1.42897 * 109.46796 * 180.02562 * 18 16 15 20 20 C 1.42903 * 113.99937 * 180.02562 * 19 18 16 21 21 H 1.09000 * 110.45338 * 330.69629 * 20 19 18 22 22 C 1.54510 * 110.51242 * 208.09713 * 20 19 18 23 23 C 1.54479 * 104.06272 * 241.35597 * 22 20 19 24 24 O 1.44423 * 104.80189 * 23.97369 * 23 22 20 25 25 C 1.44780 * 105.29981 * 319.45273 * 24 23 22 26 26 C 1.46886 * 119.00489 * 55.61163 * 15 14 13 27 27 C 1.52669 * 113.56192 * 222.23170 * 11 10 9 28 28 H 0.96995 * 120.00207 * 0.02562 * 1 2 3 29 29 H 1.08997 * 113.79659 * 90.02411 * 10 9 7 30 30 H 1.09004 * 113.89258 * 318.57379 * 10 9 7 31 31 H 1.08999 * 113.78862 * 41.42982 * 12 9 7 32 32 H 1.09006 * 113.79106 * 269.96754 * 12 9 7 33 33 H 1.08995 * 109.52515 * 68.93432 * 13 11 10 34 34 H 1.09006 * 109.52181 * 308.74660 * 13 11 10 35 35 H 1.08997 * 109.59372 * 67.38604 * 14 13 11 36 36 H 1.09006 * 109.58836 * 187.81635 * 14 13 11 37 37 H 1.09000 * 109.47211 * 300.00456 * 18 16 15 38 38 H 1.08994 * 109.46891 * 60.00413 * 18 16 15 39 39 H 1.09009 * 110.51015 * 359.97438 * 22 20 19 40 40 H 1.09000 * 110.51298 * 122.70878 * 22 20 19 41 41 H 1.08999 * 110.37492 * 142.81104 * 23 22 20 42 42 H 1.08998 * 110.36629 * 265.03327 * 23 22 20 43 43 H 1.08990 * 110.42778 * 281.78063 * 25 24 23 44 44 H 1.09003 * 110.48698 * 159.31934 * 25 24 23 45 45 H 1.09002 * 109.58780 * 184.60470 * 26 15 14 46 46 H 1.09004 * 109.59001 * 64.17917 * 26 15 14 47 47 H 1.09000 * 109.52013 * 291.06890 * 27 11 10 48 48 H 1.08993 * 109.52284 * 51.25105 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.7212 -3.8107 0.0015 11 6 0.3482 -4.0813 -0.6295 12 6 -0.1043 -2.7568 0.0007 13 6 0.3628 -4.0591 -2.1559 14 6 -1.0790 -4.1179 -2.6741 15 7 -1.7588 -5.2612 -2.0509 16 6 -2.3414 -6.2086 -2.8122 17 8 -2.3064 -6.1213 -4.0212 18 6 -3.0363 -7.3765 -2.1608 19 8 -3.5692 -8.2367 -3.1698 20 6 -4.2528 -9.3815 -2.6560 21 1 -3.8332 -9.6757 -1.6939 22 6 -4.1775 -10.5532 -3.6604 23 6 -5.6534 -10.8364 -4.0181 24 8 -6.3423 -9.5954 -3.7515 25 6 -5.7648 -9.0943 -2.5221 26 6 -1.7947 -5.3561 -0.5856 27 6 -0.3580 -5.3058 -0.0526 28 1 -0.4850 0.8400 -0.0004 29 1 1.8378 -4.2341 0.9991 30 1 2.5599 -4.0362 -0.6572 31 1 -0.7169 -2.1424 -0.6591 32 1 -0.5298 -2.8672 0.9982 33 1 0.9188 -4.9198 -2.5275 34 1 0.8371 -3.1408 -2.5023 35 1 -1.5993 -3.1965 -2.4127 36 1 -1.0733 -4.2422 -3.7571 37 1 -2.3222 -7.9305 -1.5516 38 1 -3.8462 -7.0112 -1.5295 39 1 -3.6192 -10.2590 -4.5492 40 1 -3.7230 -11.4273 -3.1942 41 1 -5.7443 -11.1023 -5.0712 42 1 -6.0494 -11.6347 -3.3904 43 1 -6.1773 -9.6249 -1.6640 44 1 -5.9404 -8.0227 -2.4271 45 1 -2.2608 -6.2966 -0.2916 46 1 -2.3647 -4.5206 -0.1790 47 1 0.1739 -6.2084 -0.3534 48 1 -0.3751 -5.2375 1.0351 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035707897.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:09 Heat of formation + Delta-G solvation = -61.283701 kcal Electronic energy + Delta-G solvation = -28260.742336 eV Core-core repulsion = 24317.971714 eV Total energy + Delta-G solvation = -3942.770622 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.44224 -39.84803 -38.71064 -37.05474 -35.68466 -32.54964 -31.89596 -31.15592 -30.55513 -29.18468 -27.85775 -26.59091 -25.04435 -23.64612 -23.34770 -22.87218 -21.55486 -21.26165 -19.60760 -17.89093 -17.55595 -16.91338 -16.73599 -16.40215 -16.37087 -15.80097 -15.61758 -15.05368 -14.82186 -14.57994 -14.42470 -13.93255 -13.83732 -13.68003 -13.28326 -13.01420 -12.73245 -12.50741 -12.33813 -12.21481 -12.16716 -11.97124 -11.80036 -11.66039 -11.18110 -11.17123 -11.04664 -10.91078 -10.76783 -10.42726 -10.36637 -10.17846 -9.81319 -9.76127 -9.63878 -9.45252 -9.39420 -8.80760 -8.41079 -6.86950 -5.77502 -3.08952 2.63868 2.66299 3.38040 3.43773 3.46054 3.55450 3.60965 4.13214 4.42776 4.45030 4.47627 4.59041 4.70744 4.76665 4.91188 4.91664 4.99432 5.03093 5.05364 5.21085 5.26933 5.27523 5.34990 5.39538 5.44308 5.48268 5.56440 5.65474 5.71871 5.89202 5.91256 6.03892 6.15470 6.26242 6.31530 6.35419 6.41178 6.51111 6.60611 6.78615 6.82405 6.90838 7.21273 7.35617 7.49228 7.57242 7.98504 8.24139 9.05018 9.70848 10.60704 11.39604 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.034211 B = 0.002293 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.255159 B =12209.716266 C =12360.504982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.220 4.220 8 H 0.078 0.922 9 N -0.610 5.610 10 C 0.126 3.874 11 C -0.111 4.111 12 C 0.174 3.826 13 C -0.095 4.095 14 C 0.115 3.885 15 N -0.603 5.603 16 C 0.514 3.486 17 O -0.526 6.526 18 C 0.042 3.958 19 O -0.346 6.346 20 C 0.053 3.947 21 H 0.080 0.920 22 C -0.154 4.154 23 C 0.045 3.955 24 O -0.369 6.369 25 C 0.023 3.977 26 C 0.108 3.892 27 C -0.118 4.118 28 H 0.252 0.748 29 H 0.032 0.968 30 H 0.041 0.959 31 H 0.072 0.928 32 H 0.023 0.977 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.098 0.902 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.060 0.940 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.355 -21.955 -1.067 23.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.348 4.348 8 H 0.096 0.904 9 N -0.336 5.336 10 C 0.000 4.000 11 C -0.112 4.112 12 C 0.049 3.951 13 C -0.133 4.133 14 C -0.006 4.006 15 N -0.338 5.338 16 C 0.300 3.700 17 O -0.402 6.402 18 C -0.038 4.038 19 O -0.264 6.264 20 C -0.006 4.006 21 H 0.098 0.902 22 C -0.192 4.192 23 C -0.032 4.032 24 O -0.287 6.287 25 C -0.054 4.054 26 C -0.015 4.015 27 C -0.157 4.157 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.041 0.959 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.116 0.884 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.079 0.921 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.441 -21.406 -2.061 23.486 hybrid contribution 0.692 0.838 0.886 1.402 sum -8.749 -20.568 -1.175 22.382 Atomic orbital electron populations 1.69815 1.04948 1.25144 1.56964 1.24753 0.95660 0.97420 1.02644 0.86083 0.78755 0.83899 0.77253 1.20535 1.21709 1.21838 1.19056 0.90253 0.82065 1.43404 0.90373 1.45971 1.02399 0.99189 1.86009 1.22570 0.94410 0.86579 0.96488 1.22409 0.97958 0.95602 0.95218 1.22252 0.88088 0.88379 0.96382 1.21469 0.95181 1.02588 0.94064 1.21698 0.92968 0.87393 0.98567 1.48067 1.54886 1.23993 1.06863 1.20077 0.79361 0.83109 0.87420 1.90713 1.59059 1.76533 1.13900 1.22368 0.98252 0.91844 0.91305 1.88142 1.72652 1.34866 1.30757 1.23595 0.92611 0.86761 0.97601 0.90235 1.23081 0.98378 0.96857 1.00868 1.23420 0.90266 0.87417 1.02093 1.89240 1.60770 1.37287 1.41414 1.24051 0.92164 1.01295 0.87912 1.21806 0.98405 1.02072 0.79242 1.21816 0.94568 0.98793 1.00500 0.93758 0.95072 0.94064 0.90931 0.95916 0.92663 0.89391 0.90584 0.89373 0.90175 0.90302 0.88809 0.89470 0.88730 0.92139 0.91290 0.88359 0.90714 0.90422 0.92142 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.73 11.39 55.49 0.63 -26.10 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.22 -6.06 10.70 -15.06 -0.16 -6.22 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.61 -15.05 3.53 -179.73 -0.63 -15.68 16 10 C 0.13 2.45 8.07 -3.15 -0.03 2.43 16 11 C -0.11 -1.89 0.77 -154.42 -0.12 -2.01 16 12 C 0.17 3.81 6.32 -3.15 -0.02 3.79 16 13 C -0.09 -1.59 5.21 -26.73 -0.14 -1.73 16 14 C 0.12 1.84 6.30 -3.66 -0.02 1.81 16 15 N -0.60 -8.38 2.94 -172.67 -0.51 -8.89 16 16 C 0.51 7.52 7.77 -10.98 -0.09 7.44 16 17 O -0.53 -10.01 15.89 -14.35 -0.23 -10.24 16 18 C 0.04 0.44 4.61 36.01 0.17 0.60 16 19 O -0.35 -4.26 9.51 -55.14 -0.52 -4.78 16 20 C 0.05 0.44 3.59 -25.16 -0.09 0.35 16 21 H 0.08 0.45 7.84 -51.93 -0.41 0.04 16 22 C -0.15 -1.14 6.90 -25.16 -0.17 -1.31 16 23 C 0.04 0.33 7.63 37.93 0.29 0.62 16 24 O -0.37 -4.03 11.66 -35.23 -0.41 -4.44 16 25 C 0.02 0.19 7.40 37.94 0.28 0.47 16 26 C 0.11 1.22 6.23 -3.66 -0.02 1.20 16 27 C -0.12 -1.51 5.25 -26.73 -0.14 -1.65 16 28 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.03 0.59 8.09 -51.93 -0.42 0.17 16 30 H 0.04 0.79 8.09 -51.93 -0.42 0.37 16 31 H 0.07 1.78 6.47 -51.93 -0.34 1.44 16 32 H 0.02 0.51 8.07 -51.93 -0.42 0.09 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.09 1.72 8.01 -51.93 -0.42 1.30 16 35 H 0.08 1.28 7.52 -51.93 -0.39 0.89 16 36 H 0.09 1.47 6.98 -51.93 -0.36 1.11 16 37 H 0.08 0.63 7.69 -51.93 -0.40 0.23 16 38 H 0.08 0.63 7.90 -51.93 -0.41 0.22 16 39 H 0.09 0.84 8.00 -51.92 -0.42 0.43 16 40 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.10 0.87 8.09 -51.93 -0.42 0.45 16 45 H 0.07 0.59 5.89 -51.93 -0.31 0.28 16 46 H 0.08 0.92 8.09 -51.93 -0.42 0.50 16 47 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.08 0.92 8.11 -51.93 -0.42 0.50 16 LS Contribution 377.87 15.07 5.69 5.69 Total: -1.00 -34.80 377.87 -9.41 -44.21 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -8.05 Total: -2.20 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -0.36 Total: 5.47 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: -0.51 Total: -50.67 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -1.16 Total: -19.46 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.80 -9.41 -44.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035707897.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.077 kcal (2) G-P(sol) polarization free energy of solvation -34.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds