Wall clock time and date at job start Tue Mar 31 2020 14:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48501 * 109.47290 * 274.99077 * 3 2 1 5 5 H 1.48503 * 109.47352 * 34.99031 * 3 2 1 6 6 H 1.48498 * 109.47058 * 154.98738 * 3 2 1 7 7 C 1.38813 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99393 * 185.05299 * 7 2 1 9 9 N 1.36935 * 120.00048 * 5.05301 * 7 2 1 10 10 C 1.47165 * 135.99827 * 353.20841 * 9 7 2 11 11 C 1.52644 * 87.96986 * 206.72264 * 10 9 7 12 12 C 1.47158 * 135.99663 * 173.58681 * 9 7 2 13 13 C 1.52551 * 113.89344 * 88.17960 * 11 10 9 14 14 C 1.53363 * 109.13232 * 190.30879 * 13 11 10 15 15 N 1.46883 * 108.74400 * 307.75560 * 14 13 11 16 16 C 1.34781 * 120.46132 * 235.64599 * 15 14 13 17 17 O 1.21278 * 119.99853 * 179.97438 * 16 15 14 18 18 C 1.50697 * 119.99929 * 359.97438 * 16 15 14 19 19 O 1.42896 * 109.47094 * 180.02562 * 18 16 15 20 20 C 1.42900 * 114.00078 * 180.02562 * 19 18 16 21 21 H 1.09006 * 110.75411 * 29.29747 * 20 19 18 22 22 C 1.55306 * 110.85142 * 152.77003 * 20 19 18 23 23 C 1.55205 * 100.83027 * 152.17780 * 22 20 19 24 24 O 1.43647 * 105.25611 * 323.81692 * 23 22 20 25 25 C 1.43234 * 109.97464 * 24.28705 * 24 23 22 26 26 C 1.46896 * 119.07742 * 55.62790 * 15 14 13 27 27 C 1.52555 * 114.26275 * 220.76866 * 11 10 9 28 28 H 0.96996 * 119.99695 * 359.97438 * 1 2 3 29 29 H 1.08999 * 113.49290 * 321.42027 * 10 9 7 30 30 H 1.09003 * 113.48117 * 91.92842 * 10 9 7 31 31 H 1.09001 * 113.48544 * 268.07671 * 12 9 7 32 32 H 1.08992 * 113.49367 * 38.52819 * 12 9 7 33 33 H 1.09002 * 109.52540 * 310.19890 * 13 11 10 34 34 H 1.09000 * 109.53337 * 70.40665 * 13 11 10 35 35 H 1.09000 * 109.58889 * 187.98058 * 14 13 11 36 36 H 1.08993 * 109.59172 * 67.53144 * 14 13 11 37 37 H 1.09001 * 109.47383 * 299.99913 * 18 16 15 38 38 H 1.09003 * 109.47354 * 59.99774 * 18 16 15 39 39 H 1.09004 * 111.12358 * 270.24606 * 22 20 19 40 40 H 1.09004 * 111.12331 * 34.40334 * 22 20 19 41 41 H 1.08997 * 110.36922 * 204.80436 * 23 22 20 42 42 H 1.09000 * 110.21180 * 82.75377 * 23 22 20 43 43 H 1.09004 * 109.82840 * 238.76994 * 25 24 23 44 44 H 1.08998 * 109.83436 * 117.80109 * 25 24 23 45 45 H 1.09005 * 109.59196 * 184.59099 * 26 15 14 46 46 H 1.09000 * 109.71495 * 64.21390 * 26 15 14 47 47 H 1.09000 * 109.52568 * 289.75490 * 27 11 10 48 48 H 1.08993 * 109.52951 * 49.96578 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3922 2.1074 -1.3948 5 1 1.5043 2.6200 0.8029 6 1 3.5964 1.4121 0.5920 7 6 2.0103 -1.2021 -0.0005 8 1 3.0872 -1.2039 0.0818 9 7 1.3296 -2.3857 -0.1055 10 6 -0.0832 -2.7975 -0.1107 11 6 0.3664 -4.1538 0.4261 12 6 1.6903 -3.8045 -0.2559 13 6 0.4489 -4.2195 1.9480 14 6 1.1482 -5.5214 2.3578 15 7 0.4771 -6.6468 1.6941 16 6 -0.0136 -7.6726 2.4176 17 8 -0.5666 -8.5974 1.8610 18 6 0.1250 -7.6705 3.9182 19 8 -0.4685 -8.8552 4.4531 20 6 -0.3915 -8.9522 5.8767 21 1 -0.3822 -7.9616 6.3314 22 6 -1.5614 -9.8065 6.4367 23 6 -0.9179 -10.3685 7.7324 24 8 0.4592 -10.6048 7.3987 25 6 0.8488 -9.7652 6.3057 26 6 0.3478 -6.6385 0.2309 27 6 -0.3575 -5.3448 -0.1941 28 1 -0.4849 0.8400 0.0004 29 1 -0.7016 -2.2376 0.5909 30 1 -0.5173 -2.8478 -1.1093 31 1 1.7435 -4.1314 -1.2943 32 1 2.5676 -4.0934 0.3226 33 1 1.0186 -3.3675 2.3191 34 1 -0.5564 -4.1978 2.3687 35 1 1.0861 -5.6449 3.4390 36 1 2.1936 -5.4869 2.0511 37 1 1.1813 -7.6412 4.1856 38 1 -0.3779 -6.7947 4.3283 39 1 -2.4284 -9.1855 6.6622 40 1 -1.8246 -10.6107 5.7495 41 1 -1.4021 -11.3008 8.0229 42 1 -0.9920 -9.6374 8.5375 43 1 1.1950 -10.3784 5.4736 44 1 1.6425 -9.0890 6.6233 45 1 -0.2414 -7.4980 -0.0888 46 1 1.3365 -6.6828 -0.2259 47 1 -1.3912 -5.3630 0.1512 48 1 -0.3367 -5.2584 -1.2804 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035707898.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:12 Heat of formation + Delta-G solvation = -81.412305 kcal Electronic energy + Delta-G solvation = -28129.953277 eV Core-core repulsion = 24186.309813 eV Total energy + Delta-G solvation = -3943.643464 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.68252 -40.71531 -40.09924 -38.05927 -37.05311 -34.46913 -32.88399 -32.27499 -31.84864 -30.02536 -29.15684 -28.13867 -26.55587 -24.97358 -24.34083 -23.49166 -22.89463 -22.52977 -20.85409 -19.06174 -18.66168 -18.53868 -17.95201 -17.33518 -17.17337 -16.88270 -16.77282 -16.16871 -16.09923 -15.79878 -15.62567 -15.29127 -15.08858 -14.87023 -14.34337 -14.26891 -14.12392 -13.77380 -13.63781 -13.44851 -13.26302 -13.06377 -12.92485 -12.84802 -12.68300 -12.60206 -12.44191 -12.15747 -12.10585 -11.73966 -11.71138 -11.62983 -11.14567 -10.86341 -10.85376 -10.75164 -10.73063 -10.51704 -9.61976 -8.87405 -7.90497 -5.21864 1.45777 1.47716 1.53992 1.56188 1.68336 2.48167 2.62444 3.00550 3.31473 3.40025 3.46850 3.51569 3.62618 3.85710 3.87323 3.97436 4.09725 4.15225 4.17730 4.19822 4.25889 4.32477 4.35725 4.39036 4.59575 4.65274 4.70104 4.73803 4.76448 4.81782 4.84646 4.87749 4.92420 4.92795 5.03717 5.08799 5.16175 5.22739 5.29641 5.36305 5.49692 5.58318 5.75480 5.94780 5.95094 6.02997 6.39540 6.92610 7.12853 7.62378 8.65142 9.27985 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.021501 B = 0.002385 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.928840 B =11737.363558 C =12449.237366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.068 4.068 3 Si 0.974 3.026 4 H -0.292 1.292 5 H -0.296 1.296 6 H -0.264 1.264 7 C -0.222 4.222 8 H 0.086 0.914 9 N -0.638 5.638 10 C 0.164 3.836 11 C -0.087 4.087 12 C 0.129 3.871 13 C -0.093 4.093 14 C 0.114 3.886 15 N -0.602 5.602 16 C 0.512 3.488 17 O -0.575 6.575 18 C 0.042 3.958 19 O -0.375 6.375 20 C 0.051 3.949 21 H 0.109 0.891 22 C -0.154 4.154 23 C 0.049 3.951 24 O -0.405 6.405 25 C 0.027 3.973 26 C 0.121 3.879 27 C -0.105 4.105 28 H 0.247 0.753 29 H 0.030 0.970 30 H 0.007 0.993 31 H 0.038 0.962 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.115 0.885 36 H 0.085 0.915 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.061 0.939 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.289 -17.802 14.044 22.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.261 4.261 3 Si 0.803 3.197 4 H -0.220 1.220 5 H -0.223 1.223 6 H -0.188 1.188 7 C -0.350 4.350 8 H 0.104 0.896 9 N -0.363 5.363 10 C 0.038 3.962 11 C -0.088 4.088 12 C 0.004 3.996 13 C -0.131 4.131 14 C -0.007 4.007 15 N -0.335 5.335 16 C 0.300 3.700 17 O -0.455 6.455 18 C -0.037 4.037 19 O -0.294 6.294 20 C -0.007 4.007 21 H 0.127 0.873 22 C -0.191 4.191 23 C -0.027 4.027 24 O -0.325 6.325 25 C -0.050 4.050 26 C -0.002 4.002 27 C -0.144 4.144 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.025 0.975 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.133 0.867 36 H 0.103 0.897 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.093 0.907 41 H 0.117 0.883 42 H 0.101 0.899 43 H 0.084 0.916 44 H 0.109 0.891 45 H 0.100 0.900 46 H 0.101 0.899 47 H 0.080 0.920 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.132 -18.223 13.770 22.841 hybrid contribution 0.043 1.742 -0.747 1.895 sum 0.174 -16.482 13.024 21.007 Atomic orbital electron populations 1.70038 1.06529 1.25468 1.58178 1.25631 0.96469 1.00792 1.03251 0.85116 0.78091 0.79456 0.77061 1.21971 1.22274 1.18803 1.19315 0.91104 0.82903 1.41706 0.89601 1.45906 1.03802 1.01980 1.84650 1.21894 0.87606 0.90758 0.95908 1.21827 0.96904 0.93861 0.96235 1.22553 0.96139 0.83598 0.97288 1.21384 1.01138 0.97613 0.92985 1.21954 0.96675 0.83432 0.98676 1.48119 1.57198 1.20729 1.07499 1.20768 0.77567 0.81500 0.90118 1.90688 1.44427 1.36832 1.73531 1.22524 1.01350 0.89822 0.90038 1.88049 1.79516 1.41151 1.20640 1.23949 0.95120 1.00857 0.80795 0.87292 1.23397 0.98348 1.00370 0.97004 1.23571 0.80557 1.02300 0.96234 1.88402 1.28534 1.63606 1.51919 1.23706 0.97626 0.93912 0.89770 1.21551 1.01590 0.97800 0.79226 1.21650 0.99017 0.92949 1.00819 0.94440 0.95124 0.97510 0.94463 0.92667 0.91474 0.91760 0.86687 0.89669 0.87105 0.87273 0.87360 0.90747 0.88317 0.89924 0.91633 0.89148 0.89971 0.89924 0.92039 0.90304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.07 11.64 21.65 0.25 -56.82 16 2 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 3 Si 0.97 44.83 29.56 68.60 2.03 46.86 16 4 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 5 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.22 -12.03 10.74 84.03 0.90 -11.13 16 8 H 0.09 4.42 7.83 -2.91 -0.02 4.40 16 9 N -0.64 -31.24 3.55 -738.71 -2.62 -33.86 16 10 C 0.16 7.52 6.44 83.22 0.54 8.06 16 11 C -0.09 -2.85 0.83 -52.61 -0.04 -2.90 16 12 C 0.13 4.73 7.63 83.33 0.64 5.37 16 13 C -0.09 -2.59 5.25 30.57 0.16 -2.43 16 14 C 0.11 2.19 6.24 86.43 0.54 2.73 16 15 N -0.60 -13.62 2.94 -818.44 -2.41 -16.03 16 16 C 0.51 12.75 7.77 87.66 0.68 13.43 16 17 O -0.58 -19.74 15.89 16.02 0.25 -19.49 16 18 C 0.04 0.69 4.61 71.23 0.33 1.02 16 19 O -0.37 -7.90 9.61 -129.94 -1.25 -9.15 16 20 C 0.05 0.72 3.46 31.86 0.11 0.83 16 21 H 0.11 0.96 7.86 -2.38 -0.02 0.94 16 22 C -0.15 -2.01 6.91 32.14 0.22 -1.79 16 23 C 0.05 0.59 7.78 72.74 0.57 1.15 16 24 O -0.40 -7.44 11.36 -148.98 -1.69 -9.14 16 25 C 0.03 0.41 7.58 72.45 0.55 0.96 16 26 C 0.12 2.92 6.35 86.42 0.55 3.47 16 27 C -0.11 -2.89 5.31 30.57 0.16 -2.73 16 28 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 29 H 0.03 1.59 7.31 -2.39 -0.02 1.57 16 30 H 0.01 0.34 8.09 -2.39 -0.02 0.32 16 31 H 0.04 1.35 8.06 -2.39 -0.02 1.33 16 32 H 0.06 1.83 7.53 -2.39 -0.02 1.81 16 33 H 0.07 2.22 7.95 -2.39 -0.02 2.21 16 34 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.12 1.38 5.88 -2.39 -0.01 1.37 16 36 H 0.09 1.54 7.60 -2.39 -0.02 1.52 16 37 H 0.11 1.17 7.90 -2.39 -0.02 1.15 16 38 H 0.11 1.27 7.69 -2.39 -0.02 1.25 16 39 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.07 1.21 8.05 -2.39 -0.02 1.19 16 44 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.08 2.16 6.98 -2.38 -0.02 2.15 16 46 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 47 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.08 2.12 8.09 -2.39 -0.02 2.10 16 Total: -1.00 -76.09 378.54 1.87 -74.23 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 0.94 Total: 10.70 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 6.37 Total: 12.69 kcal Atomic # 7 Polarization: -101.93 SS G_CDS: -4.78 Total: -106.71 kcal Atomic # 8 Polarization: -35.08 SS G_CDS: -2.69 Total: -37.77 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -76.09 1.87 -74.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035707898.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.187 kcal (2) G-P(sol) polarization free energy of solvation -76.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds