Wall clock time and date at job start Tue Mar 31 2020 14:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30378 * 125.96443 * 2 1 4 4 N 1.39909 * 109.01948 * 179.97438 * 3 2 1 5 5 C 1.46509 * 125.73975 * 180.02562 * 4 3 2 6 6 C 1.34421 * 108.51712 * 359.72137 * 4 3 2 7 7 F 1.35092 * 126.34322 * 180.29092 * 6 4 3 8 8 C 1.38495 * 107.30585 * 0.43231 * 6 4 3 9 9 C 1.47175 * 126.45658 * 179.83377 * 8 6 4 10 10 O 1.21632 * 119.99916 * 269.69066 * 9 8 6 11 11 N 1.34766 * 119.99975 * 89.68847 * 9 8 6 12 12 C 1.46929 * 120.63348 * 0.02562 * 11 9 8 13 13 C 1.53196 * 108.77486 * 233.63046 * 12 11 9 14 14 C 1.53035 * 109.30995 * 305.36045 * 13 12 11 15 15 H 1.09004 * 109.45792 * 181.38956 * 14 13 12 16 16 N 1.46498 * 109.46284 * 301.34321 * 14 13 12 17 17 C 1.36938 * 120.00234 * 275.00456 * 16 14 13 18 18 H 1.08001 * 119.99703 * 359.97438 * 17 16 14 19 19 C 1.38810 * 119.99951 * 179.97438 * 17 16 14 20 20 N 1.31623 * 119.99908 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00020 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46863 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47029 * 119.99682 * 21 19 17 24 24 H 1.48492 * 109.47229 * 239.99978 * 21 19 17 25 25 C 1.53042 * 109.54021 * 61.36728 * 14 13 12 26 26 H 1.09006 * 109.49541 * 58.58370 * 25 14 13 27 27 C 1.52994 * 109.49646 * 178.67720 * 25 14 13 28 28 C 1.46924 * 120.63242 * 180.02562 * 11 9 8 29 29 H 1.08995 * 109.47407 * 270.03005 * 1 2 3 30 30 H 1.09006 * 109.46792 * 30.03225 * 1 2 3 31 31 H 1.09001 * 109.46797 * 150.02213 * 1 2 3 32 32 H 1.09001 * 109.46884 * 89.97547 * 5 4 3 33 33 H 1.09005 * 109.46808 * 209.96703 * 5 4 3 34 34 H 1.08992 * 109.47302 * 329.96745 * 5 4 3 35 35 H 1.08998 * 109.59209 * 113.83860 * 12 11 9 36 36 H 1.09003 * 109.58217 * 353.41142 * 12 11 9 37 37 H 1.09001 * 109.49651 * 65.31212 * 13 12 11 38 38 H 1.09001 * 109.49244 * 185.40784 * 13 12 11 39 39 H 0.97003 * 119.99548 * 95.00108 * 16 14 13 40 40 H 0.97003 * 119.99867 * 179.97438 * 20 19 17 41 41 H 1.09003 * 109.47178 * 60.00867 * 27 25 14 42 42 H 1.09004 * 109.46673 * 179.97438 * 27 25 14 43 43 H 1.08992 * 109.48072 * 299.99991 * 27 25 14 44 44 H 1.08999 * 109.58511 * 6.58326 * 28 11 9 45 45 H 1.08999 * 109.58969 * 246.15926 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0553 0.0000 4 7 3.6111 0.6475 0.0006 5 6 4.7763 1.5356 0.0013 6 6 3.6480 -0.6962 0.0072 7 9 4.7577 -1.4666 0.0153 8 6 2.3375 -1.1443 0.0008 9 6 1.8931 -2.5474 0.0011 10 8 1.7099 -3.1275 -1.0522 11 7 1.6892 -3.1894 1.1683 12 6 1.9058 -2.5019 2.4486 13 6 2.8656 -3.3380 3.3010 14 6 2.3151 -4.7594 3.4362 15 1 2.9838 -5.3497 4.0628 16 7 0.9862 -4.7118 4.0509 17 6 0.8632 -4.6752 5.4142 18 1 1.7460 -4.6818 6.0363 19 6 -0.3960 -4.6295 5.9966 20 7 -1.4718 -4.6209 5.2383 21 14 -0.5637 -4.5803 7.8564 22 1 0.7858 -4.5985 8.4757 23 1 -1.2747 -3.3395 8.2565 24 1 -1.3355 -5.7630 8.3153 25 6 2.2136 -5.4029 2.0513 26 1 3.1980 -5.4162 1.5833 27 6 1.6943 -6.8353 2.1906 28 6 1.2460 -4.5901 1.1848 29 1 -0.3634 0.0005 1.0276 30 1 -0.3633 0.8898 -0.5144 31 1 -0.3633 -0.8902 -0.5135 32 1 5.0644 1.7560 1.0292 33 1 5.6052 1.0478 -0.5117 34 1 4.5262 2.4635 -0.5130 35 1 0.9549 -2.3923 2.9701 36 1 2.3404 -1.5190 2.2666 37 1 3.8438 -3.3707 2.8212 38 1 2.9596 -2.8886 4.2896 39 1 0.1933 -4.7062 3.4920 40 1 -2.3518 -4.5894 5.6452 41 1 0.7093 -6.8209 2.6573 42 1 1.6217 -7.2929 1.2040 43 1 2.3812 -7.4123 2.8095 44 1 1.2453 -4.9851 0.1689 45 1 0.2414 -4.6507 1.6033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036282263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:16 Heat of formation + Delta-G solvation = 14.604428 kcal Electronic energy + Delta-G solvation = -29047.364397 eV Core-core repulsion = 25016.716977 eV Total energy + Delta-G solvation = -4030.647420 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.42829 -41.54114 -39.66588 -37.54905 -34.42185 -34.12453 -32.80532 -31.38734 -30.54495 -29.64103 -29.14020 -26.81226 -25.82434 -24.80700 -23.48124 -22.22876 -21.62578 -20.81205 -19.68170 -18.40043 -17.61422 -17.36582 -17.08768 -16.52098 -16.16915 -15.79919 -14.87379 -14.85652 -14.49547 -14.32592 -14.04965 -13.92548 -13.73966 -13.55360 -13.42377 -13.25145 -12.85862 -12.74495 -12.51527 -12.50256 -12.26111 -12.16687 -11.55628 -11.36090 -11.16013 -11.01101 -10.92269 -10.77740 -10.47143 -10.43269 -10.15894 -9.82612 -9.73961 -9.54265 -9.48934 -8.95056 -8.75364 -8.19849 -6.97115 -5.79160 -3.07265 1.23060 1.74773 2.16582 2.69938 3.36949 3.40996 3.47431 3.49188 3.68795 4.15598 4.57374 4.59020 4.75169 4.84478 4.92898 5.02570 5.13035 5.25031 5.35711 5.39824 5.56107 5.56734 5.61618 5.64945 5.72908 5.76947 5.84606 5.95845 6.09136 6.12157 6.22824 6.27477 6.34761 6.43480 6.51388 6.52793 6.66130 6.70999 6.78578 6.95318 7.02930 7.21930 7.69268 7.72438 8.39459 8.39941 9.51315 10.08028 10.43479 11.43286 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.014485 B = 0.003945 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.618018 B = 7096.343953 C = 7634.017606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.134 3.866 3 N -0.272 5.272 4 N -0.377 5.377 5 C 0.094 3.906 6 C 0.288 3.712 7 F -0.089 7.089 8 C -0.275 4.275 9 C 0.595 3.405 10 O -0.544 6.544 11 N -0.588 5.588 12 C 0.119 3.881 13 C -0.149 4.149 14 C 0.179 3.821 15 H 0.051 0.949 16 N -0.718 5.718 17 C -0.236 4.236 18 H 0.069 0.931 19 C -0.011 4.011 20 N -0.931 5.931 21 Si 0.903 3.097 22 H -0.282 1.282 23 H -0.293 1.293 24 H -0.293 1.293 25 C -0.109 4.109 26 H 0.065 0.935 27 C -0.137 4.137 28 C 0.119 3.881 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.384 0.616 40 H 0.254 0.746 41 H 0.071 0.929 42 H 0.044 0.956 43 H 0.053 0.947 44 H 0.085 0.915 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.600 9.672 -10.735 17.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.032 4.032 3 N -0.095 5.095 4 N -0.162 5.162 5 C -0.046 4.046 6 C 0.141 3.859 7 F -0.068 7.068 8 C -0.291 4.291 9 C 0.380 3.620 10 O -0.421 6.421 11 N -0.319 5.319 12 C -0.003 4.003 13 C -0.191 4.191 14 C 0.069 3.931 15 H 0.069 0.931 16 N -0.361 5.361 17 C -0.367 4.367 18 H 0.087 0.913 19 C -0.207 4.207 20 N -0.580 5.580 21 Si 0.734 3.266 22 H -0.207 1.207 23 H -0.220 1.220 24 H -0.220 1.220 25 C -0.129 4.129 26 H 0.084 0.916 27 C -0.194 4.194 28 C -0.003 4.003 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.219 0.781 40 H 0.064 0.936 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.104 0.896 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.732 10.671 -11.089 18.762 hybrid contribution 0.206 -0.776 1.074 1.341 sum 10.938 9.895 -10.015 17.829 Atomic orbital electron populations 1.20359 0.85048 1.04195 1.04290 1.22220 0.97280 0.87930 0.95791 1.77298 0.84059 1.21143 1.27029 1.48631 1.07277 1.02523 1.57758 1.22039 0.83682 0.94607 1.04313 1.17745 0.83350 0.81804 1.02953 1.91651 1.49691 1.71619 1.93844 1.19683 0.90299 0.95891 1.23271 1.17047 0.77300 0.83978 0.83636 1.90760 1.52696 1.67512 1.31172 1.48066 1.65091 1.12976 1.05795 1.21655 1.01403 0.94394 0.82844 1.22527 0.97012 1.00065 0.99460 1.20208 0.89363 0.92233 0.91323 0.93130 1.42477 1.01266 1.88292 1.04016 1.19260 0.92125 1.42356 0.83004 0.91260 1.24684 0.95484 1.03104 0.97425 1.69657 0.97042 1.57781 1.33496 0.86187 0.77355 0.77141 0.85902 1.20697 1.22008 1.21983 1.21713 0.98583 0.95656 0.96910 0.91622 1.21660 1.02847 0.94542 1.00401 1.21704 0.98301 0.79326 1.00973 0.89132 0.89984 0.89651 0.89822 0.89153 0.88220 0.89551 0.91794 0.93465 0.90840 0.78064 0.93599 0.91000 0.93734 0.92830 0.89647 0.90357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.28 36.01 0.37 -0.54 16 2 C 0.13 1.85 7.26 -82.01 -0.60 1.25 16 3 N -0.27 -3.62 12.49 33.91 0.42 -3.20 16 4 N -0.38 -4.45 3.98 -67.94 -0.27 -4.72 16 5 C 0.09 0.63 11.43 59.85 0.68 1.32 16 6 C 0.29 3.96 8.58 -16.32 -0.14 3.82 16 7 F -0.09 -1.18 17.31 2.25 0.04 -1.14 16 8 C -0.28 -4.20 3.88 -104.97 -0.41 -4.61 16 9 C 0.59 10.30 7.24 -12.64 -0.09 10.21 16 10 O -0.54 -10.86 16.52 5.25 0.09 -10.77 16 11 N -0.59 -9.90 2.97 -174.11 -0.52 -10.41 16 12 C 0.12 1.99 6.08 -3.71 -0.02 1.97 16 13 C -0.15 -2.53 5.78 -26.61 -0.15 -2.69 16 14 C 0.18 3.34 2.53 -67.89 -0.17 3.17 16 15 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 16 N -0.72 -16.29 3.64 -53.39 -0.19 -16.49 16 17 C -0.24 -6.09 9.93 -15.06 -0.15 -6.24 16 18 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 19 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -26.66 13.06 55.49 0.72 -25.93 16 21 Si 0.90 21.60 29.55 -169.99 -5.02 16.58 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 C -0.11 -1.79 2.67 -90.49 -0.24 -2.03 16 26 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 27 C -0.14 -2.19 9.05 37.15 0.34 -1.85 16 28 C 0.12 2.03 5.42 -3.70 -0.02 2.01 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.01 8.01 -51.93 -0.42 0.59 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.09 1.64 7.74 -51.93 -0.40 1.24 16 36 H 0.06 0.99 6.24 -51.93 -0.32 0.67 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.38 9.31 5.92 -40.82 -0.24 9.07 16 40 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.07 1.32 7.54 -51.93 -0.39 0.93 16 42 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.09 1.45 7.00 -51.93 -0.36 1.09 16 45 H 0.08 1.44 6.64 -51.93 -0.34 1.10 16 LS Contribution 371.19 15.07 5.59 5.59 Total: -1.00 -31.31 371.19 -6.51 -37.82 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -6.68 Total: 7.29 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -0.70 Total: 5.38 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: 0.17 Total: -60.75 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.31 -6.51 -37.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036282263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.429 kcal (2) G-P(sol) polarization free energy of solvation -31.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds