Wall clock time and date at job start Tue Mar 31 2020 14:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30378 * 125.96443 * 2 1 4 4 N 1.39909 * 109.01948 * 179.97438 * 3 2 1 5 5 C 1.46509 * 125.73975 * 180.02562 * 4 3 2 6 6 C 1.34421 * 108.51712 * 359.72137 * 4 3 2 7 7 F 1.35092 * 126.34322 * 180.29092 * 6 4 3 8 8 C 1.38495 * 107.30585 * 0.43231 * 6 4 3 9 9 C 1.47175 * 126.45658 * 179.83377 * 8 6 4 10 10 O 1.21632 * 119.99916 * 269.69066 * 9 8 6 11 11 N 1.34766 * 119.99975 * 89.68847 * 9 8 6 12 12 C 1.46929 * 120.63348 * 0.02562 * 11 9 8 13 13 C 1.53196 * 108.77486 * 233.63046 * 12 11 9 14 14 C 1.53035 * 109.30995 * 305.36045 * 13 12 11 15 15 H 1.09004 * 109.45792 * 181.38956 * 14 13 12 16 16 N 1.46498 * 109.46284 * 301.34321 * 14 13 12 17 17 C 1.36938 * 120.00234 * 275.00456 * 16 14 13 18 18 H 1.08001 * 119.99703 * 359.97438 * 17 16 14 19 19 C 1.38810 * 119.99951 * 179.97438 * 17 16 14 20 20 N 1.31623 * 119.99908 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00020 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46863 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47029 * 119.99682 * 21 19 17 24 24 H 1.48492 * 109.47229 * 239.99978 * 21 19 17 25 25 C 1.53042 * 109.54021 * 61.36728 * 14 13 12 26 26 H 1.09006 * 109.49541 * 58.58370 * 25 14 13 27 27 C 1.52994 * 109.49646 * 178.67720 * 25 14 13 28 28 C 1.46924 * 120.63242 * 180.02562 * 11 9 8 29 29 H 1.08995 * 109.47407 * 270.03005 * 1 2 3 30 30 H 1.09006 * 109.46792 * 30.03225 * 1 2 3 31 31 H 1.09001 * 109.46797 * 150.02213 * 1 2 3 32 32 H 1.09001 * 109.46884 * 89.97547 * 5 4 3 33 33 H 1.09005 * 109.46808 * 209.96703 * 5 4 3 34 34 H 1.08992 * 109.47302 * 329.96745 * 5 4 3 35 35 H 1.08998 * 109.59209 * 113.83860 * 12 11 9 36 36 H 1.09003 * 109.58217 * 353.41142 * 12 11 9 37 37 H 1.09001 * 109.49651 * 65.31212 * 13 12 11 38 38 H 1.09001 * 109.49244 * 185.40784 * 13 12 11 39 39 H 0.97003 * 119.99548 * 95.00108 * 16 14 13 40 40 H 0.97003 * 119.99867 * 179.97438 * 20 19 17 41 41 H 1.09003 * 109.47178 * 60.00867 * 27 25 14 42 42 H 1.09004 * 109.46673 * 179.97438 * 27 25 14 43 43 H 1.08992 * 109.48072 * 299.99991 * 27 25 14 44 44 H 1.08999 * 109.58511 * 6.58326 * 28 11 9 45 45 H 1.08999 * 109.58969 * 246.15926 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0553 0.0000 4 7 3.6111 0.6475 0.0006 5 6 4.7763 1.5356 0.0013 6 6 3.6480 -0.6962 0.0072 7 9 4.7577 -1.4666 0.0153 8 6 2.3375 -1.1443 0.0008 9 6 1.8931 -2.5474 0.0011 10 8 1.7099 -3.1275 -1.0522 11 7 1.6892 -3.1894 1.1683 12 6 1.9058 -2.5019 2.4486 13 6 2.8656 -3.3380 3.3010 14 6 2.3151 -4.7594 3.4362 15 1 2.9838 -5.3497 4.0628 16 7 0.9862 -4.7118 4.0509 17 6 0.8632 -4.6752 5.4142 18 1 1.7460 -4.6818 6.0363 19 6 -0.3960 -4.6295 5.9966 20 7 -1.4718 -4.6209 5.2383 21 14 -0.5637 -4.5803 7.8564 22 1 0.7858 -4.5985 8.4757 23 1 -1.2747 -3.3395 8.2565 24 1 -1.3355 -5.7630 8.3153 25 6 2.2136 -5.4029 2.0513 26 1 3.1980 -5.4162 1.5833 27 6 1.6943 -6.8353 2.1906 28 6 1.2460 -4.5901 1.1848 29 1 -0.3634 0.0005 1.0276 30 1 -0.3633 0.8898 -0.5144 31 1 -0.3633 -0.8902 -0.5135 32 1 5.0644 1.7560 1.0292 33 1 5.6052 1.0478 -0.5117 34 1 4.5262 2.4635 -0.5130 35 1 0.9549 -2.3923 2.9701 36 1 2.3404 -1.5190 2.2666 37 1 3.8438 -3.3707 2.8212 38 1 2.9596 -2.8886 4.2896 39 1 0.1933 -4.7062 3.4920 40 1 -2.3518 -4.5894 5.6452 41 1 0.7093 -6.8209 2.6573 42 1 1.6217 -7.2929 1.2040 43 1 2.3812 -7.4123 2.8095 44 1 1.2453 -4.9851 0.1689 45 1 0.2414 -4.6507 1.6033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036282263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:16 Heat of formation + Delta-G solvation = -4.363422 kcal Electronic energy + Delta-G solvation = -29048.186905 eV Core-core repulsion = 25016.716977 eV Total energy + Delta-G solvation = -4031.469927 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.46670 -42.58031 -41.03277 -39.01815 -35.85663 -35.24946 -34.40219 -32.99474 -31.57599 -30.91158 -30.49831 -27.96704 -27.06078 -26.19105 -25.27579 -23.32792 -23.05941 -21.85951 -20.90011 -19.80264 -19.23540 -18.75981 -18.20902 -17.65956 -17.22440 -17.11564 -16.56910 -16.01746 -15.81687 -15.75265 -15.51780 -15.31448 -14.85380 -14.62820 -14.50656 -14.45068 -14.22660 -14.07465 -13.71246 -13.58676 -13.30618 -13.09305 -12.97446 -12.92885 -12.86139 -12.66595 -12.41642 -12.06683 -12.04229 -11.96527 -11.88251 -11.56307 -11.17371 -11.09253 -10.84846 -10.42984 -9.84008 -9.63775 -8.89338 -7.85517 -5.11437 0.20486 0.86275 1.09691 1.37037 1.50646 1.52536 1.60444 2.04439 2.62167 2.71341 3.19462 3.48281 3.63025 3.73052 3.88297 3.92160 4.04493 4.09114 4.10909 4.22363 4.30861 4.31835 4.40408 4.55121 4.58587 4.63369 4.68065 4.72092 4.73682 4.84747 4.87166 4.95470 5.04768 5.15206 5.21950 5.26781 5.28458 5.31906 5.49816 5.61102 5.62108 5.65358 6.21759 6.36039 6.36608 7.03627 7.44362 8.19689 8.44241 9.37758 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.014485 B = 0.003945 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.618018 B = 7096.343953 C = 7634.017606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.128 3.872 3 N -0.278 5.278 4 N -0.366 5.366 5 C 0.081 3.919 6 C 0.291 3.709 7 F -0.086 7.086 8 C -0.305 4.305 9 C 0.599 3.401 10 O -0.575 6.575 11 N -0.586 5.586 12 C 0.131 3.869 13 C -0.141 4.141 14 C 0.174 3.826 15 H 0.049 0.951 16 N -0.723 5.723 17 C -0.226 4.226 18 H 0.074 0.926 19 C -0.069 4.069 20 N -0.966 5.966 21 Si 0.960 3.040 22 H -0.269 1.269 23 H -0.299 1.299 24 H -0.300 1.300 25 C -0.099 4.099 26 H 0.084 0.916 27 C -0.130 4.130 28 C 0.123 3.877 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.375 0.625 40 H 0.247 0.753 41 H 0.042 0.958 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.087 0.913 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.823 10.780 -10.872 19.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.038 4.038 3 N -0.101 5.101 4 N -0.150 5.150 5 C -0.058 4.058 6 C 0.142 3.858 7 F -0.065 7.065 8 C -0.321 4.321 9 C 0.386 3.614 10 O -0.455 6.455 11 N -0.316 5.316 12 C 0.009 3.991 13 C -0.182 4.182 14 C 0.065 3.935 15 H 0.067 0.933 16 N -0.364 5.364 17 C -0.358 4.358 18 H 0.092 0.908 19 C -0.262 4.262 20 N -0.617 5.617 21 Si 0.791 3.209 22 H -0.193 1.193 23 H -0.226 1.226 24 H -0.228 1.228 25 C -0.119 4.119 26 H 0.102 0.898 27 C -0.188 4.188 28 C 0.001 3.999 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.094 0.906 32 H 0.119 0.881 33 H 0.128 0.872 34 H 0.135 0.865 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.208 0.792 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.105 0.895 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.020 11.806 -11.219 20.851 hybrid contribution -0.360 -1.084 1.053 1.554 sum 12.660 10.721 -10.166 19.457 Atomic orbital electron populations 1.20405 0.84056 1.04721 1.04604 1.22460 0.98099 0.87509 0.95719 1.77272 0.84784 1.20938 1.27129 1.49029 1.07889 1.02320 1.55803 1.22530 0.82492 0.94693 1.06053 1.17686 0.82915 0.82662 1.02560 1.91656 1.49379 1.71711 1.93782 1.19594 0.91547 0.95009 1.25951 1.17307 0.76406 0.84681 0.82996 1.90733 1.54090 1.68524 1.32136 1.48075 1.64822 1.12838 1.05913 1.21484 1.00052 0.95164 0.82428 1.22403 0.97905 0.98480 0.99409 1.20407 0.87343 0.93499 0.92203 0.93273 1.42569 1.02620 1.88123 1.03083 1.19583 0.92007 1.39739 0.84450 0.90802 1.25327 0.95509 1.04469 1.00866 1.69801 0.97104 1.60086 1.34749 0.85259 0.77470 0.76235 0.81913 1.19307 1.22638 1.22797 1.21641 0.99251 0.95536 0.95442 0.89796 1.21590 1.01213 0.94515 1.01499 1.21605 0.97565 0.79842 1.00934 0.88869 0.87936 0.90633 0.88087 0.87205 0.86541 0.92257 0.90254 0.91228 0.91478 0.79150 0.94387 0.93918 0.91604 0.92160 0.89503 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.77 10.28 71.24 0.73 -1.03 16 2 C 0.13 3.40 7.26 43.55 0.32 3.72 16 3 N -0.28 -6.86 12.49 -46.64 -0.58 -7.45 16 4 N -0.37 -7.74 3.98 -368.85 -1.47 -9.21 16 5 C 0.08 0.82 11.43 127.77 1.46 2.28 16 6 C 0.29 7.42 8.58 84.36 0.72 8.15 16 7 F -0.09 -2.09 17.31 44.97 0.78 -1.32 16 8 C -0.30 -9.00 3.88 -20.09 -0.08 -9.08 16 9 C 0.60 20.52 7.24 86.59 0.63 21.15 16 10 O -0.57 -22.97 16.52 -4.13 -0.07 -23.04 16 11 N -0.59 -19.52 2.97 -823.02 -2.45 -21.96 16 12 C 0.13 4.29 6.08 86.36 0.53 4.81 16 13 C -0.14 -4.57 5.78 30.67 0.18 -4.39 16 14 C 0.17 6.32 2.53 45.02 0.11 6.44 16 15 H 0.05 1.82 8.08 -2.38 -0.02 1.80 16 16 N -0.72 -32.98 3.64 -322.82 -1.18 -34.15 16 17 C -0.23 -11.61 9.93 84.03 0.83 -10.78 16 18 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 19 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 20 N -0.97 -56.58 13.06 21.65 0.28 -56.29 16 21 Si 0.96 44.71 29.55 68.60 2.03 46.74 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 23 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 24 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 25 C -0.10 -3.15 2.67 -10.71 -0.03 -3.18 16 26 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 27 C -0.13 -4.05 9.05 71.98 0.65 -3.40 16 28 C 0.12 4.18 5.42 86.37 0.47 4.65 16 29 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.07 1.81 8.01 -2.39 -0.02 1.79 16 32 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.11 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.06 2.29 7.74 -2.39 -0.02 2.27 16 36 H 0.08 2.36 6.24 -2.39 -0.01 2.35 16 37 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.37 18.64 5.92 -92.71 -0.55 18.09 16 40 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 41 H 0.04 1.58 7.54 -2.39 -0.02 1.56 16 42 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.09 2.94 7.00 -2.39 -0.02 2.93 16 45 H 0.06 2.24 6.64 -2.39 -0.02 2.22 16 Total: -1.00 -67.16 371.19 4.80 -62.36 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: 0.46 Total: 28.31 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: 6.99 Total: 16.02 kcal Atomic # 7 Polarization: -123.68 SS G_CDS: -5.39 Total: -129.07 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.07 Total: -23.04 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.78 Total: -1.32 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -67.16 4.80 -62.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036282263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.998 kcal (2) G-P(sol) polarization free energy of solvation -67.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds