Wall clock time and date at job start Tue Mar 31 2020 14:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30374 * 125.96512 * 2 1 4 4 N 1.39918 * 109.01732 * 179.88818 * 3 2 1 5 5 C 1.46502 * 125.74017 * 180.16565 * 4 3 2 6 6 C 1.34409 * 108.51506 * 0.38827 * 4 3 2 7 7 F 1.35105 * 126.34180 * 179.74314 * 6 4 3 8 8 C 1.38498 * 107.31429 * 359.77217 * 6 4 3 9 9 C 1.47167 * 126.46168 * 180.02562 * 8 6 4 10 10 O 1.21631 * 120.00268 * 269.98359 * 9 8 6 11 11 N 1.34778 * 120.00091 * 89.97778 * 9 8 6 12 12 C 1.46930 * 120.62512 * 359.72240 * 11 9 8 13 13 C 1.53636 * 108.54139 * 126.36774 * 12 11 9 14 14 C 1.53041 * 109.23977 * 54.85551 * 13 12 11 15 15 H 1.08997 * 109.46081 * 178.49079 * 14 13 12 16 16 N 1.46504 * 109.44808 * 58.52373 * 14 13 12 17 17 C 1.36936 * 119.99882 * 84.94205 * 16 14 13 18 18 H 1.07999 * 120.00050 * 359.97438 * 17 16 14 19 19 C 1.38810 * 119.99930 * 180.02562 * 17 16 14 20 20 N 1.31624 * 120.00218 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99670 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47365 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47384 * 119.99730 * 21 19 17 24 24 H 1.48506 * 109.47003 * 239.99264 * 21 19 17 25 25 C 1.53043 * 109.54006 * 298.51245 * 14 13 12 26 26 H 1.09007 * 109.49723 * 301.41719 * 25 14 13 27 27 C 1.52998 * 109.50030 * 181.31464 * 25 14 13 28 28 C 1.46919 * 120.63330 * 180.02562 * 11 9 8 29 29 H 1.09001 * 109.46953 * 269.68631 * 1 2 3 30 30 H 1.09000 * 109.47318 * 29.68229 * 1 2 3 31 31 H 1.09000 * 109.47161 * 149.68860 * 1 2 3 32 32 H 1.08994 * 109.46783 * 270.25922 * 5 4 3 33 33 H 1.08999 * 109.47115 * 30.26164 * 5 4 3 34 34 H 1.08995 * 109.47169 * 150.25950 * 5 4 3 35 35 H 1.08999 * 109.58819 * 246.19972 * 12 11 9 36 36 H 1.08997 * 109.58771 * 6.62718 * 12 11 9 37 37 H 1.08991 * 109.63181 * 294.86709 * 13 12 11 38 38 H 1.08992 * 109.45861 * 174.73863 * 13 12 11 39 39 H 0.97002 * 120.00217 * 264.93755 * 16 14 13 40 40 H 0.96995 * 119.99867 * 180.02562 * 20 19 17 41 41 H 1.08997 * 109.47325 * 300.16442 * 27 25 14 42 42 H 1.09006 * 109.46738 * 60.16231 * 27 25 14 43 43 H 1.09001 * 109.47397 * 180.15834 * 27 25 14 44 44 H 1.08996 * 109.59055 * 353.37773 * 28 11 9 45 45 H 1.09008 * 109.58577 * 113.65796 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6112 0.6474 0.0026 5 6 4.7764 1.5354 0.0068 6 6 3.6479 -0.6962 -0.0045 7 9 4.7577 -1.4667 -0.0095 8 6 2.3375 -1.1444 -0.0062 9 6 1.8930 -2.5474 -0.0129 10 8 1.7087 -3.1220 -1.0689 11 7 1.6902 -3.1955 1.1513 12 6 1.9146 -2.5167 2.4349 13 6 0.6434 -2.6510 3.2873 14 6 0.2761 -4.1311 3.4152 15 1 -0.6101 -4.2325 4.0417 16 7 1.3912 -4.8595 4.0255 17 6 1.5143 -4.9060 5.3885 18 1 0.7897 -4.4054 6.0136 19 6 2.5711 -5.5957 5.9667 20 7 3.4546 -6.2053 5.2050 21 14 2.7395 -5.6585 7.8261 22 1 1.6265 -4.8986 8.4499 23 1 2.6903 -7.0716 8.2802 24 1 4.0359 -5.0549 8.2264 25 6 -0.0116 -4.7089 2.0276 26 1 -0.8247 -4.1512 1.5627 27 6 -0.4106 -6.1800 2.1595 28 6 1.2471 -4.5963 1.1609 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3634 0.8928 -0.5089 31 1 -0.3633 -0.8872 -0.5187 32 1 5.0649 1.7609 -1.0197 33 1 4.5260 2.4607 0.5256 34 1 5.6049 1.0451 0.5178 35 1 2.7549 -2.9803 2.9515 36 1 2.1281 -1.4625 2.2583 37 1 -0.1757 -2.1127 2.8106 38 1 0.8249 -2.2343 4.2779 39 1 2.0422 -5.3088 3.4641 40 1 4.1928 -6.6875 5.6091 41 1 0.4024 -6.7366 2.6257 42 1 -1.3059 -6.2597 2.7762 43 1 -0.6127 -6.5919 1.1708 44 1 1.0201 -4.9147 0.1435 45 1 2.0353 -5.2261 1.5736 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036282264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:20 Heat of formation + Delta-G solvation = 14.526308 kcal Electronic energy + Delta-G solvation = -29040.423260 eV Core-core repulsion = 25009.772453 eV Total energy + Delta-G solvation = -4030.650807 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.37802 -41.54452 -39.65666 -37.53887 -34.42997 -34.12160 -32.80188 -31.36693 -30.55802 -29.65752 -29.13251 -26.82101 -25.81811 -24.80680 -23.49092 -22.22266 -21.62420 -20.79072 -19.69828 -18.37226 -17.63929 -17.35803 -17.05500 -16.50615 -16.15645 -15.79459 -14.87354 -14.83642 -14.45655 -14.34258 -14.03435 -13.92955 -13.76185 -13.55324 -13.42207 -13.25253 -12.98853 -12.65318 -12.57053 -12.46701 -12.29283 -12.16240 -11.55198 -11.35729 -11.18852 -11.01169 -10.92388 -10.77617 -10.47556 -10.43456 -10.15939 -9.82386 -9.73472 -9.54293 -9.49659 -8.95079 -8.75088 -8.19477 -6.97051 -5.79069 -3.07300 1.24223 1.75576 2.14868 2.70235 3.36896 3.40720 3.47035 3.48954 3.70880 4.16996 4.57273 4.59553 4.76831 4.84708 4.91935 5.04834 5.11252 5.25618 5.36037 5.39728 5.46195 5.56981 5.59012 5.61905 5.66516 5.76038 5.84406 5.94960 6.09183 6.12735 6.19221 6.27899 6.34771 6.43968 6.51837 6.52788 6.66538 6.71241 6.78756 6.95543 7.03233 7.20908 7.69118 7.72747 8.39514 8.40233 9.51214 10.08401 10.43300 11.43438 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.013798 B = 0.004080 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.803140 B = 6861.916665 C = 7708.796817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.132 3.868 3 N -0.273 5.273 4 N -0.376 5.376 5 C 0.094 3.906 6 C 0.291 3.709 7 F -0.087 7.087 8 C -0.277 4.277 9 C 0.595 3.405 10 O -0.544 6.544 11 N -0.588 5.588 12 C 0.118 3.882 13 C -0.147 4.147 14 C 0.178 3.822 15 H 0.051 0.949 16 N -0.719 5.719 17 C -0.236 4.236 18 H 0.070 0.930 19 C -0.012 4.012 20 N -0.932 5.932 21 Si 0.903 3.097 22 H -0.281 1.281 23 H -0.293 1.293 24 H -0.293 1.293 25 C -0.107 4.107 26 H 0.067 0.933 27 C -0.137 4.137 28 C 0.119 3.881 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.384 0.616 40 H 0.254 0.746 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.044 0.956 44 H 0.085 0.915 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.624 13.955 -10.554 17.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.034 4.034 3 N -0.096 5.096 4 N -0.161 5.161 5 C -0.047 4.047 6 C 0.144 3.856 7 F -0.066 7.066 8 C -0.293 4.293 9 C 0.380 3.620 10 O -0.422 6.422 11 N -0.319 5.319 12 C -0.004 4.004 13 C -0.188 4.188 14 C 0.068 3.932 15 H 0.069 0.931 16 N -0.361 5.361 17 C -0.367 4.367 18 H 0.088 0.912 19 C -0.208 4.208 20 N -0.580 5.580 21 Si 0.734 3.266 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.221 1.221 25 C -0.127 4.127 26 H 0.085 0.915 27 C -0.195 4.195 28 C -0.003 4.003 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.119 0.881 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.219 0.781 40 H 0.064 0.936 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.104 0.896 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.510 14.961 -10.903 18.682 hybrid contribution 1.057 -1.059 1.044 1.825 sum -1.453 13.902 -9.859 17.105 Atomic orbital electron populations 1.20328 0.85222 1.04126 1.03988 1.22169 0.97179 0.87966 0.96108 1.77274 0.84134 1.21174 1.27014 1.48621 1.07237 1.02568 1.57710 1.22049 0.83768 0.94683 1.04178 1.17785 0.83462 0.81798 1.02555 1.91677 1.49614 1.71540 1.93752 1.19670 0.90312 0.95863 1.23454 1.17050 0.77342 0.83911 0.83659 1.90759 1.52636 1.67873 1.30889 1.48069 1.64951 1.13086 1.05823 1.21754 0.99776 0.96138 0.82741 1.22586 0.96125 1.00696 0.99435 1.20226 0.92205 0.89433 0.91334 0.93087 1.42492 1.28242 1.61357 1.04039 1.19263 1.07506 1.26916 0.83022 0.91205 1.24696 0.97900 1.00742 0.97440 1.69660 1.15891 1.39000 1.33489 0.86185 0.77292 0.77215 0.85876 1.20645 1.21976 1.22056 1.21709 0.96614 0.97524 0.96881 0.91471 1.21666 1.02221 0.95221 1.00402 1.21705 0.96838 0.80805 1.01000 0.89390 0.90028 0.89749 0.89998 0.88141 0.88948 0.89860 0.91624 0.93180 0.90900 0.78091 0.93603 0.91053 0.92807 0.93732 0.89644 0.90529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.28 36.01 0.37 -0.42 16 2 C 0.13 1.75 7.18 -82.01 -0.59 1.16 16 3 N -0.27 -3.55 12.49 33.91 0.42 -3.13 16 4 N -0.38 -4.53 3.98 -67.94 -0.27 -4.80 16 5 C 0.09 0.67 11.43 59.85 0.68 1.35 16 6 C 0.29 4.14 8.70 -16.33 -0.14 4.00 16 7 F -0.09 -1.25 17.31 2.25 0.04 -1.21 16 8 C -0.28 -4.22 3.85 -104.97 -0.40 -4.63 16 9 C 0.59 10.30 7.24 -12.63 -0.09 10.21 16 10 O -0.54 -10.87 16.52 5.25 0.09 -10.79 16 11 N -0.59 -9.90 2.97 -173.83 -0.52 -10.41 16 12 C 0.12 1.97 6.11 -3.48 -0.02 1.95 16 13 C -0.15 -2.41 5.80 -26.38 -0.15 -2.56 16 14 C 0.18 3.26 2.53 -67.88 -0.17 3.09 16 15 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 16 N -0.72 -16.36 3.63 -53.38 -0.19 -16.56 16 17 C -0.24 -6.10 9.93 -15.06 -0.15 -6.25 16 18 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 20 N -0.93 -27.01 13.06 55.49 0.72 -26.29 16 21 Si 0.90 21.70 29.55 -169.99 -5.02 16.67 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 C -0.11 -1.72 2.67 -90.48 -0.24 -1.97 16 26 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 27 C -0.14 -2.17 9.06 37.16 0.34 -1.83 16 28 C 0.12 2.02 5.41 -3.69 -0.02 2.00 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.89 8.01 -51.93 -0.42 0.47 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 1.64 7.73 -51.93 -0.40 1.23 16 36 H 0.07 1.01 6.27 -51.93 -0.33 0.68 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.38 9.42 5.93 -40.82 -0.24 9.18 16 40 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.07 1.31 7.53 -51.93 -0.39 0.92 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.09 1.45 7.00 -51.93 -0.36 1.09 16 45 H 0.08 1.45 6.65 -51.92 -0.35 1.10 16 LS Contribution 371.27 15.07 5.59 5.59 Total: -1.00 -31.71 371.27 -6.50 -38.21 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -6.68 Total: 7.00 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -0.69 Total: 5.69 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: 0.17 Total: -61.18 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 9 Polarization: -1.25 SS G_CDS: 0.04 Total: -1.21 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.71 -6.50 -38.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036282264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.741 kcal (2) G-P(sol) polarization free energy of solvation -31.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds