Wall clock time and date at job start Tue Mar 31 2020 14:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30370 * 125.96427 * 2 1 4 4 N 1.39925 * 109.01865 * 179.97438 * 3 2 1 5 5 C 1.46497 * 125.73913 * 179.97438 * 4 3 2 6 6 C 1.34415 * 108.51416 * 359.97438 * 4 3 2 7 7 F 1.35095 * 126.34175 * 180.02562 * 6 4 3 8 8 C 1.38500 * 107.31094 * 359.97438 * 6 4 3 9 9 C 1.47171 * 126.45357 * 180.02562 * 8 6 4 10 10 O 1.21629 * 120.00238 * 89.97583 * 9 8 6 11 11 N 1.34779 * 119.99872 * 269.96936 * 9 8 6 12 12 C 1.46932 * 120.62943 * 359.72566 * 11 9 8 13 13 C 1.53625 * 108.54218 * 126.36594 * 12 11 9 14 14 C 1.53032 * 109.24495 * 54.85518 * 13 12 11 15 15 H 1.09005 * 109.45827 * 58.52720 * 14 13 12 16 16 N 1.46500 * 109.46578 * 178.49026 * 14 13 12 17 17 C 1.36939 * 119.99958 * 275.07035 * 16 14 13 18 18 H 1.07997 * 119.99686 * 359.97438 * 17 16 14 19 19 C 1.38805 * 119.99838 * 179.97438 * 17 16 14 20 20 N 1.31622 * 120.00111 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99930 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47273 * 89.99879 * 21 19 17 23 23 H 1.48501 * 109.47320 * 209.99792 * 21 19 17 24 24 H 1.48507 * 109.46977 * 329.99580 * 21 19 17 25 25 C 1.53043 * 109.53837 * 298.51455 * 14 13 12 26 26 H 1.09006 * 109.49476 * 301.40762 * 25 14 13 27 27 C 1.53001 * 109.49961 * 181.31326 * 25 14 13 28 28 C 1.46925 * 120.63347 * 180.02562 * 11 9 8 29 29 H 1.08999 * 109.46766 * 90.02897 * 1 2 3 30 30 H 1.08998 * 109.47194 * 210.02430 * 1 2 3 31 31 H 1.09003 * 109.47470 * 330.03070 * 1 2 3 32 32 H 1.09003 * 109.47297 * 90.02571 * 5 4 3 33 33 H 1.09000 * 109.46963 * 210.02635 * 5 4 3 34 34 H 1.08999 * 109.47702 * 330.02016 * 5 4 3 35 35 H 1.08996 * 109.58362 * 246.19792 * 12 11 9 36 36 H 1.08999 * 109.58608 * 6.62230 * 12 11 9 37 37 H 1.09005 * 109.63191 * 294.86288 * 13 12 11 38 38 H 1.09000 * 109.43103 * 174.72619 * 13 12 11 39 39 H 0.96996 * 119.99736 * 95.06812 * 16 14 13 40 40 H 0.97001 * 119.99457 * 180.02562 * 20 19 17 41 41 H 1.08999 * 109.47266 * 300.16241 * 27 25 14 42 42 H 1.09002 * 109.47105 * 60.16128 * 27 25 14 43 43 H 1.09003 * 109.47418 * 180.15632 * 27 25 14 44 44 H 1.09002 * 109.58399 * 353.37567 * 28 11 9 45 45 H 1.08997 * 109.58868 * 113.80069 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2726 1.0552 0.0000 4 7 3.6111 0.6474 0.0006 5 6 4.7762 1.5354 0.0002 6 6 3.6479 -0.6963 0.0015 7 9 4.7576 -1.4668 0.0028 8 6 2.3374 -1.1444 0.0021 9 6 1.8931 -2.5475 0.0037 10 8 1.7099 -3.1262 1.0577 11 7 1.6889 -3.1910 -1.1628 12 6 1.9000 -2.5034 -2.4440 13 6 2.8643 -3.3428 -3.2959 14 6 2.3129 -4.7641 -3.4292 15 1 1.3238 -4.7285 -3.8860 16 7 3.2106 -5.5591 -4.2707 17 6 3.0837 -5.5213 -5.6337 18 1 2.3215 -4.9057 -6.0881 19 6 3.9347 -6.2741 -6.4311 20 7 4.8639 -7.0239 -5.8772 21 14 3.7620 -6.2220 -8.2904 22 1 4.6149 -5.1359 -8.8365 23 1 4.1900 -7.5232 -8.8639 24 1 2.3438 -5.9656 -8.6488 25 6 2.2116 -5.4058 -2.0435 26 1 3.1962 -5.4193 -1.5759 27 6 1.6911 -6.8380 -2.1807 28 6 1.2448 -4.5914 -1.1774 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3634 0.8903 0.5134 32 1 5.0653 1.7560 1.0278 33 1 5.6047 1.0477 -0.5135 34 1 4.5258 2.4633 -0.5139 35 1 0.9474 -2.3972 -2.9629 36 1 2.3319 -1.5190 -2.2636 37 1 3.8427 -3.3756 -2.8165 38 1 2.9581 -2.8947 -4.2851 39 1 3.8949 -6.1122 -3.8625 40 1 5.4587 -7.5497 -6.4345 41 1 0.7073 -6.8238 -2.6497 42 1 2.3790 -7.4170 -2.7970 43 1 1.6165 -7.2938 -1.1934 44 1 1.2442 -4.9852 -0.1610 45 1 0.2400 -4.6518 -1.5954 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036282265.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:23 Heat of formation + Delta-G solvation = -8.795829 kcal Electronic energy + Delta-G solvation = -28598.804088 eV Core-core repulsion = 24567.141957 eV Total energy + Delta-G solvation = -4031.662131 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.49171 -42.57811 -40.96818 -38.93710 -36.16561 -35.26235 -34.39201 -33.05468 -31.61017 -30.99060 -30.46136 -27.97870 -27.05868 -26.37610 -24.59038 -23.22305 -23.04664 -21.85735 -21.16899 -20.37667 -19.07475 -18.78603 -18.22264 -17.70562 -17.22618 -17.13610 -16.74607 -15.88434 -15.77206 -15.73488 -15.48389 -15.36562 -14.91586 -14.64629 -14.49406 -14.41912 -14.21953 -13.85983 -13.73532 -13.60861 -13.27992 -13.15548 -13.04609 -12.91087 -12.83519 -12.74262 -12.46800 -12.14221 -12.08573 -12.02912 -11.82444 -11.65375 -11.16347 -11.12391 -10.85572 -10.43152 -9.85084 -9.70884 -8.95428 -7.89655 -5.17342 0.19228 0.85232 1.12231 1.35562 1.49765 1.50358 1.58726 2.02837 2.59215 2.73773 3.20073 3.43569 3.60614 3.73311 3.80527 3.87238 4.02830 4.07865 4.11605 4.22288 4.28024 4.31802 4.38393 4.51768 4.56546 4.67169 4.76043 4.76420 4.80323 4.80643 4.85017 4.88846 4.96381 5.03769 5.20356 5.30577 5.33681 5.41985 5.50607 5.57464 5.58769 5.63758 6.22768 6.30459 6.32425 7.02545 7.38236 8.14298 8.37591 9.34058 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.015383 B = 0.003489 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.739386 B = 8022.651129 C = 8750.863134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.132 3.868 3 N -0.278 5.278 4 N -0.368 5.368 5 C 0.081 3.919 6 C 0.282 3.718 7 F -0.094 7.094 8 C -0.304 4.304 9 C 0.601 3.399 10 O -0.573 6.573 11 N -0.593 5.593 12 C 0.123 3.877 13 C -0.141 4.141 14 C 0.181 3.819 15 H 0.055 0.945 16 N -0.732 5.732 17 C -0.230 4.230 18 H 0.079 0.921 19 C -0.076 4.076 20 N -0.972 5.972 21 Si 0.967 3.033 22 H -0.291 1.291 23 H -0.301 1.301 24 H -0.267 1.267 25 C -0.101 4.101 26 H 0.048 0.952 27 C -0.129 4.129 28 C 0.126 3.874 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.119 0.881 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.037 0.963 38 H 0.066 0.934 39 H 0.370 0.630 40 H 0.248 0.752 41 H 0.062 0.938 42 H 0.039 0.961 43 H 0.064 0.936 44 H 0.087 0.913 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.496 18.137 12.319 23.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.034 4.034 3 N -0.101 5.101 4 N -0.152 5.152 5 C -0.058 4.058 6 C 0.133 3.867 7 F -0.073 7.073 8 C -0.320 4.320 9 C 0.388 3.612 10 O -0.452 6.452 11 N -0.323 5.323 12 C 0.000 4.000 13 C -0.182 4.182 14 C 0.072 3.928 15 H 0.073 0.927 16 N -0.371 5.371 17 C -0.362 4.362 18 H 0.097 0.903 19 C -0.268 4.268 20 N -0.623 5.623 21 Si 0.797 3.203 22 H -0.218 1.218 23 H -0.228 1.228 24 H -0.192 1.192 25 C -0.121 4.121 26 H 0.066 0.934 27 C -0.186 4.186 28 C 0.004 3.996 29 H 0.124 0.876 30 H 0.098 0.902 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.137 0.863 35 H 0.114 0.886 36 H 0.100 0.900 37 H 0.056 0.944 38 H 0.085 0.915 39 H 0.201 0.799 40 H 0.057 0.943 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.083 0.917 44 H 0.105 0.895 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.453 19.206 12.674 24.188 hybrid contribution 1.507 -1.605 -0.965 2.404 sum -5.946 17.601 11.709 21.960 Atomic orbital electron populations 1.20462 0.83098 1.04803 1.05250 1.22608 0.98452 0.86972 0.95411 1.77275 0.84499 1.21216 1.27084 1.49011 1.08056 1.02202 1.55974 1.22491 0.82632 0.94768 1.05888 1.17904 0.83157 0.82792 1.02808 1.91662 1.49926 1.71907 1.93817 1.19624 0.91184 0.95284 1.25921 1.17284 0.76195 0.84627 0.83111 1.90750 1.53722 1.68581 1.32182 1.48149 1.65308 1.12926 1.05936 1.21849 1.00474 0.95201 0.82444 1.22556 0.98257 0.98076 0.99309 1.20421 0.93319 0.89384 0.89652 0.92720 1.42604 1.38874 1.53035 1.02541 1.19617 1.12221 1.20446 0.83897 0.90285 1.25476 0.98924 1.00494 1.01902 1.69828 1.23262 1.34028 1.35195 0.85225 0.77926 0.76123 0.81019 1.21807 1.22791 1.19174 1.21628 0.98707 0.96178 0.95607 0.93354 1.21566 1.01158 0.94617 1.01302 1.21717 0.97779 0.79022 1.01074 0.87631 0.90227 0.88293 0.88210 0.87800 0.86274 0.88575 0.89956 0.94372 0.91529 0.79863 0.94327 0.91879 0.94184 0.91665 0.89506 0.88734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 10.28 71.24 0.73 -0.41 16 2 C 0.13 2.87 7.26 43.55 0.32 3.19 16 3 N -0.28 -6.03 12.49 -46.64 -0.58 -6.61 16 4 N -0.37 -7.53 3.98 -368.87 -1.47 -9.00 16 5 C 0.08 0.87 11.43 127.77 1.46 2.33 16 6 C 0.28 7.19 8.60 84.36 0.73 7.92 16 7 F -0.09 -2.56 17.31 44.97 0.78 -1.78 16 8 C -0.30 -8.06 3.87 -20.09 -0.08 -8.14 16 9 C 0.60 18.27 7.24 86.59 0.63 18.90 16 10 O -0.57 -21.06 16.52 -4.12 -0.07 -21.12 16 11 N -0.59 -16.41 2.97 -822.15 -2.44 -18.85 16 12 C 0.12 3.12 6.37 86.51 0.55 3.67 16 13 C -0.14 -4.69 5.67 30.82 0.17 -4.52 16 14 C 0.18 6.68 2.19 45.02 0.10 6.78 16 15 H 0.05 1.98 8.08 -2.38 -0.02 1.96 16 16 N -0.73 -35.43 4.41 -322.82 -1.42 -36.85 16 17 C -0.23 -12.21 9.93 84.03 0.83 -11.38 16 18 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 19 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 20 N -0.97 -59.04 13.06 21.65 0.28 -58.75 16 21 Si 0.97 45.28 29.55 68.60 2.03 47.31 16 22 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 23 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 25 C -0.10 -3.31 2.46 -10.70 -0.03 -3.33 16 26 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 27 C -0.13 -4.09 9.02 71.98 0.65 -3.44 16 28 C 0.13 3.47 5.72 86.38 0.49 3.96 16 29 H 0.11 1.16 8.14 -2.39 -0.02 1.15 16 30 H 0.08 1.26 8.01 -2.39 -0.02 1.24 16 31 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.08 1.98 6.26 -2.39 -0.01 1.96 16 37 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.37 19.84 7.50 -92.71 -0.70 19.15 16 40 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 41 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.04 1.54 7.36 -2.39 -0.02 1.53 16 43 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.09 2.50 7.00 -2.39 -0.02 2.49 16 45 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -71.68 375.19 4.44 -67.23 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: 0.31 Total: 26.71 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 7.03 Total: 11.72 kcal Atomic # 7 Polarization: -124.44 SS G_CDS: -5.63 Total: -130.07 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.07 Total: -21.12 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.78 Total: -1.78 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -71.68 4.44 -67.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036282265.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.439 kcal (2) G-P(sol) polarization free energy of solvation -71.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds