Wall clock time and date at job start Tue Mar 31 2020 14:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30368 * 125.97000 * 2 1 4 4 N 1.39923 * 109.02161 * 180.28696 * 3 2 1 5 5 C 1.46499 * 125.74258 * 179.73143 * 4 3 2 6 6 C 1.34411 * 108.51139 * 359.70876 * 4 3 2 7 7 F 1.35098 * 126.34500 * 179.97438 * 6 4 3 8 8 C 1.38504 * 107.31750 * 0.02562 * 6 4 3 9 9 C 1.47161 * 126.46472 * 179.97438 * 8 6 4 10 10 O 1.21635 * 119.99690 * 90.02196 * 9 8 6 11 11 N 1.34773 * 120.00434 * 270.02850 * 9 8 6 12 12 C 1.46926 * 120.62904 * 359.97438 * 11 9 8 13 13 C 1.53192 * 108.77820 * 233.58715 * 12 11 9 14 14 C 1.53033 * 109.31270 * 305.36633 * 13 12 11 15 15 H 1.09002 * 109.44693 * 301.34841 * 14 13 12 16 16 N 1.46494 * 109.46160 * 181.38322 * 14 13 12 17 17 C 1.36940 * 120.00155 * 84.92863 * 16 14 13 18 18 H 1.08006 * 120.00048 * 0.02562 * 17 16 14 19 19 C 1.38807 * 120.00422 * 179.97438 * 17 16 14 20 20 N 1.31626 * 119.99769 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00528 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46853 * 59.99884 * 21 19 17 23 23 H 1.48498 * 109.47526 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47210 * 300.00390 * 21 19 17 25 25 C 1.53041 * 109.53898 * 61.36218 * 14 13 12 26 26 H 1.08994 * 109.52286 * 58.60459 * 25 14 13 27 27 C 1.53004 * 109.49660 * 178.68381 * 25 14 13 28 28 C 1.46927 * 120.63516 * 179.97438 * 11 9 8 29 29 H 1.09003 * 109.47201 * 270.19266 * 1 2 3 30 30 H 1.09001 * 109.47286 * 30.18528 * 1 2 3 31 31 H 1.09000 * 109.47489 * 150.19070 * 1 2 3 32 32 H 1.08996 * 109.47098 * 269.97158 * 5 4 3 33 33 H 1.08995 * 109.46893 * 29.97391 * 5 4 3 34 34 H 1.08998 * 109.46647 * 149.97150 * 5 4 3 35 35 H 1.09006 * 109.58406 * 353.37631 * 12 11 9 36 36 H 1.09002 * 109.59019 * 113.79619 * 12 11 9 37 37 H 1.09000 * 109.49511 * 65.31256 * 13 12 11 38 38 H 1.08995 * 109.49883 * 185.40976 * 13 12 11 39 39 H 0.97004 * 120.00246 * 264.93183 * 16 14 13 40 40 H 0.97001 * 120.00176 * 179.97438 * 20 19 17 41 41 H 1.09004 * 109.46885 * 179.83832 * 27 25 14 42 42 H 1.08992 * 109.47045 * 299.83708 * 27 25 14 43 43 H 1.09000 * 109.47338 * 59.84089 * 27 25 14 44 44 H 1.08997 * 109.58859 * 246.20187 * 28 11 9 45 45 H 1.09001 * 109.58530 * 6.48424 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0551 0.0000 4 7 3.6112 0.6472 -0.0066 5 6 4.7764 1.5352 -0.0143 6 6 3.6479 -0.6964 -0.0042 7 9 4.7575 -1.4671 -0.0094 8 6 2.3374 -1.1446 0.0033 9 6 1.8928 -2.5474 0.0077 10 8 1.7143 -3.1255 1.0629 11 7 1.6837 -3.1918 -1.1574 12 6 1.8947 -2.5069 -2.4400 13 6 0.6243 -2.6408 -3.2854 14 6 0.2570 -4.1207 -3.4162 15 1 1.0843 -4.6606 -3.8769 16 7 -0.9389 -4.2548 -4.2516 17 6 -0.8202 -4.2975 -5.6152 18 1 0.1550 -4.2327 -6.0747 19 6 -1.9533 -4.4251 -6.4069 20 7 -3.1418 -4.5046 -5.8469 21 14 -1.7914 -4.4841 -8.2669 22 1 -0.9506 -5.6454 -8.6540 23 1 -3.1383 -4.6222 -8.8769 24 1 -1.1566 -3.2310 -8.7485 25 6 -0.0224 -4.7032 -2.0288 26 1 -0.8332 -4.1481 -1.5572 27 6 -0.4213 -6.1741 -2.1635 28 6 1.2403 -4.5925 -1.1692 29 1 -0.3634 0.0035 1.0277 30 1 -0.3634 0.8883 -0.5167 31 1 -0.3634 -0.8917 -0.5109 32 1 5.0601 1.7534 -1.0438 33 1 4.5285 2.4642 0.4990 34 1 5.6074 1.0485 0.4962 35 1 2.1050 -1.4524 -2.2608 36 1 2.7331 -2.9646 -2.9652 37 1 -0.1925 -2.1046 -2.8022 38 1 0.8003 -2.2208 -4.2757 39 1 -1.8148 -4.3133 -3.8390 40 1 -3.9337 -4.5934 -6.4001 41 1 -0.6174 -6.5894 -1.1749 42 1 -1.3201 -6.2523 -2.7751 43 1 0.3893 -6.7287 -2.6362 44 1 2.0251 -5.2207 -1.5905 45 1 1.0212 -4.9150 -0.1513 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036282266.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:28 Heat of formation + Delta-G solvation = 12.284682 kcal Electronic energy + Delta-G solvation = -28577.074976 eV Core-core repulsion = 24546.326965 eV Total energy + Delta-G solvation = -4030.748011 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.54503 -41.65060 -39.74578 -37.53781 -34.63127 -34.37937 -32.83089 -31.46202 -30.66307 -29.74066 -29.25019 -26.91339 -25.89159 -24.90091 -23.06897 -22.11568 -21.62245 -20.88540 -19.93074 -19.13123 -17.85257 -17.26856 -17.05691 -16.66715 -16.27525 -15.97791 -14.98096 -14.95012 -14.68353 -14.35185 -14.06275 -13.84913 -13.72792 -13.65770 -13.54723 -13.29542 -13.07737 -12.71081 -12.58467 -12.41198 -12.35551 -12.22512 -11.71625 -11.55830 -11.19004 -11.09114 -10.92336 -10.80085 -10.61321 -10.39057 -10.22973 -9.90866 -9.73509 -9.61243 -9.58377 -8.95584 -8.83582 -8.45900 -6.96363 -5.77638 -3.06181 1.12514 1.65228 2.06069 2.54329 3.17452 3.42452 3.47433 3.48207 3.58029 4.05553 4.49176 4.57485 4.67760 4.70952 4.84570 4.95810 5.01382 5.11766 5.27452 5.31773 5.40427 5.48316 5.53834 5.57500 5.63991 5.68392 5.70840 5.81291 5.99155 6.10025 6.11356 6.19877 6.32622 6.40516 6.41868 6.45029 6.55120 6.65468 6.82771 6.93782 7.06554 7.12747 7.50771 7.68051 8.22967 8.40775 9.52166 10.09727 10.44708 11.44764 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.016513 B = 0.003363 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.215921 B = 8323.912407 C = 8930.453680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.136 3.864 3 N -0.271 5.271 4 N -0.376 5.376 5 C 0.094 3.906 6 C 0.288 3.712 7 F -0.089 7.089 8 C -0.279 4.279 9 C 0.598 3.402 10 O -0.538 6.538 11 N -0.594 5.594 12 C 0.110 3.890 13 C -0.149 4.149 14 C 0.184 3.816 15 H 0.047 0.953 16 N -0.720 5.720 17 C -0.238 4.238 18 H 0.069 0.931 19 C -0.012 4.012 20 N -0.932 5.932 21 Si 0.905 3.095 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.287 1.287 25 C -0.109 4.109 26 H 0.071 0.929 27 C -0.136 4.136 28 C 0.120 3.880 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.043 0.957 42 H 0.074 0.926 43 H 0.050 0.950 44 H 0.067 0.933 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.394 9.662 12.492 21.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.031 4.031 3 N -0.093 5.093 4 N -0.161 5.161 5 C -0.047 4.047 6 C 0.141 3.859 7 F -0.068 7.068 8 C -0.295 4.295 9 C 0.383 3.617 10 O -0.415 6.415 11 N -0.326 5.326 12 C -0.013 4.013 13 C -0.191 4.191 14 C 0.073 3.927 15 H 0.065 0.935 16 N -0.360 5.360 17 C -0.369 4.369 18 H 0.087 0.913 19 C -0.208 4.208 20 N -0.580 5.580 21 Si 0.736 3.264 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.214 1.214 25 C -0.129 4.129 26 H 0.089 0.911 27 C -0.194 4.194 28 C -0.003 4.003 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.093 0.907 43 H 0.069 0.931 44 H 0.085 0.915 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 14.551 10.646 12.845 22.137 hybrid contribution 0.324 -0.833 -1.098 1.416 sum 14.875 9.813 11.746 21.343 Atomic orbital electron populations 1.20367 0.84964 1.04582 1.04007 1.22233 0.97303 0.87859 0.95668 1.77330 0.84024 1.21101 1.26868 1.48660 1.07342 1.02518 1.57575 1.22053 0.83621 0.94650 1.04371 1.17750 0.83296 0.81856 1.02980 1.91652 1.49726 1.71605 1.93862 1.19662 0.90320 0.95798 1.23703 1.17053 0.77110 0.83938 0.83575 1.90774 1.52188 1.67621 1.30901 1.48109 1.65557 1.13182 1.05770 1.21820 0.99230 0.96835 0.83411 1.22677 0.95462 1.01639 0.99288 1.20194 0.91367 0.91811 0.89281 0.93455 1.42391 1.03350 1.87519 1.02746 1.19167 0.92816 1.42326 0.82639 0.91339 1.24712 0.95344 1.02970 0.97752 1.69647 0.97104 1.57100 1.34188 0.86312 0.76484 0.77791 0.85843 1.21328 1.21761 1.21365 1.21734 0.96614 0.97822 0.96765 0.91100 1.21657 1.02783 0.94297 1.00629 1.21753 0.96351 0.80427 1.01727 0.89465 0.89703 0.89534 0.89747 0.88156 0.89118 0.90862 0.91622 0.92053 0.90643 0.78188 0.93480 0.93776 0.90732 0.93073 0.91454 0.89184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.28 36.01 0.37 -0.49 16 2 C 0.14 1.73 7.16 -82.01 -0.59 1.15 16 3 N -0.27 -3.34 12.49 33.91 0.42 -2.92 16 4 N -0.38 -4.04 3.98 -67.95 -0.27 -4.31 16 5 C 0.09 0.54 11.43 59.85 0.68 1.23 16 6 C 0.29 3.57 8.70 -16.32 -0.14 3.43 16 7 F -0.09 -1.06 17.31 2.25 0.04 -1.02 16 8 C -0.28 -3.87 3.86 -104.97 -0.41 -4.28 16 9 C 0.60 9.39 7.24 -12.64 -0.09 9.30 16 10 O -0.54 -10.00 16.52 5.25 0.09 -9.91 16 11 N -0.59 -8.72 2.97 -174.15 -0.52 -9.24 16 12 C 0.11 1.52 6.34 -3.71 -0.02 1.50 16 13 C -0.15 -2.47 5.66 -26.61 -0.15 -2.62 16 14 C 0.18 3.40 2.19 -67.90 -0.15 3.25 16 15 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 16 N -0.72 -16.91 4.41 -53.39 -0.24 -17.14 16 17 C -0.24 -6.29 9.93 -15.06 -0.15 -6.44 16 18 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 20 N -0.93 -27.33 13.06 55.49 0.72 -26.61 16 21 Si 0.90 21.84 29.55 -169.99 -5.02 16.82 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 25 C -0.11 -1.76 2.46 -90.52 -0.22 -1.99 16 26 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 27 C -0.14 -2.17 9.02 37.16 0.34 -1.83 16 28 C 0.12 1.75 5.72 -3.73 -0.02 1.73 16 29 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.09 1.00 8.01 -51.93 -0.42 0.58 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.96 6.26 -51.93 -0.32 0.64 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.38 9.74 7.50 -40.82 -0.31 9.43 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 1.40 7.36 -51.93 -0.38 1.01 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.09 1.35 7.00 -51.93 -0.36 0.99 16 LS Contribution 375.15 15.07 5.65 5.65 Total: -1.00 -32.20 375.15 -6.60 -38.80 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -6.83 Total: 6.37 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -0.65 Total: 3.51 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: 0.12 Total: -60.22 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 9 Polarization: -1.06 SS G_CDS: 0.04 Total: -1.02 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.20 -6.60 -38.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036282266.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.087 kcal (2) G-P(sol) polarization free energy of solvation -32.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds