Wall clock time and date at job start Tue Mar 31 2020 14:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30368 * 125.97000 * 2 1 4 4 N 1.39923 * 109.02161 * 180.28696 * 3 2 1 5 5 C 1.46499 * 125.74258 * 179.73143 * 4 3 2 6 6 C 1.34411 * 108.51139 * 359.70876 * 4 3 2 7 7 F 1.35098 * 126.34500 * 179.97438 * 6 4 3 8 8 C 1.38504 * 107.31750 * 0.02562 * 6 4 3 9 9 C 1.47161 * 126.46472 * 179.97438 * 8 6 4 10 10 O 1.21635 * 119.99690 * 90.02196 * 9 8 6 11 11 N 1.34773 * 120.00434 * 270.02850 * 9 8 6 12 12 C 1.46926 * 120.62904 * 359.97438 * 11 9 8 13 13 C 1.53192 * 108.77820 * 233.58715 * 12 11 9 14 14 C 1.53033 * 109.31270 * 305.36633 * 13 12 11 15 15 H 1.09002 * 109.44693 * 301.34841 * 14 13 12 16 16 N 1.46494 * 109.46160 * 181.38322 * 14 13 12 17 17 C 1.36940 * 120.00155 * 84.92863 * 16 14 13 18 18 H 1.08006 * 120.00048 * 0.02562 * 17 16 14 19 19 C 1.38807 * 120.00422 * 179.97438 * 17 16 14 20 20 N 1.31626 * 119.99769 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00528 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46853 * 59.99884 * 21 19 17 23 23 H 1.48498 * 109.47526 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47210 * 300.00390 * 21 19 17 25 25 C 1.53041 * 109.53898 * 61.36218 * 14 13 12 26 26 H 1.08994 * 109.52286 * 58.60459 * 25 14 13 27 27 C 1.53004 * 109.49660 * 178.68381 * 25 14 13 28 28 C 1.46927 * 120.63516 * 179.97438 * 11 9 8 29 29 H 1.09003 * 109.47201 * 270.19266 * 1 2 3 30 30 H 1.09001 * 109.47286 * 30.18528 * 1 2 3 31 31 H 1.09000 * 109.47489 * 150.19070 * 1 2 3 32 32 H 1.08996 * 109.47098 * 269.97158 * 5 4 3 33 33 H 1.08995 * 109.46893 * 29.97391 * 5 4 3 34 34 H 1.08998 * 109.46647 * 149.97150 * 5 4 3 35 35 H 1.09006 * 109.58406 * 353.37631 * 12 11 9 36 36 H 1.09002 * 109.59019 * 113.79619 * 12 11 9 37 37 H 1.09000 * 109.49511 * 65.31256 * 13 12 11 38 38 H 1.08995 * 109.49883 * 185.40976 * 13 12 11 39 39 H 0.97004 * 120.00246 * 264.93183 * 16 14 13 40 40 H 0.97001 * 120.00176 * 179.97438 * 20 19 17 41 41 H 1.09004 * 109.46885 * 179.83832 * 27 25 14 42 42 H 1.08992 * 109.47045 * 299.83708 * 27 25 14 43 43 H 1.09000 * 109.47338 * 59.84089 * 27 25 14 44 44 H 1.08997 * 109.58859 * 246.20187 * 28 11 9 45 45 H 1.09001 * 109.58530 * 6.48424 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0551 0.0000 4 7 3.6112 0.6472 -0.0066 5 6 4.7764 1.5352 -0.0143 6 6 3.6479 -0.6964 -0.0042 7 9 4.7575 -1.4671 -0.0094 8 6 2.3374 -1.1446 0.0033 9 6 1.8928 -2.5474 0.0077 10 8 1.7143 -3.1255 1.0629 11 7 1.6837 -3.1918 -1.1574 12 6 1.8947 -2.5069 -2.4400 13 6 0.6243 -2.6408 -3.2854 14 6 0.2570 -4.1207 -3.4162 15 1 1.0843 -4.6606 -3.8769 16 7 -0.9389 -4.2548 -4.2516 17 6 -0.8202 -4.2975 -5.6152 18 1 0.1550 -4.2327 -6.0747 19 6 -1.9533 -4.4251 -6.4069 20 7 -3.1418 -4.5046 -5.8469 21 14 -1.7914 -4.4841 -8.2669 22 1 -0.9506 -5.6454 -8.6540 23 1 -3.1383 -4.6222 -8.8769 24 1 -1.1566 -3.2310 -8.7485 25 6 -0.0224 -4.7032 -2.0288 26 1 -0.8332 -4.1481 -1.5572 27 6 -0.4213 -6.1741 -2.1635 28 6 1.2403 -4.5925 -1.1692 29 1 -0.3634 0.0035 1.0277 30 1 -0.3634 0.8883 -0.5167 31 1 -0.3634 -0.8917 -0.5109 32 1 5.0601 1.7534 -1.0438 33 1 4.5285 2.4642 0.4990 34 1 5.6074 1.0485 0.4962 35 1 2.1050 -1.4524 -2.2608 36 1 2.7331 -2.9646 -2.9652 37 1 -0.1925 -2.1046 -2.8022 38 1 0.8003 -2.2208 -4.2757 39 1 -1.8148 -4.3133 -3.8390 40 1 -3.9337 -4.5934 -6.4001 41 1 -0.6174 -6.5894 -1.1749 42 1 -1.3201 -6.2523 -2.7751 43 1 0.3893 -6.7287 -2.6362 44 1 2.0251 -5.2207 -1.5905 45 1 1.0212 -4.9150 -0.1513 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036282266.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:27 Heat of formation + Delta-G solvation = -7.919952 kcal Electronic energy + Delta-G solvation = -28577.951115 eV Core-core repulsion = 24546.326965 eV Total energy + Delta-G solvation = -4031.624150 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.47003 -42.58761 -40.97434 -38.92965 -36.15698 -35.27613 -34.38173 -33.04686 -31.63565 -30.95705 -30.50041 -27.98204 -27.04817 -26.37251 -24.58836 -23.19555 -23.04107 -21.82807 -21.21459 -20.35084 -19.04273 -18.80312 -18.22293 -17.66943 -17.20606 -17.16987 -16.72704 -15.92729 -15.76140 -15.68892 -15.43378 -15.34042 -14.92331 -14.69951 -14.54388 -14.38790 -14.19882 -13.85721 -13.70881 -13.62383 -13.31805 -13.15609 -13.06557 -12.90676 -12.79767 -12.72840 -12.44853 -12.17710 -12.04994 -12.03241 -11.80152 -11.63748 -11.15482 -11.11004 -10.82754 -10.43705 -9.85128 -9.71667 -8.92613 -7.87676 -5.14805 0.20480 0.86346 1.09100 1.35361 1.50894 1.52482 1.58376 2.01522 2.60700 2.70595 3.18724 3.45308 3.62993 3.72603 3.81913 3.87881 4.03137 4.08867 4.10440 4.22420 4.31100 4.33468 4.38713 4.52715 4.59104 4.66922 4.68820 4.71792 4.80491 4.80719 4.85085 4.85887 4.99239 5.05439 5.20557 5.28372 5.33718 5.44010 5.52528 5.58883 5.61424 5.65771 6.21836 6.30531 6.34093 7.02178 7.40751 8.17160 8.40457 9.35581 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.016513 B = 0.003363 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.215921 B = 8323.912407 C = 8930.453680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.130 3.870 3 N -0.279 5.279 4 N -0.366 5.366 5 C 0.080 3.920 6 C 0.291 3.709 7 F -0.086 7.086 8 C -0.305 4.305 9 C 0.601 3.399 10 O -0.572 6.572 11 N -0.593 5.593 12 C 0.122 3.878 13 C -0.138 4.138 14 C 0.180 3.820 15 H 0.047 0.953 16 N -0.730 5.730 17 C -0.231 4.231 18 H 0.076 0.924 19 C -0.074 4.074 20 N -0.970 5.970 21 Si 0.965 3.035 22 H -0.280 1.280 23 H -0.301 1.301 24 H -0.279 1.279 25 C -0.099 4.099 26 H 0.058 0.942 27 C -0.129 4.129 28 C 0.126 3.874 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.051 0.949 38 H 0.065 0.935 39 H 0.372 0.628 40 H 0.248 0.752 41 H 0.065 0.935 42 H 0.041 0.959 43 H 0.057 0.943 44 H 0.085 0.915 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.777 10.672 12.596 23.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.036 4.036 3 N -0.102 5.102 4 N -0.151 5.151 5 C -0.058 4.058 6 C 0.143 3.857 7 F -0.065 7.065 8 C -0.321 4.321 9 C 0.388 3.612 10 O -0.451 6.451 11 N -0.324 5.324 12 C -0.001 4.001 13 C -0.179 4.179 14 C 0.072 3.928 15 H 0.065 0.935 16 N -0.369 5.369 17 C -0.363 4.363 18 H 0.094 0.906 19 C -0.266 4.266 20 N -0.621 5.621 21 Si 0.795 3.205 22 H -0.206 1.206 23 H -0.227 1.227 24 H -0.205 1.205 25 C -0.119 4.119 26 H 0.077 0.923 27 C -0.187 4.187 28 C 0.003 3.997 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.092 0.908 32 H 0.120 0.880 33 H 0.133 0.867 34 H 0.128 0.872 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.204 0.796 40 H 0.057 0.943 41 H 0.084 0.916 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.103 0.897 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 17.003 11.688 12.949 24.359 hybrid contribution -0.306 -1.103 -1.062 1.562 sum 16.697 10.585 11.887 23.067 Atomic orbital electron populations 1.20401 0.84208 1.04596 1.04624 1.22423 0.97964 0.87561 0.95680 1.77300 0.84821 1.21016 1.27094 1.49042 1.07866 1.02414 1.55750 1.22524 0.82483 0.94685 1.06095 1.17693 0.82926 0.82603 1.02526 1.91662 1.49402 1.71655 1.93787 1.19582 0.91407 0.95024 1.26126 1.17282 0.76311 0.84515 0.83091 1.90750 1.53756 1.68607 1.32019 1.48148 1.65103 1.13165 1.05940 1.21745 0.98003 0.97799 0.82546 1.22455 0.96640 0.99564 0.99267 1.20403 0.89447 0.93219 0.89753 0.93480 1.42552 1.04321 1.87565 1.02412 1.19545 0.92870 1.39827 0.84022 0.90602 1.25441 0.95247 1.04225 1.01722 1.69807 0.97584 1.59446 1.35237 0.85327 0.75882 0.78058 0.81189 1.20614 1.22728 1.20547 1.21595 0.97204 0.97603 0.95476 0.92323 1.21573 1.01449 0.94383 1.01337 1.21689 0.95861 0.80867 1.01265 0.88576 0.88365 0.90751 0.87977 0.86707 0.87197 0.89668 0.89912 0.93000 0.91650 0.79635 0.94293 0.91591 0.93956 0.92381 0.89668 0.89328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.65 10.28 71.24 0.73 -0.92 16 2 C 0.13 3.15 7.16 43.56 0.31 3.46 16 3 N -0.28 -6.37 12.49 -46.64 -0.58 -6.95 16 4 N -0.37 -6.97 3.98 -368.88 -1.47 -8.44 16 5 C 0.08 0.68 11.43 127.77 1.46 2.14 16 6 C 0.29 6.63 8.70 84.36 0.73 7.37 16 7 F -0.09 -1.84 17.31 44.97 0.78 -1.06 16 8 C -0.31 -8.08 3.86 -20.09 -0.08 -8.15 16 9 C 0.60 18.30 7.24 86.59 0.63 18.93 16 10 O -0.57 -21.00 16.52 -4.14 -0.07 -21.07 16 11 N -0.59 -16.57 2.97 -823.15 -2.45 -19.01 16 12 C 0.12 3.14 6.34 86.36 0.55 3.69 16 13 C -0.14 -4.45 5.66 30.67 0.17 -4.28 16 14 C 0.18 6.57 2.19 45.02 0.10 6.67 16 15 H 0.05 1.74 8.08 -2.39 -0.02 1.72 16 16 N -0.73 -34.63 4.41 -322.83 -1.42 -36.06 16 17 C -0.23 -12.17 9.93 84.03 0.83 -11.34 16 18 H 0.08 3.82 7.83 -2.91 -0.02 3.80 16 19 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 20 N -0.97 -58.16 13.06 21.65 0.28 -57.88 16 21 Si 0.97 45.12 29.55 68.60 2.03 47.14 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 23 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 25 C -0.10 -3.14 2.46 -10.73 -0.03 -3.16 16 26 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 27 C -0.13 -4.08 9.02 71.98 0.65 -3.43 16 28 C 0.13 3.48 5.72 86.35 0.49 3.98 16 29 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.07 1.71 8.01 -2.39 -0.02 1.69 16 32 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.09 2.06 6.26 -2.38 -0.01 2.05 16 36 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.37 19.40 7.50 -92.70 -0.70 18.70 16 40 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 41 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 42 H 0.04 1.61 7.36 -2.39 -0.02 1.59 16 43 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.09 2.56 7.00 -2.39 -0.02 2.54 16 Total: -1.00 -69.42 375.15 4.43 -64.99 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: 0.31 Total: 27.07 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 7.02 Total: 11.28 kcal Atomic # 7 Polarization: -122.71 SS G_CDS: -5.64 Total: -128.35 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.07 Total: -21.07 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.78 Total: -1.06 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -69.42 4.43 -64.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036282266.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.069 kcal (2) G-P(sol) polarization free energy of solvation -69.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds