Wall clock time and date at job start Tue Mar 31 2020 14:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99811 * 2 1 4 4 H 1.48501 * 109.47202 * 239.99880 * 3 2 1 5 5 H 1.48496 * 109.47555 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46814 * 120.00733 * 3 2 1 7 7 C 1.38811 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99604 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00027 * 359.97438 * 7 2 1 10 10 C 1.47212 * 125.88991 * 359.97438 * 9 7 2 11 11 C 1.54727 * 107.24213 * 183.73327 * 10 9 7 12 12 C 1.54191 * 102.06328 * 21.51807 * 11 10 9 13 13 H 1.09005 * 108.73823 * 78.17608 * 12 11 10 14 14 C 1.50945 * 112.77328 * 199.85778 * 12 11 10 15 15 N 1.46704 * 111.14031 * 70.09335 * 14 12 11 16 16 C 1.34774 * 121.35622 * 232.17351 * 15 14 12 17 17 O 1.21276 * 120.00408 * 0.02562 * 16 15 14 18 18 C 1.50698 * 119.99771 * 180.02562 * 16 15 14 19 19 C 1.53005 * 109.47098 * 179.97438 * 18 16 15 20 20 O 1.42970 * 109.47344 * 295.00080 * 19 18 16 21 21 C 1.43084 * 113.77204 * 181.20285 * 20 19 18 22 22 C 1.53261 * 108.93975 * 57.97402 * 21 20 19 23 23 C 1.53259 * 108.84552 * 305.46999 * 22 21 20 24 24 O 1.42967 * 109.47348 * 175.00304 * 19 18 16 25 25 C 1.47215 * 117.28488 * 52.19342 * 15 14 12 26 26 C 1.52759 * 107.80843 * 301.88529 * 25 15 14 27 27 C 1.48634 * 125.88948 * 179.97438 * 9 7 2 28 28 H 1.08997 * 112.00431 * 31.87204 * 27 9 7 29 29 H 0.97000 * 119.99501 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.88907 * 303.14642 * 10 9 7 31 31 H 1.09008 * 109.88873 * 64.16907 * 10 9 7 32 32 H 1.08997 * 110.90913 * 263.32383 * 11 10 9 33 33 H 1.08995 * 110.90825 * 139.71065 * 11 10 9 34 34 H 1.08992 * 109.14360 * 309.66153 * 14 12 11 35 35 H 1.09001 * 109.14118 * 190.52098 * 14 12 11 36 36 H 1.08998 * 109.47749 * 299.99642 * 18 16 15 37 37 H 1.09001 * 109.47450 * 60.00405 * 18 16 15 38 38 H 1.08999 * 109.46940 * 54.99914 * 19 18 16 39 39 H 1.08996 * 109.55989 * 298.13272 * 21 20 19 40 40 H 1.09000 * 109.64906 * 177.85747 * 21 20 19 41 41 H 1.09008 * 109.57105 * 185.66515 * 22 21 20 42 42 H 1.08997 * 109.68437 * 65.34513 * 22 21 20 43 43 H 1.09007 * 109.55821 * 294.69089 * 23 22 21 44 44 H 1.09002 * 109.64844 * 174.41897 * 23 22 21 45 45 H 1.09002 * 109.80240 * 61.48015 * 25 15 14 46 46 H 1.08997 * 109.80112 * 182.29315 * 25 15 14 47 47 H 1.08995 * 109.20267 * 178.26478 * 26 25 15 48 48 H 1.09003 * 109.20361 * 297.56676 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1387 -2.5391 0.0005 11 6 -0.4435 -4.0530 0.0963 12 6 0.8650 -4.6080 0.6941 13 1 0.8742 -4.4055 1.7651 14 6 1.0323 -6.0896 0.4593 15 7 1.2929 -6.3750 -0.9559 16 6 0.5595 -7.2784 -1.6359 17 8 -0.3376 -7.8744 -1.0784 18 6 0.8541 -7.5480 -3.0889 19 6 -0.1150 -8.6073 -3.6179 20 8 0.1222 -9.8475 -2.9474 21 6 -0.7203 -10.9146 -3.3934 22 6 -0.5191 -11.1108 -4.9000 23 6 -0.7581 -9.7736 -5.6096 24 8 0.0868 -8.7789 -5.0228 25 6 2.3885 -5.6346 -1.6030 26 6 2.0846 -4.1431 -1.4739 27 6 1.9328 -3.7447 -0.0016 28 1 2.8834 -3.7671 0.5312 29 1 -0.4849 0.8401 0.0004 30 1 -0.5644 -2.0201 0.8592 31 1 -0.5542 -2.1324 -0.9216 32 1 -0.6302 -4.4754 -0.8910 33 1 -1.2855 -4.2388 0.7631 34 1 0.1224 -6.6052 0.7663 35 1 1.8676 -6.4542 1.0572 36 1 0.7346 -6.6279 -3.6608 37 1 1.8775 -7.9091 -3.1913 38 1 -1.1402 -8.2855 -3.4347 39 1 -1.7623 -10.6647 -3.1938 40 1 -0.4581 -11.8328 -2.8677 41 1 -1.2277 -11.8521 -5.2695 42 1 0.4985 -11.4501 -5.0934 43 1 -1.8016 -9.4804 -5.4939 44 1 -0.5224 -9.8736 -6.6691 45 1 3.3320 -5.8634 -1.1075 46 1 2.4484 -5.9094 -2.6561 47 1 2.8987 -3.5715 -1.9195 48 1 1.1584 -3.9188 -2.0031 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036698253.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:02 Heat of formation + Delta-G solvation = -96.486693 kcal Electronic energy + Delta-G solvation = -29074.653563 eV Core-core repulsion = 25130.356425 eV Total energy + Delta-G solvation = -3944.297138 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.51264 -39.79712 -38.12227 -35.84004 -35.18574 -33.48559 -32.59931 -31.39654 -30.54854 -29.18296 -28.14571 -26.21976 -25.18619 -24.20081 -22.98510 -22.54749 -21.40418 -20.01166 -19.73259 -18.16431 -17.70800 -17.03577 -16.80136 -16.62638 -16.10259 -15.60452 -15.23210 -14.97797 -14.80611 -14.73832 -14.41182 -13.79451 -13.52643 -13.45141 -13.26388 -12.99644 -12.87324 -12.71739 -12.18446 -11.90077 -11.80792 -11.68665 -11.54201 -11.36440 -11.31565 -11.23079 -11.05003 -10.81137 -10.70528 -10.24526 -10.11583 -9.89926 -9.85243 -9.79222 -9.72542 -9.57818 -9.47394 -8.61170 -8.38116 -6.83827 -5.69387 -3.03087 2.76732 2.89386 3.40254 3.44649 3.46099 3.46320 3.56976 4.41939 4.43298 4.48591 4.58199 4.68447 4.79137 4.92852 5.03679 5.10487 5.11555 5.15758 5.29876 5.38275 5.43576 5.44629 5.49472 5.50276 5.55573 5.63766 5.67766 5.73017 5.85138 5.94284 6.04212 6.08318 6.29541 6.31409 6.41788 6.55582 6.61285 6.63399 6.79805 6.92220 6.97863 7.08932 7.56809 7.59493 7.65824 7.84923 8.25918 8.31573 9.22322 9.82385 10.50522 11.41751 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.026044 B = 0.002754 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.845007 B =10162.913601 C =10462.085916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.226 4.226 8 H 0.076 0.924 9 N -0.602 5.602 10 C 0.179 3.821 11 C -0.135 4.135 12 C -0.114 4.114 13 H 0.080 0.920 14 C 0.129 3.871 15 N -0.603 5.603 16 C 0.526 3.474 17 O -0.539 6.539 18 C -0.127 4.127 19 C 0.265 3.735 20 O -0.377 6.377 21 C 0.058 3.942 22 C -0.194 4.194 23 C 0.059 3.941 24 O -0.395 6.395 25 C 0.105 3.895 26 C -0.143 4.143 27 C 0.166 3.834 28 H 0.061 0.939 29 H 0.252 0.748 30 H 0.049 0.951 31 H 0.034 0.966 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.099 0.901 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.069 0.931 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.493 -20.477 -8.408 22.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.094 0.906 9 N -0.326 5.326 10 C 0.054 3.946 11 C -0.173 4.173 12 C -0.134 4.134 13 H 0.098 0.902 14 C 0.006 3.994 15 N -0.336 5.336 16 C 0.313 3.687 17 O -0.416 6.416 18 C -0.167 4.167 19 C 0.170 3.830 20 O -0.298 6.298 21 C -0.018 4.018 22 C -0.231 4.231 23 C -0.018 4.018 24 O -0.316 6.316 25 C -0.019 4.019 26 C -0.184 4.184 27 C 0.058 3.942 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.135 0.865 37 H 0.126 0.874 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.116 0.884 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.073 0.927 44 H 0.117 0.883 45 H 0.088 0.912 46 H 0.096 0.904 47 H 0.087 0.913 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.206 -20.417 -8.047 21.947 hybrid contribution 0.101 0.895 -0.219 0.927 sum 0.307 -19.522 -8.266 21.203 Atomic orbital electron populations 1.69963 1.04866 1.25051 1.57032 1.24794 0.95677 0.97588 1.02437 0.86226 0.78437 0.83398 0.77833 1.21249 1.21697 1.21243 1.18992 0.90335 0.82428 1.43724 0.90570 1.44946 1.01458 0.99408 1.86795 1.21198 0.84236 0.88426 1.00734 1.22752 0.95752 0.99399 0.99436 1.21888 0.97834 0.92790 1.00883 0.90159 1.20943 1.02014 0.95978 0.80485 1.48029 1.33872 1.39771 1.11954 1.19993 0.81660 0.79072 0.87964 1.90692 1.31314 1.49422 1.70189 1.21480 1.01707 0.99193 0.94298 1.22894 0.98007 0.84915 0.77221 1.88172 1.60875 1.19240 1.61471 1.22593 0.94637 0.91184 0.93427 1.22813 1.04043 0.98872 0.97414 1.22632 0.94138 0.86973 0.98020 1.88064 1.62798 1.58038 1.22699 1.21891 0.89236 0.93198 0.97536 1.22537 1.02625 0.92470 1.00764 1.21195 0.94664 0.86093 0.92233 0.92136 0.93776 0.93229 0.94744 0.92821 0.92468 0.89510 0.92060 0.86550 0.87365 0.91711 0.92779 0.88441 0.89805 0.90040 0.92742 0.88262 0.91219 0.90395 0.91252 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.98 10.35 55.49 0.57 -26.41 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.23 -6.11 10.31 -15.06 -0.16 -6.27 16 8 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.60 -14.69 2.88 -161.71 -0.47 -15.16 16 10 C 0.18 4.32 5.09 -2.74 -0.01 4.30 16 11 C -0.14 -2.60 5.89 -25.20 -0.15 -2.75 16 12 C -0.11 -1.97 2.89 -90.54 -0.26 -2.23 16 13 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 14 C 0.13 1.92 5.84 -4.96 -0.03 1.89 16 15 N -0.60 -8.60 2.80 -174.33 -0.49 -9.09 16 16 C 0.53 7.83 7.60 -10.99 -0.08 7.75 16 17 O -0.54 -9.69 14.89 -8.83 -0.13 -9.82 16 18 C -0.13 -1.52 4.15 -27.88 -0.12 -1.64 16 19 C 0.26 3.34 2.80 37.16 0.10 3.44 16 20 O -0.38 -5.04 9.77 -64.75 -0.63 -5.68 16 21 C 0.06 0.56 6.96 37.29 0.26 0.82 16 22 C -0.19 -1.45 6.35 -26.46 -0.17 -1.62 16 23 C 0.06 0.49 6.96 37.29 0.26 0.75 16 24 O -0.40 -4.60 10.54 -59.03 -0.62 -5.22 16 25 C 0.10 1.32 6.36 -3.78 -0.02 1.30 16 26 C -0.14 -2.37 5.24 -26.71 -0.14 -2.51 16 27 C 0.17 3.16 3.62 -66.12 -0.24 2.92 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 30 H 0.05 1.34 7.24 -51.93 -0.38 0.97 16 31 H 0.03 0.93 7.66 -51.92 -0.40 0.53 16 32 H 0.05 1.03 7.42 -51.93 -0.39 0.65 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.09 1.38 7.04 -51.93 -0.37 1.01 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.12 1.24 7.81 -51.93 -0.41 0.84 16 37 H 0.11 1.16 7.90 -51.93 -0.41 0.75 16 38 H 0.07 0.86 7.95 -51.93 -0.41 0.44 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.08 0.81 6.04 -51.93 -0.31 0.50 16 47 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 48 H 0.07 1.26 6.93 -51.93 -0.36 0.90 16 LS Contribution 367.47 15.07 5.54 5.54 Total: -1.00 -32.74 367.47 -10.15 -42.89 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -8.05 Total: 0.25 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -0.85 Total: 5.81 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: -0.38 Total: -50.66 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -1.39 Total: -20.72 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.74 -10.15 -42.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036698253.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.595 kcal (2) G-P(sol) polarization free energy of solvation -32.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds