Wall clock time and date at job start Tue Mar 31 2020 14:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99811 * 2 1 4 4 H 1.48501 * 109.47202 * 239.99880 * 3 2 1 5 5 H 1.48496 * 109.47555 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46814 * 120.00733 * 3 2 1 7 7 C 1.38811 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99604 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00027 * 359.97438 * 7 2 1 10 10 C 1.47212 * 125.88991 * 359.97438 * 9 7 2 11 11 C 1.54727 * 107.24213 * 183.73327 * 10 9 7 12 12 C 1.54191 * 102.06328 * 21.51807 * 11 10 9 13 13 H 1.09005 * 108.73823 * 78.17608 * 12 11 10 14 14 C 1.50945 * 112.77328 * 199.85778 * 12 11 10 15 15 N 1.46704 * 111.14031 * 70.09335 * 14 12 11 16 16 C 1.34774 * 121.35622 * 232.17351 * 15 14 12 17 17 O 1.21276 * 120.00408 * 0.02562 * 16 15 14 18 18 C 1.50698 * 119.99771 * 180.02562 * 16 15 14 19 19 C 1.53005 * 109.47098 * 179.97438 * 18 16 15 20 20 O 1.42970 * 109.47344 * 295.00080 * 19 18 16 21 21 C 1.43084 * 113.77204 * 181.20285 * 20 19 18 22 22 C 1.53261 * 108.93975 * 57.97402 * 21 20 19 23 23 C 1.53259 * 108.84552 * 305.46999 * 22 21 20 24 24 O 1.42967 * 109.47348 * 175.00304 * 19 18 16 25 25 C 1.47215 * 117.28488 * 52.19342 * 15 14 12 26 26 C 1.52759 * 107.80843 * 301.88529 * 25 15 14 27 27 C 1.48634 * 125.88948 * 179.97438 * 9 7 2 28 28 H 1.08997 * 112.00431 * 31.87204 * 27 9 7 29 29 H 0.97000 * 119.99501 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.88907 * 303.14642 * 10 9 7 31 31 H 1.09008 * 109.88873 * 64.16907 * 10 9 7 32 32 H 1.08997 * 110.90913 * 263.32383 * 11 10 9 33 33 H 1.08995 * 110.90825 * 139.71065 * 11 10 9 34 34 H 1.08992 * 109.14360 * 309.66153 * 14 12 11 35 35 H 1.09001 * 109.14118 * 190.52098 * 14 12 11 36 36 H 1.08998 * 109.47749 * 299.99642 * 18 16 15 37 37 H 1.09001 * 109.47450 * 60.00405 * 18 16 15 38 38 H 1.08999 * 109.46940 * 54.99914 * 19 18 16 39 39 H 1.08996 * 109.55989 * 298.13272 * 21 20 19 40 40 H 1.09000 * 109.64906 * 177.85747 * 21 20 19 41 41 H 1.09008 * 109.57105 * 185.66515 * 22 21 20 42 42 H 1.08997 * 109.68437 * 65.34513 * 22 21 20 43 43 H 1.09007 * 109.55821 * 294.69089 * 23 22 21 44 44 H 1.09002 * 109.64844 * 174.41897 * 23 22 21 45 45 H 1.09002 * 109.80240 * 61.48015 * 25 15 14 46 46 H 1.08997 * 109.80112 * 182.29315 * 25 15 14 47 47 H 1.08995 * 109.20267 * 178.26478 * 26 25 15 48 48 H 1.09003 * 109.20361 * 297.56676 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1387 -2.5391 0.0005 11 6 -0.4435 -4.0530 0.0963 12 6 0.8650 -4.6080 0.6941 13 1 0.8742 -4.4055 1.7651 14 6 1.0323 -6.0896 0.4593 15 7 1.2929 -6.3750 -0.9559 16 6 0.5595 -7.2784 -1.6359 17 8 -0.3376 -7.8744 -1.0784 18 6 0.8541 -7.5480 -3.0889 19 6 -0.1150 -8.6073 -3.6179 20 8 0.1222 -9.8475 -2.9474 21 6 -0.7203 -10.9146 -3.3934 22 6 -0.5191 -11.1108 -4.9000 23 6 -0.7581 -9.7736 -5.6096 24 8 0.0868 -8.7789 -5.0228 25 6 2.3885 -5.6346 -1.6030 26 6 2.0846 -4.1431 -1.4739 27 6 1.9328 -3.7447 -0.0016 28 1 2.8834 -3.7671 0.5312 29 1 -0.4849 0.8401 0.0004 30 1 -0.5644 -2.0201 0.8592 31 1 -0.5542 -2.1324 -0.9216 32 1 -0.6302 -4.4754 -0.8910 33 1 -1.2855 -4.2388 0.7631 34 1 0.1224 -6.6052 0.7663 35 1 1.8676 -6.4542 1.0572 36 1 0.7346 -6.6279 -3.6608 37 1 1.8775 -7.9091 -3.1913 38 1 -1.1402 -8.2855 -3.4347 39 1 -1.7623 -10.6647 -3.1938 40 1 -0.4581 -11.8328 -2.8677 41 1 -1.2277 -11.8521 -5.2695 42 1 0.4985 -11.4501 -5.0934 43 1 -1.8016 -9.4804 -5.4939 44 1 -0.5224 -9.8736 -6.6691 45 1 3.3320 -5.8634 -1.1075 46 1 2.4484 -5.9094 -2.6561 47 1 2.8987 -3.5715 -1.9195 48 1 1.1584 -3.9188 -2.0031 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036698253.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:00 Heat of formation + Delta-G solvation = -116.710645 kcal Electronic energy + Delta-G solvation = -29075.530540 eV Core-core repulsion = 25130.356425 eV Total energy + Delta-G solvation = -3945.174114 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.62139 -40.81516 -39.51631 -36.73852 -36.58204 -34.56514 -34.11257 -32.82385 -31.69136 -30.74553 -29.70997 -26.92499 -26.75200 -25.64910 -24.23340 -23.82401 -22.12594 -21.88043 -20.97080 -19.46258 -18.76139 -18.67432 -17.99233 -17.47502 -17.11965 -16.73717 -16.56749 -16.40226 -15.92190 -15.72677 -15.70642 -15.47138 -14.73790 -14.45867 -14.28823 -14.25827 -14.18693 -13.84998 -13.74675 -13.30992 -13.14721 -13.01593 -12.88481 -12.65716 -12.62143 -12.41115 -12.37466 -12.07803 -12.06487 -12.04260 -11.64485 -11.49044 -11.28928 -11.14452 -10.99254 -10.78236 -10.66939 -10.66701 -9.59545 -8.85520 -7.80253 -5.14970 1.47005 1.49950 1.55958 1.64265 1.87949 2.51783 2.64878 2.67918 3.37637 3.49560 3.63694 3.76812 3.79964 3.81420 3.85058 3.96437 4.02057 4.12244 4.21843 4.24048 4.33976 4.40507 4.45199 4.49048 4.50938 4.57942 4.65784 4.70919 4.81681 4.83218 4.84901 4.85372 4.91782 4.95161 5.03636 5.12089 5.14745 5.37675 5.47495 5.57903 5.64496 5.69483 5.80103 5.84242 6.15790 6.21710 6.46955 7.12573 7.18293 7.80857 8.48329 9.30134 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.026044 B = 0.002754 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.845007 B =10162.913601 C =10462.085916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.073 4.073 3 Si 0.976 3.024 4 H -0.276 1.276 5 H -0.301 1.301 6 H -0.277 1.277 7 C -0.229 4.229 8 H 0.087 0.913 9 N -0.621 5.621 10 C 0.191 3.809 11 C -0.120 4.120 12 C -0.100 4.100 13 H 0.078 0.922 14 C 0.135 3.865 15 N -0.604 5.604 16 C 0.523 3.477 17 O -0.574 6.574 18 C -0.122 4.122 19 C 0.266 3.734 20 O -0.402 6.402 21 C 0.046 3.954 22 C -0.184 4.184 23 C 0.047 3.953 24 O -0.406 6.406 25 C 0.113 3.887 26 C -0.133 4.133 27 C 0.159 3.841 28 H 0.072 0.928 29 H 0.243 0.757 30 H 0.010 0.990 31 H -0.006 1.006 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.079 0.921 43 H 0.059 0.941 44 H 0.120 0.880 45 H 0.097 0.903 46 H 0.108 0.892 47 H 0.068 0.932 48 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.557 -22.577 -9.421 24.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.265 4.265 3 Si 0.805 3.195 4 H -0.202 1.202 5 H -0.227 1.227 6 H -0.203 1.203 7 C -0.358 4.358 8 H 0.105 0.895 9 N -0.346 5.346 10 C 0.066 3.934 11 C -0.159 4.159 12 C -0.120 4.120 13 H 0.096 0.904 14 C 0.012 3.988 15 N -0.337 5.337 16 C 0.312 3.688 17 O -0.454 6.454 18 C -0.162 4.162 19 C 0.170 3.830 20 O -0.323 6.323 21 C -0.030 4.030 22 C -0.222 4.222 23 C -0.029 4.029 24 O -0.328 6.328 25 C -0.009 4.009 26 C -0.173 4.173 27 C 0.054 3.946 28 H 0.090 0.910 29 H 0.052 0.948 30 H 0.029 0.971 31 H 0.012 0.988 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.098 0.902 43 H 0.077 0.923 44 H 0.138 0.862 45 H 0.115 0.885 46 H 0.126 0.874 47 H 0.087 0.913 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.316 -22.560 -9.076 24.427 hybrid contribution -0.567 1.493 0.086 1.599 sum 1.748 -21.067 -8.989 22.971 Atomic orbital electron populations 1.70203 1.06427 1.24987 1.59005 1.25637 0.96479 1.01028 1.03360 0.85182 0.77035 0.79056 0.78255 1.20204 1.22746 1.20310 1.19438 0.91057 0.83542 1.41788 0.89487 1.45229 1.01698 1.01026 1.86621 1.20852 0.84443 0.91133 0.96966 1.22568 0.97492 0.95801 1.00020 1.21797 0.95512 0.94343 1.00333 0.90372 1.20832 1.02870 0.93519 0.81567 1.48112 1.34154 1.39688 1.11704 1.20477 0.80852 0.78508 0.88929 1.90677 1.32774 1.50819 1.71114 1.21492 1.02632 0.99826 0.92221 1.22767 0.97322 0.85012 0.77879 1.88128 1.61771 1.20060 1.62329 1.22852 0.94191 0.90725 0.95197 1.22758 1.04727 0.99038 0.95665 1.22944 0.94123 0.86759 0.99057 1.88033 1.63578 1.59156 1.22008 1.21965 0.89484 0.89724 0.99743 1.22305 1.01329 0.95636 0.98039 1.21512 0.95202 0.83634 0.94296 0.91043 0.94782 0.97150 0.98756 0.92680 0.91572 0.90359 0.89330 0.85150 0.85416 0.93322 0.92946 0.87250 0.87111 0.90201 0.92264 0.86169 0.88531 0.87404 0.91297 0.94124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.52 10.35 21.65 0.22 -58.29 16 2 C -0.07 -4.14 5.49 84.86 0.47 -3.67 16 3 Si 0.98 45.73 29.55 68.60 2.03 47.76 16 4 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 5 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.23 -12.47 10.31 84.03 0.87 -11.60 16 8 H 0.09 4.43 7.83 -2.91 -0.02 4.41 16 9 N -0.62 -30.77 2.88 -665.52 -1.92 -32.68 16 10 C 0.19 9.68 5.09 86.83 0.44 10.12 16 11 C -0.12 -4.70 5.89 31.59 0.19 -4.51 16 12 C -0.10 -3.33 2.89 -10.74 -0.03 -3.36 16 13 H 0.08 2.66 8.14 -2.38 -0.02 2.64 16 14 C 0.14 3.71 5.84 85.67 0.50 4.21 16 15 N -0.60 -15.61 2.80 -823.84 -2.31 -17.92 16 16 C 0.52 14.59 7.60 87.66 0.67 15.26 16 17 O -0.57 -20.16 14.89 10.74 0.16 -20.00 16 18 C -0.12 -2.65 4.15 29.85 0.12 -2.53 16 19 C 0.27 6.37 2.80 71.98 0.20 6.57 16 20 O -0.40 -10.27 9.77 -120.76 -1.18 -11.45 16 21 C 0.05 0.83 6.96 72.07 0.50 1.33 16 22 C -0.18 -2.35 6.35 30.77 0.20 -2.15 16 23 C 0.05 0.69 6.96 72.07 0.50 1.19 16 24 O -0.41 -8.75 10.54 -126.22 -1.33 -10.08 16 25 C 0.11 2.44 6.36 86.16 0.55 2.99 16 26 C -0.13 -4.14 5.24 30.61 0.16 -3.98 16 27 C 0.16 5.85 3.62 44.99 0.16 6.02 16 28 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.24 14.62 8.31 -92.71 -0.77 13.85 16 30 H 0.01 0.59 7.24 -2.39 -0.02 0.57 16 31 H -0.01 -0.33 7.66 -2.38 -0.02 -0.35 16 32 H 0.05 2.13 7.42 -2.39 -0.02 2.11 16 33 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.08 2.35 7.04 -2.39 -0.02 2.33 16 35 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.13 2.44 7.81 -2.39 -0.02 2.42 16 37 H 0.13 2.28 7.90 -2.39 -0.02 2.26 16 38 H 0.05 1.29 7.95 -2.39 -0.02 1.27 16 39 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 44 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.10 1.68 8.14 -2.39 -0.02 1.67 16 46 H 0.11 1.76 6.04 -2.39 -0.01 1.74 16 47 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 48 H 0.04 1.49 6.93 -2.39 -0.02 1.47 16 Total: -1.00 -74.24 367.47 2.10 -72.14 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.94 Total: 14.64 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: 5.49 Total: 15.89 kcal Atomic # 7 Polarization: -104.90 SS G_CDS: -4.00 Total: -108.90 kcal Atomic # 8 Polarization: -39.18 SS G_CDS: -2.35 Total: -41.53 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -74.24 2.10 -72.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036698253.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.575 kcal (2) G-P(sol) polarization free energy of solvation -74.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds