Wall clock time and date at job start Tue Mar 31 2020 13:59:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31615 * 1
3 3 Si 1.86800 * 120.00162 * 2 1
4 4 H 1.48495 * 109.47431 * 179.97438 * 3 2 1
5 5 H 1.48498 * 109.46972 * 299.99409 * 3 2 1
6 6 H 1.48507 * 109.47173 * 59.99395 * 3 2 1
7 7 C 1.38813 * 119.99723 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99951 * 180.02562 * 7 2 1
9 9 N 1.36936 * 120.00402 * 0.02562 * 7 2 1
10 10 C 1.46663 * 125.34001 * 180.02562 * 9 7 2
11 11 C 1.53727 * 107.94540 * 179.45296 * 10 9 7
12 12 H 1.09000 * 113.05641 * 219.99528 * 11 10 9
13 13 C 1.53688 * 109.34502 * 93.74050 * 11 10 9
14 14 N 1.46636 * 108.01202 * 232.44709 * 13 11 10
15 15 C 1.34776 * 125.32937 * 179.17995 * 14 13 11
16 16 O 1.21287 * 120.00043 * 0.02562 * 15 14 13
17 17 C 1.50694 * 120.00020 * 179.97438 * 15 14 13
18 18 O 1.42900 * 109.47436 * 180.02562 * 17 15 14
19 19 C 1.42896 * 114.00439 * 180.02562 * 18 17 15
20 20 C 1.53178 * 109.54208 * 269.82127 * 19 18 17
21 21 C 1.53108 * 109.15797 * 183.23995 * 20 19 18
22 22 O 1.42900 * 109.48765 * 57.47451 * 21 20 19
23 23 C 1.42906 * 114.09749 * 298.88966 * 22 21 20
24 24 C 1.53091 * 109.41416 * 61.15868 * 23 22 21
25 25 C 1.46742 * 109.34326 * 359.16592 * 14 13 11
26 26 C 1.53934 * 106.71885 * 18.33846 * 25 14 13
27 27 H 1.09008 * 113.01089 * 209.16974 * 26 25 14
28 28 C 1.46774 * 125.33569 * 359.97438 * 9 7 2
29 29 H 0.97003 * 119.99806 * 0.02562 * 1 2 3
30 30 H 1.09000 * 109.77731 * 59.82371 * 10 9 7
31 31 H 1.09009 * 109.77109 * 299.06714 * 10 9 7
32 32 H 1.09002 * 109.75712 * 352.09025 * 13 11 10
33 33 H 1.09001 * 109.75852 * 112.79979 * 13 11 10
34 34 H 1.09004 * 109.47458 * 300.00704 * 17 15 14
35 35 H 1.08999 * 109.47362 * 60.00579 * 17 15 14
36 36 H 1.08994 * 109.54395 * 29.99504 * 19 18 17
37 37 H 1.09000 * 109.52597 * 303.06015 * 20 19 18
38 38 H 1.09000 * 109.52106 * 63.24577 * 20 19 18
39 39 H 1.09002 * 109.40190 * 297.49443 * 21 20 19
40 40 H 1.08998 * 109.49418 * 177.51480 * 21 20 19
41 41 H 1.08994 * 109.48026 * 301.17732 * 23 22 21
42 42 H 1.09001 * 109.49043 * 181.14423 * 23 22 21
43 43 H 1.08993 * 109.52556 * 182.48400 * 24 23 22
44 44 H 1.09008 * 109.57576 * 62.32685 * 24 23 22
45 45 H 1.09005 * 110.00507 * 259.02990 * 25 14 13
46 46 H 1.08995 * 110.01348 * 137.65823 * 25 14 13
47 47 H 1.08999 * 110.02523 * 79.22951 * 28 9 7
48 48 H 1.09003 * 110.02832 * 317.81270 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 3.7102 1.3464 0.0006
5 1 1.8916 2.3963 -1.2126
6 1 1.8913 2.3965 1.2125
7 6 2.0102 -1.2022 0.0005
8 1 3.0902 -1.2022 0.0010
9 7 1.3255 -2.3881 0.0005
10 6 1.9375 -3.7210 0.0016
11 6 0.8061 -4.7616 0.0152
12 1 1.0171 -5.6132 0.6619
13 6 0.4840 -5.1823 -1.4275
14 7 -0.9589 -5.0228 -1.6349
15 6 -1.6139 -5.2786 -2.7846
16 8 -1.0038 -5.6754 -3.7549
17 6 -3.1046 -5.0727 -2.8644
18 8 -3.5627 -5.4097 -4.1754
19 6 -4.9706 -5.2481 -4.3586
20 6 -5.6867 -6.5550 -4.0042
21 6 -7.1844 -6.3982 -4.2805
22 8 -7.3818 -6.0430 -5.6505
23 6 -6.7746 -4.8050 -6.0256
24 6 -5.2602 -4.8985 -5.8216
25 6 -1.5779 -4.5415 -0.3946
26 6 -0.4447 -3.9582 0.4686
27 1 -0.6410 -4.0349 1.5381
28 6 -0.1359 -2.5246 0.0005
29 1 -0.4850 0.8401 -0.0004
30 1 2.5592 -3.8406 0.8888
31 1 2.5449 -3.8485 -0.8945
32 1 1.0291 -4.5481 -2.1267
33 1 0.7652 -6.2244 -1.5790
34 1 -3.5993 -5.7106 -2.1319
35 1 -3.3390 -4.0291 -2.6544
36 1 -5.3327 -4.4475 -3.7138
37 1 -5.2880 -7.3658 -4.6138
38 1 -5.5312 -6.7810 -2.9492
39 1 -7.5908 -5.6155 -3.6399
40 1 -7.6933 -7.3393 -4.0719
41 1 -7.1756 -4.0015 -5.4079
42 1 -6.9880 -4.5983 -7.0744
43 1 -4.8000 -3.9410 -6.0652
44 1 -4.8517 -5.6743 -6.4693
45 1 -2.0570 -5.3691 0.1286
46 1 -2.3115 -3.7674 -0.6198
47 1 -0.5253 -2.3688 -1.0055
48 1 -0.5782 -1.8038 0.6883
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001049092587.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:59:05
Heat of formation + Delta-G solvation = -116.657368 kcal
Electronic energy + Delta-G solvation = -28339.431345 eV
Core-core repulsion = 24394.259541 eV
Total energy + Delta-G solvation = -3945.171804 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 324.188 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-41.61251 -40.62310 -39.66459 -38.19336 -36.62381 -34.21352 -33.55175 -32.11480
-31.71880 -31.55296 -29.22946 -27.32009 -26.76257 -25.22281 -24.61479 -24.24013
-21.93686 -21.46408 -20.87787 -20.52286 -18.90087 -18.51045 -17.85545 -17.44313
-17.22266 -17.03114 -16.73907 -16.39925 -16.19654 -15.77115 -15.57294 -15.42444
-14.84200 -14.69066 -14.63333 -14.29316 -13.99129 -13.75683 -13.56008 -13.45167
-13.29010 -13.22339 -13.11132 -12.79200 -12.70821 -12.45273 -12.26310 -11.98659
-11.95958 -11.87464 -11.82510 -11.60233 -11.39306 -11.26427 -10.97620 -10.72274
-10.68707 -10.58000 -9.68724 -8.87849 -7.81773 -5.21968 1.44841 1.45781
1.46287 1.55585 1.64943 2.47941 2.73248 2.96600 3.28920 3.35958
3.46502 3.66948 3.72011 3.80746 3.86314 3.94556 3.96574 4.05003
4.09353 4.19855 4.23288 4.26543 4.34232 4.39022 4.52365 4.52863
4.64405 4.66645 4.75886 4.76547 4.81854 4.82829 4.92903 4.96567
5.03434 5.06088 5.09475 5.16921 5.22744 5.40880 5.47085 5.66320
5.82023 6.05597 6.22383 6.28573 6.44905 7.04797 7.12288 7.79980
8.40286 9.22292
Molecular weight = 324.19amu
Principal moments of inertia in cm(-1)
A = 0.016298 B = 0.002734 C = 0.002499
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1717.563260 B =10239.603054 C =11201.139775
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.945 5.945
2 C -0.064 4.064
3 Si 0.976 3.024
4 H -0.270 1.270
5 H -0.296 1.296
6 H -0.287 1.287
7 C -0.241 4.241
8 H 0.077 0.923
9 N -0.626 5.626
10 C 0.136 3.864
11 C -0.091 4.091
12 H 0.137 0.863
13 C 0.122 3.878
14 N -0.608 5.608
15 C 0.519 3.481
16 O -0.581 6.581
17 C 0.056 3.944
18 O -0.387 6.387
19 C 0.079 3.921
20 C -0.174 4.174
21 C 0.062 3.938
22 O -0.403 6.403
23 C 0.067 3.933
24 C -0.155 4.155
25 C 0.111 3.889
26 C -0.111 4.111
27 H 0.125 0.875
28 C 0.178 3.822
29 H 0.246 0.754
30 H 0.037 0.963
31 H 0.015 0.985
32 H 0.031 0.969
33 H 0.078 0.922
34 H 0.116 0.884
35 H 0.095 0.905
36 H 0.084 0.916
37 H 0.062 0.938
38 H 0.092 0.908
39 H 0.070 0.930
40 H 0.111 0.889
41 H 0.070 0.930
42 H 0.111 0.889
43 H 0.080 0.920
44 H 0.063 0.937
45 H 0.112 0.888
46 H 0.080 0.920
47 H -0.020 1.020
48 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.545 -13.470 -1.257 20.607
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.594 5.594
2 C -0.257 4.257
3 Si 0.805 3.195
4 H -0.194 1.194
5 H -0.223 1.223
6 H -0.214 1.214
7 C -0.370 4.370
8 H 0.095 0.905
9 N -0.352 5.352
10 C 0.011 3.989
11 C -0.110 4.110
12 H 0.154 0.846
13 C -0.001 4.001
14 N -0.342 5.342
15 C 0.308 3.692
16 O -0.461 6.461
17 C -0.023 4.023
18 O -0.306 6.306
19 C 0.022 3.978
20 C -0.212 4.212
21 C -0.014 4.014
22 O -0.322 6.322
23 C -0.009 4.009
24 C -0.193 4.193
25 C -0.011 4.011
26 C -0.131 4.131
27 H 0.143 0.857
28 C 0.053 3.947
29 H 0.056 0.944
30 H 0.055 0.945
31 H 0.033 0.967
32 H 0.050 0.950
33 H 0.096 0.904
34 H 0.134 0.866
35 H 0.112 0.888
36 H 0.102 0.898
37 H 0.081 0.919
38 H 0.111 0.889
39 H 0.088 0.912
40 H 0.129 0.871
41 H 0.088 0.912
42 H 0.129 0.871
43 H 0.098 0.902
44 H 0.082 0.918
45 H 0.130 0.870
46 H 0.098 0.902
47 H -0.003 1.003
48 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -15.268 -13.669 -2.123 20.603
hybrid contribution 1.056 1.546 -0.113 1.876
sum -14.212 -12.123 -2.236 18.813
Atomic orbital electron populations
1.70097 1.05949 1.24919 1.58454 1.25567 0.96709 1.00734 1.02656
0.85044 0.78090 0.79658 0.76743 1.19421 1.22327 1.21362 1.19445
0.90962 0.83901 1.42666 0.90484 1.44589 1.02894 1.00947 1.86779
1.21349 0.94787 0.84697 0.98088 1.22765 0.95267 0.98274 0.94682
0.84554 1.21799 0.80908 1.00676 0.96678 1.48247 1.08927 1.65024
1.11982 1.20590 0.90432 0.77115 0.81023 1.90681 1.70353 1.48114
1.36915 1.22276 0.89920 1.02856 0.87275 1.88032 1.24176 1.88538
1.29871 1.22414 0.79877 0.97800 0.97732 1.22718 0.97055 0.97992
1.03485 1.22714 0.93854 1.02418 0.82433 1.87917 1.75425 1.40538
1.28355 1.22665 0.89514 0.86200 1.02552 1.22316 0.98397 1.03116
0.95478 1.22202 0.95694 0.99758 0.83456 1.23212 0.93829 0.95106
1.00922 0.85750 1.21227 0.83699 0.93177 0.96623 0.94387 0.94479
0.96711 0.95034 0.90354 0.86635 0.88758 0.89834 0.91888 0.88906
0.91220 0.87092 0.91223 0.87116 0.90157 0.91826 0.86977 0.90151
1.00251 0.92109
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -54.99 10.16 21.65 0.22 -54.77 16
2 C -0.06 -3.58 5.48 84.86 0.47 -3.12 16
3 Si 0.98 45.57 29.55 68.60 2.03 47.60 16
4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16
5 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16
6 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16
7 C -0.24 -13.44 10.25 84.03 0.86 -12.58 16
8 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16
9 N -0.63 -31.47 3.38 -697.64 -2.36 -33.82 16
10 C 0.14 5.37 6.62 86.59 0.57 5.94 16
11 C -0.09 -2.69 4.02 -9.49 -0.04 -2.73 16
12 H 0.14 2.93 8.14 -2.39 -0.02 2.91 16
13 C 0.12 4.00 6.22 86.59 0.54 4.54 16
14 N -0.61 -18.77 3.30 -817.69 -2.70 -21.47 16
15 C 0.52 17.49 7.91 87.66 0.69 18.18 16
16 O -0.58 -25.30 16.81 15.98 0.27 -25.03 16
17 C 0.06 1.35 5.27 71.23 0.38 1.72 16
18 O -0.39 -10.79 9.53 -129.94 -1.24 -12.03 16
19 C 0.08 1.53 2.69 30.71 0.08 1.62 16
20 C -0.17 -2.76 5.77 30.69 0.18 -2.59 16
21 C 0.06 0.81 6.84 72.02 0.49 1.30 16
22 O -0.40 -7.22 10.77 -148.98 -1.60 -8.83 16
23 C 0.07 0.99 6.84 72.01 0.49 1.48 16
24 C -0.16 -2.97 5.79 30.69 0.18 -2.79 16
25 C 0.11 2.70 5.75 86.65 0.50 3.20 16
26 C -0.11 -3.39 4.17 -9.33 -0.04 -3.43 16
27 H 0.12 3.19 8.14 -2.38 -0.02 3.17 16
28 C 0.18 8.15 4.92 86.64 0.43 8.57 16
29 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16
30 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16
31 H 0.01 0.62 7.44 -2.38 -0.02 0.60 16
32 H 0.03 1.28 7.29 -2.39 -0.02 1.27 16
33 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16
34 H 0.12 1.86 7.97 -2.38 -0.02 1.84 16
35 H 0.09 2.04 7.82 -2.39 -0.02 2.02 16
36 H 0.08 1.28 7.79 -2.39 -0.02 1.26 16
37 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16
38 H 0.09 1.13 7.97 -2.39 -0.02 1.11 16
39 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16
40 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16
41 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16
42 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16
43 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16
44 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16
45 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16
46 H 0.08 1.93 7.42 -2.39 -0.02 1.91 16
47 H -0.02 -1.08 7.71 -2.39 -0.02 -1.09 16
48 H 0.06 3.17 6.19 -2.39 -0.01 3.16 16
Total: -1.00 -78.51 374.80 1.32 -77.19
By element:
Atomic # 1 Polarization: 10.91 SS G_CDS: 0.93 Total: 11.84 kcal
Atomic # 6 Polarization: 13.54 SS G_CDS: 5.78 Total: 19.32 kcal
Atomic # 7 Polarization: -105.22 SS G_CDS: -4.84 Total: -110.06 kcal
Atomic # 8 Polarization: -43.32 SS G_CDS: -2.57 Total: -45.89 kcal
Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal
Total: -78.51 1.32 -77.19 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049092587.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.468 kcal
(2) G-P(sol) polarization free energy of solvation -78.514 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.982 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.325 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.189 kcal
(6) G-S(sol) free energy of system = (1) + (5) -116.657 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds