Wall clock time and date at job start Tue Mar 31 2020 13:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00162 * 2 1 4 4 H 1.48495 * 109.47431 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46972 * 299.99409 * 3 2 1 6 6 H 1.48507 * 109.47173 * 59.99395 * 3 2 1 7 7 C 1.38813 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99951 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00402 * 0.02562 * 7 2 1 10 10 C 1.46663 * 125.34001 * 180.02562 * 9 7 2 11 11 C 1.53727 * 107.94540 * 179.45296 * 10 9 7 12 12 H 1.09000 * 113.05641 * 219.99528 * 11 10 9 13 13 C 1.53688 * 109.34502 * 93.74050 * 11 10 9 14 14 N 1.46636 * 108.01202 * 232.44709 * 13 11 10 15 15 C 1.34776 * 125.32937 * 179.17995 * 14 13 11 16 16 O 1.21287 * 120.00043 * 0.02562 * 15 14 13 17 17 C 1.50694 * 120.00020 * 179.97438 * 15 14 13 18 18 O 1.42900 * 109.47436 * 180.02562 * 17 15 14 19 19 C 1.42896 * 114.00439 * 180.02562 * 18 17 15 20 20 C 1.53178 * 109.54208 * 269.82127 * 19 18 17 21 21 C 1.53108 * 109.15797 * 183.23995 * 20 19 18 22 22 O 1.42900 * 109.48765 * 57.47451 * 21 20 19 23 23 C 1.42906 * 114.09749 * 298.88966 * 22 21 20 24 24 C 1.53091 * 109.41416 * 61.15868 * 23 22 21 25 25 C 1.46742 * 109.34326 * 359.16592 * 14 13 11 26 26 C 1.53934 * 106.71885 * 18.33846 * 25 14 13 27 27 H 1.09008 * 113.01089 * 209.16974 * 26 25 14 28 28 C 1.46774 * 125.33569 * 359.97438 * 9 7 2 29 29 H 0.97003 * 119.99806 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.77731 * 59.82371 * 10 9 7 31 31 H 1.09009 * 109.77109 * 299.06714 * 10 9 7 32 32 H 1.09002 * 109.75712 * 352.09025 * 13 11 10 33 33 H 1.09001 * 109.75852 * 112.79979 * 13 11 10 34 34 H 1.09004 * 109.47458 * 300.00704 * 17 15 14 35 35 H 1.08999 * 109.47362 * 60.00579 * 17 15 14 36 36 H 1.08994 * 109.54395 * 29.99504 * 19 18 17 37 37 H 1.09000 * 109.52597 * 303.06015 * 20 19 18 38 38 H 1.09000 * 109.52106 * 63.24577 * 20 19 18 39 39 H 1.09002 * 109.40190 * 297.49443 * 21 20 19 40 40 H 1.08998 * 109.49418 * 177.51480 * 21 20 19 41 41 H 1.08994 * 109.48026 * 301.17732 * 23 22 21 42 42 H 1.09001 * 109.49043 * 181.14423 * 23 22 21 43 43 H 1.08993 * 109.52556 * 182.48400 * 24 23 22 44 44 H 1.09008 * 109.57576 * 62.32685 * 24 23 22 45 45 H 1.09005 * 110.00507 * 259.02990 * 25 14 13 46 46 H 1.08995 * 110.01348 * 137.65823 * 25 14 13 47 47 H 1.08999 * 110.02523 * 79.22951 * 28 9 7 48 48 H 1.09003 * 110.02832 * 317.81270 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 1.9375 -3.7210 0.0016 11 6 0.8061 -4.7616 0.0152 12 1 1.0171 -5.6132 0.6619 13 6 0.4840 -5.1823 -1.4275 14 7 -0.9589 -5.0228 -1.6349 15 6 -1.6139 -5.2786 -2.7846 16 8 -1.0038 -5.6754 -3.7549 17 6 -3.1046 -5.0727 -2.8644 18 8 -3.5627 -5.4097 -4.1754 19 6 -4.9706 -5.2481 -4.3586 20 6 -5.6867 -6.5550 -4.0042 21 6 -7.1844 -6.3982 -4.2805 22 8 -7.3818 -6.0430 -5.6505 23 6 -6.7746 -4.8050 -6.0256 24 6 -5.2602 -4.8985 -5.8216 25 6 -1.5779 -4.5415 -0.3946 26 6 -0.4447 -3.9582 0.4686 27 1 -0.6410 -4.0349 1.5381 28 6 -0.1359 -2.5246 0.0005 29 1 -0.4850 0.8401 -0.0004 30 1 2.5592 -3.8406 0.8888 31 1 2.5449 -3.8485 -0.8945 32 1 1.0291 -4.5481 -2.1267 33 1 0.7652 -6.2244 -1.5790 34 1 -3.5993 -5.7106 -2.1319 35 1 -3.3390 -4.0291 -2.6544 36 1 -5.3327 -4.4475 -3.7138 37 1 -5.2880 -7.3658 -4.6138 38 1 -5.5312 -6.7810 -2.9492 39 1 -7.5908 -5.6155 -3.6399 40 1 -7.6933 -7.3393 -4.0719 41 1 -7.1756 -4.0015 -5.4079 42 1 -6.9880 -4.5983 -7.0744 43 1 -4.8000 -3.9410 -6.0652 44 1 -4.8517 -5.6743 -6.4693 45 1 -2.0570 -5.3691 0.1286 46 1 -2.3115 -3.7674 -0.6198 47 1 -0.5253 -2.3688 -1.0055 48 1 -0.5782 -1.8038 0.6883 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049092587.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:05 Heat of formation + Delta-G solvation = -116.657368 kcal Electronic energy + Delta-G solvation = -28339.431345 eV Core-core repulsion = 24394.259541 eV Total energy + Delta-G solvation = -3945.171804 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.61251 -40.62310 -39.66459 -38.19336 -36.62381 -34.21352 -33.55175 -32.11480 -31.71880 -31.55296 -29.22946 -27.32009 -26.76257 -25.22281 -24.61479 -24.24013 -21.93686 -21.46408 -20.87787 -20.52286 -18.90087 -18.51045 -17.85545 -17.44313 -17.22266 -17.03114 -16.73907 -16.39925 -16.19654 -15.77115 -15.57294 -15.42444 -14.84200 -14.69066 -14.63333 -14.29316 -13.99129 -13.75683 -13.56008 -13.45167 -13.29010 -13.22339 -13.11132 -12.79200 -12.70821 -12.45273 -12.26310 -11.98659 -11.95958 -11.87464 -11.82510 -11.60233 -11.39306 -11.26427 -10.97620 -10.72274 -10.68707 -10.58000 -9.68724 -8.87849 -7.81773 -5.21968 1.44841 1.45781 1.46287 1.55585 1.64943 2.47941 2.73248 2.96600 3.28920 3.35958 3.46502 3.66948 3.72011 3.80746 3.86314 3.94556 3.96574 4.05003 4.09353 4.19855 4.23288 4.26543 4.34232 4.39022 4.52365 4.52863 4.64405 4.66645 4.75886 4.76547 4.81854 4.82829 4.92903 4.96567 5.03434 5.06088 5.09475 5.16921 5.22744 5.40880 5.47085 5.66320 5.82023 6.05597 6.22383 6.28573 6.44905 7.04797 7.12288 7.79980 8.40286 9.22292 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.016298 B = 0.002734 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.563260 B =10239.603054 C =11201.139775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.064 4.064 3 Si 0.976 3.024 4 H -0.270 1.270 5 H -0.296 1.296 6 H -0.287 1.287 7 C -0.241 4.241 8 H 0.077 0.923 9 N -0.626 5.626 10 C 0.136 3.864 11 C -0.091 4.091 12 H 0.137 0.863 13 C 0.122 3.878 14 N -0.608 5.608 15 C 0.519 3.481 16 O -0.581 6.581 17 C 0.056 3.944 18 O -0.387 6.387 19 C 0.079 3.921 20 C -0.174 4.174 21 C 0.062 3.938 22 O -0.403 6.403 23 C 0.067 3.933 24 C -0.155 4.155 25 C 0.111 3.889 26 C -0.111 4.111 27 H 0.125 0.875 28 C 0.178 3.822 29 H 0.246 0.754 30 H 0.037 0.963 31 H 0.015 0.985 32 H 0.031 0.969 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.111 0.889 41 H 0.070 0.930 42 H 0.111 0.889 43 H 0.080 0.920 44 H 0.063 0.937 45 H 0.112 0.888 46 H 0.080 0.920 47 H -0.020 1.020 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.545 -13.470 -1.257 20.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.257 4.257 3 Si 0.805 3.195 4 H -0.194 1.194 5 H -0.223 1.223 6 H -0.214 1.214 7 C -0.370 4.370 8 H 0.095 0.905 9 N -0.352 5.352 10 C 0.011 3.989 11 C -0.110 4.110 12 H 0.154 0.846 13 C -0.001 4.001 14 N -0.342 5.342 15 C 0.308 3.692 16 O -0.461 6.461 17 C -0.023 4.023 18 O -0.306 6.306 19 C 0.022 3.978 20 C -0.212 4.212 21 C -0.014 4.014 22 O -0.322 6.322 23 C -0.009 4.009 24 C -0.193 4.193 25 C -0.011 4.011 26 C -0.131 4.131 27 H 0.143 0.857 28 C 0.053 3.947 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.033 0.967 32 H 0.050 0.950 33 H 0.096 0.904 34 H 0.134 0.866 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.111 0.889 39 H 0.088 0.912 40 H 0.129 0.871 41 H 0.088 0.912 42 H 0.129 0.871 43 H 0.098 0.902 44 H 0.082 0.918 45 H 0.130 0.870 46 H 0.098 0.902 47 H -0.003 1.003 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.268 -13.669 -2.123 20.603 hybrid contribution 1.056 1.546 -0.113 1.876 sum -14.212 -12.123 -2.236 18.813 Atomic orbital electron populations 1.70097 1.05949 1.24919 1.58454 1.25567 0.96709 1.00734 1.02656 0.85044 0.78090 0.79658 0.76743 1.19421 1.22327 1.21362 1.19445 0.90962 0.83901 1.42666 0.90484 1.44589 1.02894 1.00947 1.86779 1.21349 0.94787 0.84697 0.98088 1.22765 0.95267 0.98274 0.94682 0.84554 1.21799 0.80908 1.00676 0.96678 1.48247 1.08927 1.65024 1.11982 1.20590 0.90432 0.77115 0.81023 1.90681 1.70353 1.48114 1.36915 1.22276 0.89920 1.02856 0.87275 1.88032 1.24176 1.88538 1.29871 1.22414 0.79877 0.97800 0.97732 1.22718 0.97055 0.97992 1.03485 1.22714 0.93854 1.02418 0.82433 1.87917 1.75425 1.40538 1.28355 1.22665 0.89514 0.86200 1.02552 1.22316 0.98397 1.03116 0.95478 1.22202 0.95694 0.99758 0.83456 1.23212 0.93829 0.95106 1.00922 0.85750 1.21227 0.83699 0.93177 0.96623 0.94387 0.94479 0.96711 0.95034 0.90354 0.86635 0.88758 0.89834 0.91888 0.88906 0.91220 0.87092 0.91223 0.87116 0.90157 0.91826 0.86977 0.90151 1.00251 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.99 10.16 21.65 0.22 -54.77 16 2 C -0.06 -3.58 5.48 84.86 0.47 -3.12 16 3 Si 0.98 45.57 29.55 68.60 2.03 47.60 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 6 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 7 C -0.24 -13.44 10.25 84.03 0.86 -12.58 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 9 N -0.63 -31.47 3.38 -697.64 -2.36 -33.82 16 10 C 0.14 5.37 6.62 86.59 0.57 5.94 16 11 C -0.09 -2.69 4.02 -9.49 -0.04 -2.73 16 12 H 0.14 2.93 8.14 -2.39 -0.02 2.91 16 13 C 0.12 4.00 6.22 86.59 0.54 4.54 16 14 N -0.61 -18.77 3.30 -817.69 -2.70 -21.47 16 15 C 0.52 17.49 7.91 87.66 0.69 18.18 16 16 O -0.58 -25.30 16.81 15.98 0.27 -25.03 16 17 C 0.06 1.35 5.27 71.23 0.38 1.72 16 18 O -0.39 -10.79 9.53 -129.94 -1.24 -12.03 16 19 C 0.08 1.53 2.69 30.71 0.08 1.62 16 20 C -0.17 -2.76 5.77 30.69 0.18 -2.59 16 21 C 0.06 0.81 6.84 72.02 0.49 1.30 16 22 O -0.40 -7.22 10.77 -148.98 -1.60 -8.83 16 23 C 0.07 0.99 6.84 72.01 0.49 1.48 16 24 C -0.16 -2.97 5.79 30.69 0.18 -2.79 16 25 C 0.11 2.70 5.75 86.65 0.50 3.20 16 26 C -0.11 -3.39 4.17 -9.33 -0.04 -3.43 16 27 H 0.12 3.19 8.14 -2.38 -0.02 3.17 16 28 C 0.18 8.15 4.92 86.64 0.43 8.57 16 29 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 30 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.01 0.62 7.44 -2.38 -0.02 0.60 16 32 H 0.03 1.28 7.29 -2.39 -0.02 1.27 16 33 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.12 1.86 7.97 -2.38 -0.02 1.84 16 35 H 0.09 2.04 7.82 -2.39 -0.02 2.02 16 36 H 0.08 1.28 7.79 -2.39 -0.02 1.26 16 37 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.09 1.13 7.97 -2.39 -0.02 1.11 16 39 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 45 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 46 H 0.08 1.93 7.42 -2.39 -0.02 1.91 16 47 H -0.02 -1.08 7.71 -2.39 -0.02 -1.09 16 48 H 0.06 3.17 6.19 -2.39 -0.01 3.16 16 Total: -1.00 -78.51 374.80 1.32 -77.19 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 0.93 Total: 11.84 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: 5.78 Total: 19.32 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -4.84 Total: -110.06 kcal Atomic # 8 Polarization: -43.32 SS G_CDS: -2.57 Total: -45.89 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -78.51 1.32 -77.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049092587.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.468 kcal (2) G-P(sol) polarization free energy of solvation -78.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds