Wall clock time and date at job start Tue Mar 31 2020 14:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00263 * 2 1 4 4 H 1.48504 * 109.47224 * 267.66919 * 3 2 1 5 5 H 1.48500 * 109.47405 * 27.66734 * 3 2 1 6 6 H 1.48496 * 109.47248 * 147.66929 * 3 2 1 7 7 C 1.38813 * 119.99571 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00172 * 338.01173 * 7 2 1 9 9 N 1.36943 * 119.99736 * 158.00755 * 7 2 1 10 10 C 1.46894 * 120.46058 * 149.70317 * 9 7 2 11 11 C 1.53357 * 108.73896 * 124.38876 * 10 9 7 12 12 C 1.52553 * 109.12658 * 52.25986 * 11 10 9 13 13 C 1.52961 * 114.06288 * 75.53994 * 12 11 10 14 14 N 1.47160 * 87.85557 * 139.43958 * 13 12 11 15 15 C 1.34776 * 136.00181 * 153.33342 * 14 13 12 16 16 O 1.21288 * 119.99864 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.00250 * 179.97438 * 15 14 13 18 18 C 1.53002 * 109.47289 * 179.97438 * 17 15 14 19 19 O 1.42973 * 109.46955 * 65.00555 * 18 17 15 20 20 C 1.43088 * 113.77032 * 178.79257 * 19 18 17 21 21 C 1.53255 * 108.94257 * 302.02727 * 20 19 18 22 22 C 1.53268 * 108.84456 * 54.52764 * 21 20 19 23 23 O 1.42963 * 109.47387 * 185.00159 * 18 17 15 24 24 C 1.47158 * 87.99857 * 333.59442 * 14 13 12 25 25 C 1.52556 * 113.43527 * 302.66770 * 12 11 10 26 26 C 1.46886 * 120.46250 * 329.72915 * 9 7 2 27 27 H 0.97003 * 119.99729 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.59403 * 4.61064 * 10 9 7 29 29 H 1.08996 * 109.59216 * 244.16529 * 10 9 7 30 30 H 1.08998 * 109.52914 * 292.36782 * 11 10 9 31 31 H 1.09000 * 109.58940 * 172.18744 * 11 10 9 32 32 H 1.08999 * 113.49324 * 24.69342 * 13 12 11 33 33 H 1.09001 * 113.54744 * 254.19272 * 13 12 11 34 34 H 1.09007 * 109.46560 * 60.00855 * 17 15 14 35 35 H 1.08990 * 109.47303 * 300.00624 * 17 15 14 36 36 H 1.08994 * 109.47603 * 305.00504 * 18 17 15 37 37 H 1.09003 * 109.55870 * 182.19013 * 20 19 18 38 38 H 1.08996 * 109.64685 * 61.92390 * 20 19 18 39 39 H 1.08999 * 109.58203 * 294.71944 * 21 20 19 40 40 H 1.09001 * 109.67778 * 174.39192 * 21 20 19 41 41 H 1.09000 * 109.55631 * 185.63662 * 22 21 20 42 42 H 1.09000 * 109.64353 * 65.36433 * 22 21 20 43 43 H 1.09001 * 113.49016 * 141.15931 * 24 14 13 44 44 H 1.09003 * 113.49026 * 271.66146 * 24 14 13 45 45 H 1.08997 * 109.52879 * 177.21599 * 25 12 11 46 46 H 1.09001 * 109.52251 * 297.42691 * 25 12 11 47 47 H 1.09004 * 109.58928 * 355.37876 * 26 9 7 48 48 H 1.08997 * 109.59021 * 115.82087 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.5471 2.0179 -1.3989 5 1 1.4240 2.6664 0.6501 6 1 3.5223 1.4548 0.7487 7 6 2.0102 -1.2022 0.0005 8 1 1.5291 -2.1033 0.3511 9 7 3.3049 -1.2456 -0.4436 10 6 4.2505 -2.2226 0.1123 11 6 4.8402 -3.0473 -1.0383 12 6 5.3934 -2.1009 -2.0993 13 6 6.7231 -1.4471 -1.7196 14 7 7.1577 -1.6523 -3.1105 15 6 8.0258 -1.0577 -3.9527 16 8 8.6708 -0.0997 -3.5820 17 6 8.1960 -1.5837 -5.3546 18 6 9.2320 -0.7358 -6.0953 19 8 10.5099 -0.8945 -5.4741 20 6 11.5574 -0.1588 -6.1135 21 6 11.6520 -0.5992 -7.5784 22 6 10.2748 -0.4426 -8.2324 23 8 9.3088 -1.1602 -7.4583 24 6 6.2238 -2.7874 -3.1806 25 6 4.3540 -1.1262 -2.6442 26 6 3.7675 -0.3154 -1.4820 27 1 -0.4850 0.8401 -0.0004 28 1 3.7289 -2.8827 0.8053 29 1 5.0513 -1.6996 0.6350 30 1 4.0608 -3.6705 -1.4767 31 1 5.6431 -3.6801 -0.6603 32 1 7.2990 -2.0228 -0.9951 33 1 6.6289 -0.3967 -1.4444 34 1 7.2424 -1.5325 -5.8801 35 1 8.5342 -2.6191 -5.3155 36 1 8.9374 0.3129 -6.0574 37 1 12.5035 -0.3589 -5.6105 38 1 11.3377 0.9077 -6.0665 39 1 11.9626 -1.6429 -7.6268 40 1 12.3779 0.0226 -8.1024 41 1 10.3036 -0.8456 -9.2447 42 1 10.0035 0.6126 -8.2673 43 1 5.7078 -2.8670 -4.1374 44 1 6.6625 -3.7315 -2.8575 45 1 4.8264 -0.4510 -3.3576 46 1 3.5576 -1.6820 -3.1391 47 1 2.9276 0.2805 -1.8393 48 1 4.5346 0.3402 -1.0700 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050494014.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:47 Heat of formation + Delta-G solvation = -64.222708 kcal Electronic energy + Delta-G solvation = -28614.464052 eV Core-core repulsion = 24671.565985 eV Total energy + Delta-G solvation = -3942.898067 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.96271 -40.21587 -38.36919 -36.18612 -35.91979 -33.50747 -32.55515 -31.09271 -30.53964 -30.16876 -27.29045 -26.31495 -26.19247 -24.17960 -23.37287 -22.93577 -21.49380 -21.06892 -19.25668 -18.22793 -17.81945 -17.08643 -16.77062 -16.48878 -16.22005 -15.82912 -15.57439 -15.18222 -15.06647 -14.88942 -14.35132 -14.04970 -13.78052 -13.61758 -13.51244 -13.31903 -13.01384 -12.80549 -12.55207 -12.24740 -12.05413 -11.88285 -11.77274 -11.72921 -11.57428 -11.43408 -11.41395 -10.76042 -10.60031 -10.45526 -10.34142 -10.12083 -10.00232 -9.95451 -9.81079 -9.57273 -9.48369 -8.66308 -8.55289 -6.94039 -5.97185 -3.33407 2.58036 2.67129 3.33099 3.35813 3.39458 3.49605 3.53638 4.33557 4.35119 4.35773 4.45410 4.53486 4.56093 4.70117 4.81568 4.89278 4.94826 4.98155 5.03049 5.15377 5.19982 5.33658 5.36685 5.37708 5.40012 5.42195 5.46242 5.47067 5.64675 5.74211 5.78977 5.86825 5.94406 6.03404 6.16285 6.29311 6.35259 6.44529 6.51408 6.62531 6.67303 6.70748 6.87357 6.91780 7.76164 7.98895 8.14362 8.33366 8.94957 9.71769 10.10722 11.18817 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.023771 B = 0.002706 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.631952 B =10343.751398 C =10744.944037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.027 3.973 3 Si 0.878 3.122 4 H -0.286 1.286 5 H -0.303 1.303 6 H -0.273 1.273 7 C -0.262 4.262 8 H 0.084 0.916 9 N -0.604 5.604 10 C 0.148 3.852 11 C -0.117 4.117 12 C -0.079 4.079 13 C 0.113 3.887 14 N -0.644 5.644 15 C 0.547 3.453 16 O -0.535 6.535 17 C -0.121 4.121 18 C 0.265 3.735 19 O -0.378 6.378 20 C 0.058 3.942 21 C -0.194 4.194 22 C 0.059 3.941 23 O -0.395 6.395 24 C 0.102 3.898 25 C -0.106 4.106 26 C 0.130 3.870 27 H 0.263 0.737 28 H 0.065 0.935 29 H 0.023 0.977 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.055 0.945 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.055 0.945 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.054 0.946 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.715 -5.005 -14.729 25.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.172 4.172 3 Si 0.708 3.292 4 H -0.214 1.214 5 H -0.231 1.231 6 H -0.198 1.198 7 C -0.390 4.390 8 H 0.101 0.899 9 N -0.328 5.328 10 C 0.022 3.978 11 C -0.157 4.157 12 C -0.080 4.080 13 C -0.009 4.009 14 N -0.379 5.379 15 C 0.337 3.663 16 O -0.412 6.412 17 C -0.160 4.160 18 C 0.169 3.831 19 O -0.298 6.298 20 C -0.019 4.019 21 C -0.231 4.231 22 C -0.018 4.018 23 O -0.316 6.316 24 C -0.021 4.021 25 C -0.146 4.146 26 C 0.004 3.996 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.041 0.959 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.133 0.867 35 H 0.126 0.874 36 H 0.083 0.917 37 H 0.116 0.884 38 H 0.073 0.927 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.118 0.882 42 H 0.073 0.927 43 H 0.096 0.904 44 H 0.103 0.897 45 H 0.073 0.927 46 H 0.091 0.909 47 H 0.094 0.906 48 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 20.967 -4.543 -14.562 25.929 hybrid contribution 0.704 1.303 -0.255 1.503 sum 21.671 -3.240 -14.816 26.451 Atomic orbital electron populations 1.69857 1.05804 1.26628 1.52495 1.25343 0.95165 0.97568 0.99157 0.87036 0.79969 0.84763 0.77436 1.21370 1.23058 1.19769 1.18883 0.85787 0.94668 1.39645 0.89855 1.44331 1.08846 1.38729 1.40883 1.20933 0.92274 0.91494 0.93086 1.21872 0.99934 0.97095 0.96761 1.21663 0.93600 0.96876 0.95835 1.23077 0.92462 1.02309 0.83031 1.49582 1.40820 1.32910 1.14596 1.19635 0.77589 0.83054 0.86051 1.90730 1.45123 1.27664 1.77663 1.21363 0.99734 1.01877 0.93068 1.22868 0.84424 0.97166 0.78617 1.88177 1.17485 1.70345 1.53823 1.22606 0.91701 0.95506 0.92058 1.22814 0.98707 1.03888 0.97732 1.22642 0.87266 0.96527 0.95322 1.88055 1.59009 1.62616 1.21924 1.23185 0.88279 0.90212 1.00387 1.21716 0.96727 0.97409 0.98725 1.21331 0.97594 0.92182 0.88502 0.92755 0.91616 0.95939 0.91075 0.92218 0.89885 0.90405 0.86677 0.87394 0.91680 0.88367 0.92721 0.90009 0.89691 0.88191 0.92688 0.90400 0.89650 0.92734 0.90933 0.90637 0.96002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.38 13.97 55.49 0.78 -26.61 16 2 C 0.03 0.77 5.17 -17.43 -0.09 0.68 16 3 Si 0.88 22.31 24.56 -169.99 -4.18 18.13 16 4 H -0.29 -7.01 6.44 56.52 0.36 -6.65 16 5 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 6 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.26 -7.09 9.97 -15.06 -0.15 -7.24 16 8 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 9 N -0.60 -13.71 2.68 -172.18 -0.46 -14.17 16 10 C 0.15 2.69 6.42 -3.64 -0.02 2.67 16 11 C -0.12 -1.65 5.31 -26.78 -0.14 -1.79 16 12 C -0.08 -1.10 0.83 -155.17 -0.13 -1.23 16 13 C 0.11 1.61 7.56 -8.22 -0.06 1.55 16 14 N -0.64 -8.74 3.46 -185.34 -0.64 -9.38 16 15 C 0.55 8.02 7.96 -10.99 -0.09 7.93 16 16 O -0.54 -9.83 16.19 -8.88 -0.14 -9.98 16 17 C -0.12 -1.36 5.61 -27.88 -0.16 -1.52 16 18 C 0.26 3.19 2.80 37.16 0.10 3.29 16 19 O -0.38 -4.95 9.77 -64.76 -0.63 -5.58 16 20 C 0.06 0.54 6.96 37.29 0.26 0.80 16 21 C -0.19 -1.37 6.35 -26.46 -0.17 -1.54 16 22 C 0.06 0.46 6.96 37.30 0.26 0.72 16 23 O -0.40 -4.33 10.54 -59.03 -0.62 -4.95 16 24 C 0.10 1.13 7.56 -8.38 -0.06 1.07 16 25 C -0.11 -1.78 5.25 -26.77 -0.14 -1.92 16 26 C 0.13 2.74 4.14 -3.65 -0.02 2.73 16 27 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.07 1.20 7.92 -51.93 -0.41 0.78 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 32 H 0.08 1.06 8.06 -51.93 -0.42 0.64 16 33 H 0.08 1.27 7.53 -51.93 -0.39 0.88 16 34 H 0.12 1.09 8.14 -51.92 -0.42 0.66 16 35 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 0.82 7.96 -51.93 -0.41 0.41 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 44 H 0.09 0.79 8.09 -51.93 -0.42 0.36 16 45 H 0.05 0.87 7.95 -51.93 -0.41 0.46 16 46 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 47 H 0.08 1.78 4.66 -51.93 -0.24 1.54 16 48 H 0.02 0.47 6.93 -51.93 -0.36 0.11 16 LS Contribution 371.92 15.07 5.60 5.60 Total: -1.00 -33.82 371.92 -9.06 -42.88 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -8.16 Total: -2.14 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -0.60 Total: 6.19 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: -0.33 Total: -50.16 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -1.40 Total: -20.51 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.18 Total: 18.13 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.82 -9.06 -42.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050494014.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.347 kcal (2) G-P(sol) polarization free energy of solvation -33.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds