Wall clock time and date at job start Tue Mar 31 2020 14:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00263 * 2 1 4 4 H 1.48504 * 109.47224 * 267.66919 * 3 2 1 5 5 H 1.48500 * 109.47405 * 27.66734 * 3 2 1 6 6 H 1.48496 * 109.47248 * 147.66929 * 3 2 1 7 7 C 1.38813 * 119.99571 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00172 * 338.01173 * 7 2 1 9 9 N 1.36943 * 119.99736 * 158.00755 * 7 2 1 10 10 C 1.46894 * 120.46058 * 149.70317 * 9 7 2 11 11 C 1.53357 * 108.73896 * 124.38876 * 10 9 7 12 12 C 1.52553 * 109.12658 * 52.25986 * 11 10 9 13 13 C 1.52961 * 114.06288 * 75.53994 * 12 11 10 14 14 N 1.47160 * 87.85557 * 139.43958 * 13 12 11 15 15 C 1.34776 * 136.00181 * 153.33342 * 14 13 12 16 16 O 1.21288 * 119.99864 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.00250 * 179.97438 * 15 14 13 18 18 C 1.53002 * 109.47289 * 179.97438 * 17 15 14 19 19 O 1.42973 * 109.46955 * 65.00555 * 18 17 15 20 20 C 1.43088 * 113.77032 * 178.79257 * 19 18 17 21 21 C 1.53255 * 108.94257 * 302.02727 * 20 19 18 22 22 C 1.53268 * 108.84456 * 54.52764 * 21 20 19 23 23 O 1.42963 * 109.47387 * 185.00159 * 18 17 15 24 24 C 1.47158 * 87.99857 * 333.59442 * 14 13 12 25 25 C 1.52556 * 113.43527 * 302.66770 * 12 11 10 26 26 C 1.46886 * 120.46250 * 329.72915 * 9 7 2 27 27 H 0.97003 * 119.99729 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.59403 * 4.61064 * 10 9 7 29 29 H 1.08996 * 109.59216 * 244.16529 * 10 9 7 30 30 H 1.08998 * 109.52914 * 292.36782 * 11 10 9 31 31 H 1.09000 * 109.58940 * 172.18744 * 11 10 9 32 32 H 1.08999 * 113.49324 * 24.69342 * 13 12 11 33 33 H 1.09001 * 113.54744 * 254.19272 * 13 12 11 34 34 H 1.09007 * 109.46560 * 60.00855 * 17 15 14 35 35 H 1.08990 * 109.47303 * 300.00624 * 17 15 14 36 36 H 1.08994 * 109.47603 * 305.00504 * 18 17 15 37 37 H 1.09003 * 109.55870 * 182.19013 * 20 19 18 38 38 H 1.08996 * 109.64685 * 61.92390 * 20 19 18 39 39 H 1.08999 * 109.58203 * 294.71944 * 21 20 19 40 40 H 1.09001 * 109.67778 * 174.39192 * 21 20 19 41 41 H 1.09000 * 109.55631 * 185.63662 * 22 21 20 42 42 H 1.09000 * 109.64353 * 65.36433 * 22 21 20 43 43 H 1.09001 * 113.49016 * 141.15931 * 24 14 13 44 44 H 1.09003 * 113.49026 * 271.66146 * 24 14 13 45 45 H 1.08997 * 109.52879 * 177.21599 * 25 12 11 46 46 H 1.09001 * 109.52251 * 297.42691 * 25 12 11 47 47 H 1.09004 * 109.58928 * 355.37876 * 26 9 7 48 48 H 1.08997 * 109.59021 * 115.82087 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.5471 2.0179 -1.3989 5 1 1.4240 2.6664 0.6501 6 1 3.5223 1.4548 0.7487 7 6 2.0102 -1.2022 0.0005 8 1 1.5291 -2.1033 0.3511 9 7 3.3049 -1.2456 -0.4436 10 6 4.2505 -2.2226 0.1123 11 6 4.8402 -3.0473 -1.0383 12 6 5.3934 -2.1009 -2.0993 13 6 6.7231 -1.4471 -1.7196 14 7 7.1577 -1.6523 -3.1105 15 6 8.0258 -1.0577 -3.9527 16 8 8.6708 -0.0997 -3.5820 17 6 8.1960 -1.5837 -5.3546 18 6 9.2320 -0.7358 -6.0953 19 8 10.5099 -0.8945 -5.4741 20 6 11.5574 -0.1588 -6.1135 21 6 11.6520 -0.5992 -7.5784 22 6 10.2748 -0.4426 -8.2324 23 8 9.3088 -1.1602 -7.4583 24 6 6.2238 -2.7874 -3.1806 25 6 4.3540 -1.1262 -2.6442 26 6 3.7675 -0.3154 -1.4820 27 1 -0.4850 0.8401 -0.0004 28 1 3.7289 -2.8827 0.8053 29 1 5.0513 -1.6996 0.6350 30 1 4.0608 -3.6705 -1.4767 31 1 5.6431 -3.6801 -0.6603 32 1 7.2990 -2.0228 -0.9951 33 1 6.6289 -0.3967 -1.4444 34 1 7.2424 -1.5325 -5.8801 35 1 8.5342 -2.6191 -5.3155 36 1 8.9374 0.3129 -6.0574 37 1 12.5035 -0.3589 -5.6105 38 1 11.3377 0.9077 -6.0665 39 1 11.9626 -1.6429 -7.6268 40 1 12.3779 0.0226 -8.1024 41 1 10.3036 -0.8456 -9.2447 42 1 10.0035 0.6126 -8.2673 43 1 5.7078 -2.8670 -4.1374 44 1 6.6625 -3.7315 -2.8575 45 1 4.8264 -0.4510 -3.3576 46 1 3.5576 -1.6820 -3.1391 47 1 2.9276 0.2805 -1.8393 48 1 4.5346 0.3402 -1.0700 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050494014.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:46 Heat of formation + Delta-G solvation = -87.109188 kcal Electronic energy + Delta-G solvation = -28615.456484 eV Core-core repulsion = 24671.565985 eV Total energy + Delta-G solvation = -3943.890499 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.05585 -41.03422 -39.53931 -37.73405 -36.72108 -34.40620 -34.20332 -32.53438 -31.98836 -31.25968 -28.62249 -27.22285 -26.96318 -25.77949 -24.44793 -24.34948 -22.65155 -22.14578 -20.39034 -19.60582 -18.68194 -18.36274 -17.92156 -17.50236 -17.28922 -17.19268 -16.67484 -16.41319 -15.91665 -15.77401 -15.72993 -15.34430 -15.23386 -15.04899 -14.59037 -14.33820 -14.30064 -13.94119 -13.82512 -13.62016 -13.33546 -13.22722 -13.09662 -12.85323 -12.54792 -12.45326 -12.21683 -12.16618 -12.12491 -12.09928 -11.67800 -11.47890 -11.35156 -11.20240 -11.04021 -10.80465 -10.71911 -10.61235 -9.71078 -8.84601 -8.17489 -5.47462 1.27748 1.38939 1.46956 1.55517 1.68161 2.40853 2.59312 2.59801 3.05933 3.29618 3.39923 3.50543 3.71007 3.75390 3.77843 3.82195 3.90715 4.01316 4.16671 4.20137 4.35436 4.38818 4.40684 4.45131 4.47141 4.51266 4.60458 4.64669 4.66148 4.74341 4.79210 4.79404 4.82251 4.86616 4.93748 5.03455 5.05213 5.08113 5.21919 5.26358 5.34355 5.56930 5.79061 5.92398 6.10089 6.16387 6.73412 6.96544 7.07121 7.65827 8.07905 9.02680 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.023771 B = 0.002706 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.631952 B =10343.751398 C =10744.944037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.028 4.028 3 Si 0.933 3.067 4 H -0.276 1.276 5 H -0.311 1.311 6 H -0.272 1.272 7 C -0.242 4.242 8 H 0.057 0.943 9 N -0.618 5.618 10 C 0.139 3.861 11 C -0.102 4.102 12 C -0.081 4.081 13 C 0.109 3.891 14 N -0.646 5.646 15 C 0.542 3.458 16 O -0.583 6.583 17 C -0.112 4.112 18 C 0.264 3.736 19 O -0.405 6.405 20 C 0.046 3.954 21 C -0.184 4.184 22 C 0.047 3.953 23 O -0.405 6.405 24 C 0.118 3.882 25 C -0.096 4.096 26 C 0.126 3.874 27 H 0.260 0.740 28 H 0.060 0.940 29 H 0.030 0.970 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.049 0.951 34 H 0.136 0.864 35 H 0.125 0.875 36 H 0.050 0.950 37 H 0.108 0.892 38 H 0.052 0.948 39 H 0.079 0.921 40 H 0.111 0.889 41 H 0.122 0.878 42 H 0.060 0.940 43 H 0.098 0.902 44 H 0.120 0.880 45 H 0.061 0.939 46 H 0.071 0.929 47 H 0.046 0.954 48 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.266 -6.756 -16.558 29.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.223 4.223 3 Si 0.763 3.237 4 H -0.203 1.203 5 H -0.239 1.239 6 H -0.197 1.197 7 C -0.372 4.372 8 H 0.075 0.925 9 N -0.342 5.342 10 C 0.014 3.986 11 C -0.142 4.142 12 C -0.082 4.082 13 C -0.014 4.014 14 N -0.380 5.380 15 C 0.333 3.667 16 O -0.463 6.463 17 C -0.152 4.152 18 C 0.169 3.831 19 O -0.326 6.326 20 C -0.030 4.030 21 C -0.222 4.222 22 C -0.028 4.028 23 O -0.326 6.326 24 C -0.003 4.003 25 C -0.135 4.135 26 C 0.001 3.999 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.048 0.952 30 H 0.089 0.911 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.067 0.933 34 H 0.154 0.846 35 H 0.143 0.857 36 H 0.067 0.933 37 H 0.126 0.874 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.130 0.870 41 H 0.140 0.860 42 H 0.078 0.922 43 H 0.117 0.883 44 H 0.137 0.863 45 H 0.079 0.921 46 H 0.090 0.910 47 H 0.064 0.936 48 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 23.558 -6.332 -16.412 29.402 hybrid contribution -0.042 1.808 0.343 1.841 sum 23.516 -4.524 -16.069 28.839 Atomic orbital electron populations 1.69965 1.07214 1.27032 1.55629 1.25863 0.95650 1.00349 1.00455 0.86122 0.78455 0.81374 0.77738 1.20298 1.23919 1.19669 1.18874 0.87534 0.93414 1.37336 0.92523 1.44485 1.08155 1.39845 1.41750 1.21183 0.91536 0.90939 0.94917 1.21734 1.00938 0.96575 0.94909 1.21535 0.92720 0.96731 0.97242 1.23143 0.93042 1.01050 0.84163 1.49667 1.40655 1.33518 1.14159 1.20211 0.76945 0.82390 0.87157 1.90706 1.47116 1.29802 1.78678 1.21361 1.00642 1.02232 0.90926 1.22778 0.84428 0.96571 0.79358 1.88134 1.18398 1.71001 1.55066 1.22857 0.91258 0.95246 0.93668 1.22759 0.98997 1.04224 0.96202 1.22952 0.87025 0.96904 0.95962 1.88025 1.60037 1.63115 1.21405 1.23266 0.86652 0.90188 1.00221 1.21529 0.97496 0.97625 0.96852 1.21286 0.96475 0.92437 0.89719 0.93045 0.92166 0.95176 0.91119 0.88162 0.87753 0.93250 0.84595 0.85739 0.93273 0.87387 0.92960 0.90192 0.87040 0.85985 0.92159 0.88350 0.86263 0.92085 0.91020 0.93588 0.96408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.50 13.97 21.65 0.30 -59.20 16 2 C -0.03 -1.63 5.17 84.86 0.44 -1.19 16 3 Si 0.93 47.38 24.56 68.60 1.69 49.07 16 4 H -0.28 -13.39 6.44 99.48 0.64 -12.74 16 5 H -0.31 -16.02 7.11 99.48 0.71 -15.31 16 6 H -0.27 -13.54 7.11 99.48 0.71 -12.83 16 7 C -0.24 -13.35 9.97 84.03 0.84 -12.52 16 8 H 0.06 3.38 8.06 -2.91 -0.02 3.36 16 9 N -0.62 -27.81 2.68 -698.65 -1.87 -29.68 16 10 C 0.14 4.80 6.42 86.42 0.56 5.35 16 11 C -0.10 -2.50 5.31 30.57 0.16 -2.34 16 12 C -0.08 -1.99 0.83 -52.61 -0.04 -2.03 16 13 C 0.11 2.80 7.56 83.31 0.63 3.43 16 14 N -0.65 -15.55 3.46 -858.68 -2.97 -18.53 16 15 C 0.54 14.90 7.96 87.66 0.70 15.59 16 16 O -0.58 -21.29 16.19 10.75 0.17 -21.12 16 17 C -0.11 -2.26 5.61 29.85 0.17 -2.09 16 18 C 0.26 6.04 2.80 71.98 0.20 6.24 16 19 O -0.41 -10.25 9.77 -120.75 -1.18 -11.43 16 20 C 0.05 0.80 6.96 72.07 0.50 1.31 16 21 C -0.18 -2.21 6.35 30.77 0.20 -2.01 16 22 C 0.05 0.63 6.96 72.07 0.50 1.14 16 23 O -0.40 -8.08 10.54 -126.22 -1.33 -9.41 16 24 C 0.12 2.03 7.56 83.21 0.63 2.66 16 25 C -0.10 -3.03 5.25 30.57 0.16 -2.87 16 26 C 0.13 5.28 4.14 86.43 0.36 5.63 16 27 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 28 H 0.06 2.12 7.92 -2.39 -0.02 2.10 16 29 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.10 1.72 8.10 -2.39 -0.02 1.70 16 32 H 0.10 2.26 8.06 -2.39 -0.02 2.24 16 33 H 0.05 1.56 7.53 -2.39 -0.02 1.54 16 34 H 0.14 2.12 8.14 -2.38 -0.02 2.10 16 35 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.05 1.25 7.96 -2.39 -0.02 1.23 16 37 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.10 1.38 8.10 -2.39 -0.02 1.36 16 44 H 0.12 1.39 8.09 -2.39 -0.02 1.37 16 45 H 0.06 1.85 7.95 -2.39 -0.02 1.83 16 46 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 47 H 0.05 2.18 4.66 -2.39 -0.01 2.17 16 48 H 0.02 0.77 6.93 -2.39 -0.02 0.75 16 Total: -1.00 -76.93 371.92 1.67 -75.26 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 0.87 Total: 8.72 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: 5.99 Total: 16.31 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -4.54 Total: -107.40 kcal Atomic # 8 Polarization: -39.62 SS G_CDS: -2.34 Total: -41.96 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 1.69 Total: 49.07 kcal Total: -76.93 1.67 -75.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050494014.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.847 kcal (2) G-P(sol) polarization free energy of solvation -76.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds