Wall clock time and date at job start Tue Mar 31 2020 13:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00416 * 2 1 4 4 H 1.48500 * 109.47336 * 273.79612 * 3 2 1 5 5 H 1.48504 * 109.47111 * 33.79517 * 3 2 1 6 6 H 1.48499 * 109.47085 * 153.79391 * 3 2 1 7 7 C 1.38814 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99950 * 339.33566 * 7 2 1 9 9 N 1.36933 * 120.00314 * 159.32981 * 7 2 1 10 10 C 1.46891 * 120.46971 * 152.13052 * 9 7 2 11 11 C 1.53342 * 108.75414 * 124.43800 * 10 9 7 12 12 C 1.52663 * 109.11442 * 52.41877 * 11 10 9 13 13 C 1.53479 * 113.62109 * 170.87001 * 12 11 10 14 14 N 1.47664 * 85.98944 * 269.03236 * 13 12 11 15 15 C 1.34773 * 134.46044 * 155.66338 * 14 13 12 16 16 O 1.21284 * 120.00379 * 180.02562 * 15 14 13 17 17 C 1.50701 * 119.99674 * 0.02562 * 15 14 13 18 18 O 1.42905 * 109.46898 * 180.02562 * 17 15 14 19 19 C 1.42907 * 113.99636 * 180.02562 * 18 17 15 20 20 H 1.08996 * 110.43473 * 330.69371 * 19 18 17 21 21 C 1.54815 * 110.48176 * 208.15091 * 19 18 17 22 22 C 1.55232 * 101.98320 * 220.51615 * 21 19 18 23 23 O 1.44381 * 103.56284 * 36.88757 * 22 21 19 24 24 C 1.43744 * 106.97768 * 320.00513 * 23 22 21 25 25 C 1.47669 * 91.08646 * 335.68056 * 14 13 12 26 26 C 1.52674 * 113.18607 * 302.41014 * 12 11 10 27 27 C 1.46879 * 120.46840 * 332.11286 * 9 7 2 28 28 H 0.97006 * 119.99480 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.59083 * 4.65697 * 10 9 7 30 30 H 1.08998 * 109.58962 * 244.22146 * 10 9 7 31 31 H 1.08999 * 109.52933 * 292.52489 * 11 10 9 32 32 H 1.09000 * 109.52703 * 172.31005 * 11 10 9 33 33 H 1.08998 * 113.78865 * 23.29919 * 13 12 11 34 34 H 1.09006 * 113.78977 * 154.76353 * 13 12 11 35 35 H 1.09004 * 109.47229 * 299.99767 * 17 15 14 36 36 H 1.08994 * 109.47209 * 60.00244 * 17 15 14 37 37 H 1.08997 * 110.91190 * 338.63882 * 21 19 18 38 38 H 1.08997 * 110.90470 * 102.24945 * 21 19 18 39 39 H 1.08996 * 110.52029 * 278.38614 * 22 21 19 40 40 H 1.09005 * 110.77318 * 155.50375 * 22 21 19 41 41 H 1.09000 * 109.88164 * 267.09603 * 24 23 22 42 42 H 1.09001 * 110.00162 * 146.01145 * 24 23 22 43 43 H 1.09005 * 113.78852 * 270.05211 * 25 14 13 44 44 H 1.08995 * 113.89879 * 138.59703 * 25 14 13 45 45 H 1.08997 * 109.53182 * 177.47696 * 26 12 11 46 46 H 1.09000 * 109.52952 * 297.69799 * 26 12 11 47 47 H 1.09000 * 109.58765 * 355.34400 * 27 9 7 48 48 H 1.09005 * 109.59252 * 115.77579 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4176 2.0927 -1.3970 5 1 1.4902 2.6281 0.7788 6 1 3.5856 1.4181 0.6183 7 6 2.0102 -1.2022 -0.0005 8 1 1.5222 -2.1076 0.3291 9 7 3.3134 -1.2403 -0.4191 10 6 4.2344 -2.2581 0.1040 11 6 4.8392 -3.0287 -1.0757 12 6 5.4313 -2.0344 -2.0714 13 6 6.2586 -2.6954 -3.1824 14 7 7.4170 -2.5149 -2.2847 15 6 8.6104 -3.1262 -2.1490 16 8 9.3890 -2.7541 -1.2967 17 6 8.9774 -4.2721 -3.0563 18 8 10.2813 -4.7490 -2.7178 19 6 10.7279 -5.8415 -3.5235 20 1 9.8792 -6.4322 -3.8679 21 6 11.7200 -6.7282 -2.7321 22 6 12.7870 -7.0592 -3.8099 23 8 12.8845 -5.8391 -4.5757 24 6 11.5492 -5.3274 -4.7218 25 6 6.7437 -1.3963 -1.5948 26 6 4.4123 -1.0215 -2.5875 27 6 3.8102 -0.2643 -1.3979 28 1 -0.4850 0.8401 0.0004 29 1 3.6894 -2.9469 0.7495 30 1 5.0298 -1.7745 0.6710 31 1 4.0615 -3.6151 -1.5650 32 1 5.6240 -3.6927 -0.7132 33 1 5.9997 -3.7389 -3.3617 34 1 6.3156 -2.1063 -4.0978 35 1 8.2534 -5.0780 -2.9349 36 1 8.9721 -3.9318 -4.0917 37 1 12.1624 -6.1738 -1.9045 38 1 11.2314 -7.6345 -2.3743 39 1 12.4507 -7.8823 -4.4403 40 1 13.7438 -7.2987 -3.3459 41 1 11.1132 -5.6900 -5.6527 42 1 11.5653 -4.2375 -4.7200 43 1 6.9449 -0.4211 -2.0384 44 1 6.8693 -1.4054 -0.5121 45 1 4.9059 -0.3164 -3.2562 46 1 3.6208 -1.5429 -3.1259 47 1 2.9857 0.3604 -1.7417 48 1 4.5759 0.3592 -0.9361 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050521469.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:59 Heat of formation + Delta-G solvation = -55.330716 kcal Electronic energy + Delta-G solvation = -28086.610737 eV Core-core repulsion = 24144.098256 eV Total energy + Delta-G solvation = -3942.512481 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.87974 -40.06957 -38.63816 -37.12079 -36.14631 -32.57511 -31.89813 -31.00355 -30.52519 -29.44042 -28.54604 -26.84585 -25.81811 -23.96901 -23.19191 -22.96740 -21.77337 -21.15181 -19.49774 -18.21583 -17.80455 -17.37262 -16.81526 -16.51699 -16.29828 -16.06480 -15.76369 -15.31397 -15.14377 -15.01990 -14.24539 -13.97660 -13.79737 -13.61863 -13.38374 -13.16967 -13.09093 -12.75195 -12.64036 -12.40791 -12.23899 -12.15882 -11.89268 -11.87157 -11.77377 -11.54886 -11.21443 -10.86443 -10.63345 -10.53688 -10.39416 -10.12493 -10.00582 -9.96456 -9.88897 -9.60599 -9.42341 -8.74545 -8.63463 -7.00649 -5.98251 -3.34398 2.34748 2.52269 3.28304 3.35244 3.46918 3.48667 3.49301 4.00008 4.23644 4.37621 4.38247 4.47802 4.49753 4.67435 4.71335 4.78407 4.85566 4.86968 4.94809 5.03982 5.08196 5.22462 5.25821 5.26751 5.29816 5.33230 5.40393 5.41740 5.56314 5.63767 5.71911 5.79007 5.87290 5.97704 6.10740 6.23657 6.28110 6.33745 6.36701 6.56271 6.60888 6.62474 6.67363 6.86734 7.61497 7.93649 8.07194 8.29743 8.91241 9.68878 10.06094 11.17663 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.037878 B = 0.002267 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.040650 B =12348.258396 C =12477.244315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.882 3.118 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.260 4.260 8 H 0.085 0.915 9 N -0.605 5.605 10 C 0.149 3.851 11 C -0.109 4.109 12 C -0.076 4.076 13 C 0.102 3.898 14 N -0.641 5.641 15 C 0.534 3.466 16 O -0.524 6.524 17 C 0.048 3.952 18 O -0.347 6.347 19 C 0.053 3.947 20 H 0.080 0.920 21 C -0.153 4.153 22 C 0.047 3.953 23 O -0.373 6.373 24 C 0.024 3.976 25 C 0.118 3.882 26 C -0.120 4.120 27 C 0.127 3.873 28 H 0.262 0.738 29 H 0.065 0.935 30 H 0.023 0.977 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.063 0.937 40 H 0.098 0.902 41 H 0.065 0.935 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.058 0.942 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.156 -12.967 -11.649 25.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.712 3.288 4 H -0.217 1.217 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.388 4.388 8 H 0.103 0.897 9 N -0.328 5.328 10 C 0.023 3.977 11 C -0.148 4.148 12 C -0.077 4.077 13 C -0.021 4.021 14 N -0.378 5.378 15 C 0.322 3.678 16 O -0.399 6.399 17 C -0.032 4.032 18 O -0.265 6.265 19 C -0.005 4.005 20 H 0.098 0.902 21 C -0.191 4.191 22 C -0.030 4.030 23 O -0.291 6.291 24 C -0.053 4.053 25 C -0.003 4.003 26 C -0.160 4.160 27 C 0.001 3.999 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.041 0.959 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.081 0.919 40 H 0.116 0.884 41 H 0.083 0.917 42 H 0.112 0.888 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.077 0.923 46 H 0.092 0.908 47 H 0.092 0.908 48 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 19.932 -12.616 -11.058 26.052 hybrid contribution -0.012 0.817 -0.312 0.875 sum 19.921 -11.799 -11.371 25.794 Atomic orbital electron populations 1.69840 1.05752 1.26558 1.52913 1.25301 0.95230 0.97597 0.99471 0.86961 0.80188 0.84693 0.76931 1.21654 1.23181 1.19478 1.18915 0.84992 0.94704 1.40227 0.89743 1.44321 1.08596 1.34047 1.45834 1.20915 0.92480 0.91280 0.93006 1.21766 0.99279 0.96582 0.97194 1.21990 0.93568 0.96812 0.95327 1.23489 0.82212 1.01691 0.94714 1.49997 1.15073 1.35260 1.37459 1.19775 0.79806 0.83508 0.84718 1.90743 1.48487 1.65403 1.35292 1.22223 0.86391 0.96309 0.98276 1.88123 1.31097 1.49729 1.57572 1.23632 0.97356 0.88117 0.91444 0.90210 1.23276 0.96417 0.99698 0.99668 1.23601 0.99923 0.87732 0.91731 1.88914 1.26115 1.39296 1.74805 1.23749 0.83514 1.00943 0.97089 1.23312 0.87817 0.89870 0.99303 1.21967 0.97657 0.97298 0.99084 1.21328 0.97388 0.92058 0.89089 0.92769 0.91608 0.95888 0.91177 0.92531 0.90079 0.89482 0.90131 0.90373 0.88743 0.89256 0.91896 0.88364 0.91680 0.88805 0.89789 0.89753 0.92319 0.90843 0.90800 0.95641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.20 13.97 55.49 0.78 -26.42 16 2 C 0.02 0.65 5.23 -17.43 -0.09 0.55 16 3 Si 0.88 21.77 24.37 -169.99 -4.14 17.63 16 4 H -0.29 -6.81 6.65 56.52 0.38 -6.43 16 5 H -0.30 -7.72 7.11 56.52 0.40 -7.31 16 6 H -0.27 -6.56 6.64 56.52 0.38 -6.19 16 7 C -0.26 -6.98 10.01 -15.06 -0.15 -7.13 16 8 H 0.08 2.43 8.06 -52.48 -0.42 2.01 16 9 N -0.60 -13.49 2.73 -172.20 -0.47 -13.96 16 10 C 0.15 2.76 6.38 -3.65 -0.02 2.74 16 11 C -0.11 -1.60 5.21 -26.73 -0.14 -1.74 16 12 C -0.08 -1.01 0.77 -154.43 -0.12 -1.13 16 13 C 0.10 1.02 7.74 -3.16 -0.02 0.99 16 14 N -0.64 -8.08 3.44 -180.23 -0.62 -8.70 16 15 C 0.53 7.50 8.13 -10.99 -0.09 7.41 16 16 O -0.52 -9.84 17.23 -14.36 -0.25 -10.09 16 17 C 0.05 0.47 6.02 36.01 0.22 0.69 16 18 O -0.35 -4.08 9.49 -55.14 -0.52 -4.60 16 19 C 0.05 0.43 3.51 -25.20 -0.09 0.34 16 20 H 0.08 0.45 7.84 -51.93 -0.41 0.05 16 21 C -0.15 -1.10 6.92 -24.59 -0.17 -1.27 16 22 C 0.05 0.31 7.72 38.34 0.30 0.61 16 23 O -0.37 -3.72 11.52 -35.23 -0.41 -4.12 16 24 C 0.02 0.20 7.52 37.73 0.28 0.48 16 25 C 0.12 1.63 7.62 -3.14 -0.02 1.60 16 26 C -0.12 -1.81 5.26 -26.72 -0.14 -1.95 16 27 C 0.13 2.54 4.09 -3.66 -0.01 2.53 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.07 1.23 7.92 -51.93 -0.41 0.82 16 30 H 0.02 0.43 7.49 -51.93 -0.39 0.04 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 0.77 8.01 -51.93 -0.42 0.36 16 33 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 34 H 0.09 0.73 8.09 -51.93 -0.42 0.31 16 35 H 0.08 0.62 8.11 -51.93 -0.42 0.20 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.84 8.09 -51.93 -0.42 0.42 16 38 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 0.85 7.97 -51.93 -0.41 0.44 16 43 H 0.08 1.07 8.07 -51.93 -0.42 0.65 16 44 H 0.08 1.29 7.41 -51.93 -0.38 0.90 16 45 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 46 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 47 H 0.07 1.65 4.39 -51.93 -0.23 1.42 16 48 H 0.03 0.51 7.12 -51.93 -0.37 0.14 16 LS Contribution 375.38 15.07 5.66 5.66 Total: -1.00 -34.48 375.38 -8.37 -42.85 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -8.11 Total: -2.96 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -0.28 Total: 4.72 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: -0.32 Total: -49.09 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -1.18 Total: -18.81 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.14 Total: 17.63 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.48 -8.37 -42.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050521469.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.483 kcal (2) G-P(sol) polarization free energy of solvation -34.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds