Wall clock time and date at job start Tue Mar 31 2020 13:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00416 * 2 1 4 4 H 1.48500 * 109.47336 * 273.79612 * 3 2 1 5 5 H 1.48504 * 109.47111 * 33.79517 * 3 2 1 6 6 H 1.48499 * 109.47085 * 153.79391 * 3 2 1 7 7 C 1.38814 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99950 * 339.33566 * 7 2 1 9 9 N 1.36933 * 120.00314 * 159.32981 * 7 2 1 10 10 C 1.46891 * 120.46971 * 152.13052 * 9 7 2 11 11 C 1.53342 * 108.75414 * 124.43800 * 10 9 7 12 12 C 1.52663 * 109.11442 * 52.41877 * 11 10 9 13 13 C 1.53479 * 113.62109 * 170.87001 * 12 11 10 14 14 N 1.47664 * 85.98944 * 269.03236 * 13 12 11 15 15 C 1.34773 * 134.46044 * 155.66338 * 14 13 12 16 16 O 1.21284 * 120.00379 * 180.02562 * 15 14 13 17 17 C 1.50701 * 119.99674 * 0.02562 * 15 14 13 18 18 O 1.42905 * 109.46898 * 180.02562 * 17 15 14 19 19 C 1.42907 * 113.99636 * 180.02562 * 18 17 15 20 20 H 1.08996 * 110.43473 * 330.69371 * 19 18 17 21 21 C 1.54815 * 110.48176 * 208.15091 * 19 18 17 22 22 C 1.55232 * 101.98320 * 220.51615 * 21 19 18 23 23 O 1.44381 * 103.56284 * 36.88757 * 22 21 19 24 24 C 1.43744 * 106.97768 * 320.00513 * 23 22 21 25 25 C 1.47669 * 91.08646 * 335.68056 * 14 13 12 26 26 C 1.52674 * 113.18607 * 302.41014 * 12 11 10 27 27 C 1.46879 * 120.46840 * 332.11286 * 9 7 2 28 28 H 0.97006 * 119.99480 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.59083 * 4.65697 * 10 9 7 30 30 H 1.08998 * 109.58962 * 244.22146 * 10 9 7 31 31 H 1.08999 * 109.52933 * 292.52489 * 11 10 9 32 32 H 1.09000 * 109.52703 * 172.31005 * 11 10 9 33 33 H 1.08998 * 113.78865 * 23.29919 * 13 12 11 34 34 H 1.09006 * 113.78977 * 154.76353 * 13 12 11 35 35 H 1.09004 * 109.47229 * 299.99767 * 17 15 14 36 36 H 1.08994 * 109.47209 * 60.00244 * 17 15 14 37 37 H 1.08997 * 110.91190 * 338.63882 * 21 19 18 38 38 H 1.08997 * 110.90470 * 102.24945 * 21 19 18 39 39 H 1.08996 * 110.52029 * 278.38614 * 22 21 19 40 40 H 1.09005 * 110.77318 * 155.50375 * 22 21 19 41 41 H 1.09000 * 109.88164 * 267.09603 * 24 23 22 42 42 H 1.09001 * 110.00162 * 146.01145 * 24 23 22 43 43 H 1.09005 * 113.78852 * 270.05211 * 25 14 13 44 44 H 1.08995 * 113.89879 * 138.59703 * 25 14 13 45 45 H 1.08997 * 109.53182 * 177.47696 * 26 12 11 46 46 H 1.09000 * 109.52952 * 297.69799 * 26 12 11 47 47 H 1.09000 * 109.58765 * 355.34400 * 27 9 7 48 48 H 1.09005 * 109.59252 * 115.77579 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4176 2.0927 -1.3970 5 1 1.4902 2.6281 0.7788 6 1 3.5856 1.4181 0.6183 7 6 2.0102 -1.2022 -0.0005 8 1 1.5222 -2.1076 0.3291 9 7 3.3134 -1.2403 -0.4191 10 6 4.2344 -2.2581 0.1040 11 6 4.8392 -3.0287 -1.0757 12 6 5.4313 -2.0344 -2.0714 13 6 6.2586 -2.6954 -3.1824 14 7 7.4170 -2.5149 -2.2847 15 6 8.6104 -3.1262 -2.1490 16 8 9.3890 -2.7541 -1.2967 17 6 8.9774 -4.2721 -3.0563 18 8 10.2813 -4.7490 -2.7178 19 6 10.7279 -5.8415 -3.5235 20 1 9.8792 -6.4322 -3.8679 21 6 11.7200 -6.7282 -2.7321 22 6 12.7870 -7.0592 -3.8099 23 8 12.8845 -5.8391 -4.5757 24 6 11.5492 -5.3274 -4.7218 25 6 6.7437 -1.3963 -1.5948 26 6 4.4123 -1.0215 -2.5875 27 6 3.8102 -0.2643 -1.3979 28 1 -0.4850 0.8401 0.0004 29 1 3.6894 -2.9469 0.7495 30 1 5.0298 -1.7745 0.6710 31 1 4.0615 -3.6151 -1.5650 32 1 5.6240 -3.6927 -0.7132 33 1 5.9997 -3.7389 -3.3617 34 1 6.3156 -2.1063 -4.0978 35 1 8.2534 -5.0780 -2.9349 36 1 8.9721 -3.9318 -4.0917 37 1 12.1624 -6.1738 -1.9045 38 1 11.2314 -7.6345 -2.3743 39 1 12.4507 -7.8823 -4.4403 40 1 13.7438 -7.2987 -3.3459 41 1 11.1132 -5.6900 -5.6527 42 1 11.5653 -4.2375 -4.7200 43 1 6.9449 -0.4211 -2.0384 44 1 6.8693 -1.4054 -0.5121 45 1 4.9059 -0.3164 -3.2562 46 1 3.6208 -1.5429 -3.1259 47 1 2.9857 0.3604 -1.7417 48 1 4.5759 0.3592 -0.9361 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050521469.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:59 Heat of formation + Delta-G solvation = -79.932209 kcal Electronic energy + Delta-G solvation = -28087.677538 eV Core-core repulsion = 24144.098256 eV Total energy + Delta-G solvation = -3943.579282 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.92044 -40.70893 -39.68228 -38.01688 -37.55982 -34.34374 -32.69084 -32.33506 -31.97349 -30.19671 -29.42875 -27.96810 -26.78174 -25.60660 -24.40165 -23.70953 -22.71201 -22.33841 -20.54909 -19.53280 -18.59295 -18.39118 -18.00445 -17.40125 -17.24853 -17.12782 -16.95432 -16.42810 -16.05234 -15.84332 -15.74962 -15.27019 -15.09393 -14.80342 -14.62941 -14.31431 -14.10506 -13.82377 -13.73700 -13.50203 -13.27059 -13.20511 -13.12854 -12.91403 -12.76092 -12.50785 -12.40159 -12.22493 -12.11312 -11.73629 -11.62224 -11.45427 -11.37333 -11.26666 -10.99272 -10.80468 -10.56413 -10.48876 -9.73851 -8.88393 -8.14505 -5.45473 1.29800 1.43665 1.47227 1.51553 1.56012 2.42752 2.65498 2.96355 3.09326 3.31347 3.35235 3.43187 3.52621 3.80812 3.85938 3.95384 4.00625 4.10223 4.12860 4.19630 4.25199 4.36115 4.38580 4.40879 4.53375 4.54609 4.58179 4.62676 4.71848 4.72198 4.78464 4.80128 4.81031 4.85189 4.88936 5.00303 5.03104 5.03930 5.17441 5.27713 5.32397 5.51025 5.80330 5.90578 6.07901 6.15345 6.66810 6.95869 7.07725 7.66134 8.05835 9.05434 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.037878 B = 0.002267 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.040650 B =12348.258396 C =12477.244315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.036 4.036 3 Si 0.944 3.056 4 H -0.269 1.269 5 H -0.316 1.316 6 H -0.266 1.266 7 C -0.244 4.244 8 H 0.051 0.949 9 N -0.618 5.618 10 C 0.143 3.857 11 C -0.096 4.096 12 C -0.079 4.079 13 C 0.120 3.880 14 N -0.638 5.638 15 C 0.525 3.475 16 O -0.586 6.586 17 C 0.053 3.947 18 O -0.384 6.384 19 C 0.050 3.950 20 H 0.113 0.887 21 C -0.155 4.155 22 C 0.045 3.955 23 O -0.405 6.405 24 C 0.022 3.978 25 C 0.110 3.890 26 C -0.108 4.108 27 C 0.118 3.882 28 H 0.260 0.740 29 H 0.053 0.947 30 H 0.023 0.977 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.067 0.933 38 H 0.111 0.889 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.096 0.904 44 H 0.059 0.941 45 H 0.092 0.908 46 H 0.072 0.928 47 H 0.049 0.951 48 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.746 -14.331 -14.633 29.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.230 4.230 3 Si 0.774 3.226 4 H -0.195 1.195 5 H -0.245 1.245 6 H -0.191 1.191 7 C -0.374 4.374 8 H 0.069 0.931 9 N -0.343 5.343 10 C 0.018 3.982 11 C -0.134 4.134 12 C -0.080 4.080 13 C -0.001 4.001 14 N -0.374 5.374 15 C 0.316 3.684 16 O -0.466 6.466 17 C -0.026 4.026 18 O -0.303 6.303 19 C -0.008 4.008 20 H 0.131 0.869 21 C -0.193 4.193 22 C -0.031 4.031 23 O -0.325 6.325 24 C -0.055 4.055 25 C -0.012 4.012 26 C -0.147 4.147 27 C -0.007 4.007 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.129 0.871 34 H 0.136 0.864 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.086 0.914 38 H 0.130 0.870 39 H 0.105 0.895 40 H 0.122 0.878 41 H 0.109 0.891 42 H 0.096 0.904 43 H 0.114 0.886 44 H 0.078 0.922 45 H 0.111 0.889 46 H 0.090 0.910 47 H 0.068 0.932 48 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 21.548 -14.005 -14.091 29.309 hybrid contribution -0.494 1.162 0.687 1.437 sum 21.054 -12.844 -13.404 28.069 Atomic orbital electron populations 1.69966 1.07367 1.27082 1.55913 1.25896 0.95802 1.00797 1.00536 0.85943 0.78561 0.80458 0.77660 1.19539 1.24538 1.19069 1.18860 0.86798 0.93373 1.38344 0.93078 1.44450 1.07541 1.35307 1.46956 1.21051 0.91701 0.90615 0.94794 1.21574 0.99466 0.96537 0.95870 1.21896 0.92955 0.96475 0.96639 1.23612 0.78885 1.03709 0.93882 1.50047 1.15275 1.34485 1.37568 1.20627 0.79285 0.84093 0.84398 1.90714 1.50457 1.67380 1.38061 1.22329 0.86455 0.95479 0.98353 1.88093 1.32129 1.51144 1.58943 1.23866 0.98417 0.87519 0.90975 0.86910 1.23316 0.96673 1.00227 0.99036 1.23786 1.00306 0.87312 0.91686 1.88872 1.27429 1.40783 1.75380 1.23843 0.83103 1.00170 0.98406 1.23334 0.88474 0.91145 0.98293 1.21823 0.98036 0.97785 0.97095 1.21412 0.96700 0.92063 0.90504 0.93059 0.92878 0.95934 0.90936 0.91177 0.87123 0.86417 0.87125 0.87270 0.91373 0.87043 0.89504 0.87808 0.89111 0.90444 0.88581 0.92214 0.88950 0.90960 0.93235 0.95369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.24 13.97 21.65 0.30 -58.93 16 2 C -0.04 -2.05 5.23 84.86 0.44 -1.60 16 3 Si 0.94 45.78 24.37 68.60 1.67 47.46 16 4 H -0.27 -12.04 6.65 99.48 0.66 -11.38 16 5 H -0.32 -15.84 7.11 99.48 0.71 -15.13 16 6 H -0.27 -12.52 6.64 99.48 0.66 -11.85 16 7 C -0.24 -13.43 10.01 84.03 0.84 -12.59 16 8 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 9 N -0.62 -27.45 2.73 -698.72 -1.91 -29.35 16 10 C 0.14 5.26 6.38 86.42 0.55 5.81 16 11 C -0.10 -2.58 5.21 30.60 0.16 -2.42 16 12 C -0.08 -1.81 0.77 -52.04 -0.04 -1.85 16 13 C 0.12 1.73 7.74 86.31 0.67 2.40 16 14 N -0.64 -13.88 3.44 -842.52 -2.90 -16.78 16 15 C 0.53 13.56 8.13 87.66 0.71 14.27 16 16 O -0.59 -21.99 17.23 15.99 0.28 -21.71 16 17 C 0.05 0.85 6.02 71.24 0.43 1.27 16 18 O -0.38 -8.26 9.49 -129.94 -1.23 -9.49 16 19 C 0.05 0.66 3.51 31.59 0.11 0.77 16 20 H 0.11 0.73 7.84 -2.39 -0.02 0.71 16 21 C -0.15 -1.96 6.92 31.98 0.22 -1.74 16 22 C 0.04 0.51 7.72 72.75 0.56 1.07 16 23 O -0.40 -7.55 11.52 -148.98 -1.72 -9.26 16 24 C 0.02 0.31 7.52 72.35 0.54 0.85 16 25 C 0.11 2.74 7.62 86.32 0.66 3.40 16 26 C -0.11 -2.86 5.26 30.60 0.16 -2.70 16 27 C 0.12 4.52 4.09 86.42 0.35 4.88 16 28 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 29 H 0.05 2.03 7.92 -2.39 -0.02 2.01 16 30 H 0.02 0.83 7.49 -2.39 -0.02 0.82 16 31 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.07 1.73 8.01 -2.39 -0.02 1.71 16 33 H 0.11 1.06 8.09 -2.39 -0.02 1.04 16 34 H 0.12 1.13 8.09 -2.38 -0.02 1.11 16 35 H 0.11 1.10 8.11 -2.38 -0.02 1.08 16 36 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.07 1.21 8.09 -2.39 -0.02 1.19 16 38 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.08 1.31 7.97 -2.39 -0.02 1.29 16 43 H 0.10 2.17 8.07 -2.38 -0.02 2.15 16 44 H 0.06 1.78 7.41 -2.39 -0.02 1.77 16 45 H 0.09 1.88 8.12 -2.39 -0.02 1.86 16 46 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.05 2.14 4.39 -2.39 -0.01 2.13 16 48 H 0.03 1.07 7.12 -2.38 -0.02 1.05 16 Total: -1.00 -80.66 375.38 1.71 -78.95 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 0.84 Total: 7.29 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: 6.38 Total: 11.83 kcal Atomic # 7 Polarization: -100.56 SS G_CDS: -4.51 Total: -105.06 kcal Atomic # 8 Polarization: -37.79 SS G_CDS: -2.67 Total: -40.46 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.67 Total: 47.46 kcal Total: -80.66 1.71 -78.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050521469.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.983 kcal (2) G-P(sol) polarization free energy of solvation -80.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds