Wall clock time and date at job start Tue Mar 31 2020 14:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 119.99863 * 2 1 4 4 H 1.48503 * 109.47331 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46861 * 119.99890 * 3 2 1 6 6 H 1.48499 * 109.47296 * 240.00433 * 3 2 1 7 7 C 1.38807 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99712 * 154.88937 * 7 2 1 9 9 N 1.36931 * 120.00112 * 334.88682 * 7 2 1 10 10 C 1.47159 * 120.98110 * 327.00728 * 9 7 2 11 11 C 1.53296 * 108.37873 * 129.44183 * 10 9 7 12 12 O 1.42958 * 109.22457 * 52.30958 * 11 10 9 13 13 C 1.42962 * 114.16300 * 297.41306 * 12 11 10 14 14 C 1.47154 * 120.98294 * 146.72910 * 9 7 2 15 15 H 1.08995 * 109.67916 * 110.83300 * 14 9 7 16 16 C 1.53000 * 109.68041 * 350.28042 * 14 9 7 17 17 N 1.46500 * 109.46913 * 65.93701 * 16 14 9 18 18 C 1.34780 * 119.99957 * 183.38862 * 17 16 14 19 19 O 1.21285 * 119.99385 * 0.02562 * 18 17 16 20 20 C 1.50697 * 120.00191 * 180.02562 * 18 17 16 21 21 H 1.09000 * 110.45762 * 57.39636 * 20 18 17 22 22 C 1.54506 * 110.51064 * 294.64551 * 20 18 17 23 23 C 1.54486 * 104.06341 * 241.35317 * 22 20 18 24 24 O 1.44431 * 104.79892 * 336.02363 * 23 22 20 25 25 C 1.44417 * 105.27610 * 40.51283 * 24 23 22 26 26 H 1.09001 * 110.37698 * 78.32088 * 25 24 23 27 27 C 1.53004 * 110.46706 * 200.60831 * 25 24 23 28 28 C 1.53008 * 117.49448 * 4.18139 * 27 25 24 29 29 C 1.53001 * 117.49502 * 295.52630 * 27 25 24 30 30 H 0.96995 * 119.99895 * 174.33210 * 1 2 3 31 31 H 1.08996 * 109.68203 * 249.16706 * 10 9 7 32 32 H 1.08998 * 109.67965 * 9.68610 * 10 9 7 33 33 H 1.09003 * 109.50697 * 172.22809 * 11 10 9 34 34 H 1.08997 * 109.51722 * 292.32228 * 11 10 9 35 35 H 1.09004 * 109.51446 * 182.50954 * 13 12 11 36 36 H 1.09007 * 109.51452 * 302.65550 * 13 12 11 37 37 H 1.09000 * 109.46922 * 185.93472 * 16 14 9 38 38 H 1.08996 * 109.46786 * 305.93851 * 16 14 9 39 39 H 0.97003 * 120.00098 * 3.39544 * 17 16 14 40 40 H 1.09002 * 110.51467 * 359.97438 * 22 20 18 41 41 H 1.09001 * 110.50927 * 122.71157 * 22 20 18 42 42 H 1.08996 * 110.37645 * 217.19248 * 23 22 20 43 43 H 1.08999 * 110.46528 * 94.89758 * 23 22 20 44 44 H 1.08995 * 115.55088 * 149.84769 * 27 25 24 45 45 H 1.08999 * 117.49537 * 0.02562 * 28 27 25 46 46 H 1.08997 * 117.49794 * 145.02313 * 28 27 25 47 47 H 1.09003 * 117.49604 * 214.97511 * 29 27 25 48 48 H 1.08998 * 117.50136 * 359.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1039 1.6964 1.2126 6 1 3.1039 1.6966 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0138 -1.2461 -0.3975 9 7 1.4227 -2.3322 0.5022 10 6 0.4771 -2.2578 1.6273 11 6 -0.7906 -3.0304 1.2451 12 8 -0.4283 -4.3417 0.8060 13 6 0.3897 -4.3611 -0.3663 14 6 1.7136 -3.6561 -0.0704 15 1 2.2891 -4.2461 0.6428 16 6 2.5098 -3.4932 -1.3667 17 7 3.8271 -2.9285 -1.0630 18 6 4.6803 -2.6323 -2.0634 19 8 4.3573 -2.8328 -3.2151 20 6 6.0355 -2.0520 -1.7509 21 1 6.5908 -2.7161 -1.0886 22 6 5.8913 -0.6494 -1.1192 23 6 6.6144 0.2862 -2.1134 24 8 7.5460 -0.5676 -2.8126 25 6 6.8286 -1.7979 -3.0520 26 1 6.1476 -1.6822 -3.8952 27 6 7.8065 -2.9455 -3.3123 28 6 9.3008 -2.6435 -3.1820 29 6 8.6807 -2.8583 -4.5650 30 1 -0.4850 -0.8359 -0.0830 31 1 0.9260 -2.7047 2.5143 32 1 0.2264 -1.2162 1.8279 33 1 -1.4467 -3.1052 2.1123 34 1 -1.3080 -2.5064 0.4414 35 1 0.5829 -5.3933 -0.6585 36 1 -0.1228 -3.8425 -1.1766 37 1 2.6325 -4.4661 -1.8425 38 1 1.9743 -2.8242 -2.0403 39 1 4.0853 -2.7679 -0.1418 40 1 4.8398 -0.3754 -1.0333 41 1 6.3764 -0.6182 -0.1436 42 1 7.1479 1.0707 -1.5768 43 1 5.9016 0.7231 -2.8128 44 1 7.4642 -3.9337 -3.0052 45 1 9.5871 -1.6274 -2.9105 46 1 9.9415 -3.4332 -2.7897 47 1 8.9138 -3.7892 -5.0819 48 1 8.5589 -1.9836 -5.2038 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051037380.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:37 Heat of formation + Delta-G solvation = -70.806514 kcal Electronic energy + Delta-G solvation = -29616.345486 eV Core-core repulsion = 25673.161924 eV Total energy + Delta-G solvation = -3943.183562 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.43334 -38.98287 -38.17303 -36.43397 -35.44283 -33.95436 -32.54021 -31.35807 -30.35689 -29.14384 -27.32476 -25.83009 -23.82271 -23.11992 -22.44263 -22.23787 -21.73811 -20.40040 -20.05661 -19.62355 -17.73011 -16.71206 -16.53232 -16.02213 -15.63554 -15.36410 -15.23602 -15.10470 -14.87797 -14.54553 -14.10762 -14.07861 -13.77143 -13.63460 -13.42920 -13.12686 -13.02022 -12.44831 -12.11106 -11.75411 -11.70674 -11.48944 -11.42339 -11.28438 -11.11417 -10.92164 -10.86738 -10.59485 -10.53856 -10.27450 -10.23607 -10.17629 -10.03301 -9.71230 -9.66592 -9.36810 -9.06746 -8.47965 -8.43494 -6.95922 -6.17286 -3.46508 2.96011 3.35034 3.37993 3.47710 3.55555 3.79888 3.89550 4.35445 4.45632 4.47343 4.66276 4.88067 4.94209 4.95729 4.99170 5.01698 5.23016 5.31729 5.35503 5.41378 5.50718 5.55020 5.63914 5.64354 5.74781 5.76558 5.87408 5.90757 5.96579 5.99463 6.01808 6.05254 6.06496 6.12146 6.14145 6.20236 6.23074 6.37231 6.59530 6.81037 6.84896 6.88572 6.93196 7.72626 7.88523 7.93979 8.42756 8.59948 8.90681 9.64894 10.11505 11.04942 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014868 B = 0.004297 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.782738 B = 6515.321528 C = 7958.459786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.019 4.019 3 Si 1.053 2.947 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.358 4.358 8 H 0.076 0.924 9 N -0.594 5.594 10 C 0.111 3.889 11 C 0.043 3.957 12 O -0.392 6.392 13 C 0.052 3.948 14 C 0.124 3.876 15 H 0.041 0.959 16 C 0.139 3.861 17 N -0.698 5.698 18 C 0.518 3.482 19 O -0.550 6.550 20 C -0.135 4.135 21 H 0.106 0.894 22 C -0.151 4.151 23 C 0.047 3.953 24 O -0.371 6.371 25 C 0.120 3.880 26 H 0.093 0.907 27 C -0.149 4.149 28 C -0.168 4.168 29 C -0.174 4.174 30 H 0.270 0.730 31 H 0.022 0.978 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.052 0.948 35 H 0.082 0.918 36 H 0.048 0.952 37 H 0.056 0.944 38 H 0.077 0.923 39 H 0.406 0.594 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.063 0.937 44 H 0.112 0.888 45 H 0.105 0.895 46 H 0.089 0.911 47 H 0.092 0.908 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.904 -4.982 -1.257 12.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.223 4.223 3 Si 0.882 3.118 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.487 4.487 8 H 0.093 0.907 9 N -0.321 5.321 10 C -0.015 4.015 11 C -0.035 4.035 12 O -0.310 6.310 13 C -0.028 4.028 14 C 0.017 3.983 15 H 0.059 0.941 16 C 0.015 3.985 17 N -0.348 5.348 18 C 0.304 3.696 19 O -0.428 6.428 20 C -0.157 4.157 21 H 0.124 0.876 22 C -0.189 4.189 23 C -0.030 4.030 24 O -0.290 6.290 25 C 0.063 3.937 26 H 0.111 0.889 27 C -0.167 4.167 28 C -0.205 4.205 29 C -0.211 4.211 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.096 0.904 39 H 0.242 0.758 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.112 0.888 43 H 0.081 0.919 44 H 0.130 0.870 45 H 0.123 0.877 46 H 0.107 0.893 47 H 0.110 0.890 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.654 -3.572 -1.976 12.348 hybrid contribution -0.098 -1.376 0.369 1.428 sum 11.556 -4.948 -1.607 12.673 Atomic orbital electron populations 1.70806 1.06828 1.30484 1.46760 1.25867 0.96524 1.01611 0.98249 0.83706 0.75256 0.76539 0.76281 1.20992 1.21735 1.21704 1.20260 0.98396 0.87553 1.42504 0.90696 1.44315 1.52639 1.01456 1.33664 1.21621 0.89273 1.01007 0.89565 1.23123 0.97698 0.83657 0.98996 1.87799 1.69613 1.28448 1.45174 1.22855 0.92279 0.99870 0.87758 1.21482 0.94107 0.89579 0.93113 0.94096 1.21186 0.82757 0.97284 0.97305 1.45967 1.15775 1.63350 1.09717 1.20160 0.85897 0.78135 0.85457 1.90661 1.77550 1.54260 1.20354 1.22620 0.94833 0.98750 0.99471 0.87592 1.23019 1.03588 0.92508 0.99804 1.23390 0.92178 0.93608 0.93796 1.89056 1.36676 1.25604 1.77638 1.22319 0.91456 0.83859 0.96115 0.88938 1.22264 0.92207 0.98490 1.03778 1.22892 0.94467 1.03290 0.99809 1.22928 1.04138 1.03060 0.91005 0.91849 0.96003 0.89119 0.90094 0.92963 0.90034 0.93368 0.92582 0.90431 0.75803 0.88829 0.89632 0.88790 0.91916 0.87028 0.87701 0.89287 0.89001 0.88668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.21 12.33 55.49 0.68 -24.53 16 2 C -0.02 -0.49 4.74 -17.43 -0.08 -0.57 16 3 Si 1.05 23.34 29.99 -169.99 -5.10 18.24 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.36 -8.62 7.95 -15.06 -0.12 -8.74 16 8 H 0.08 1.71 3.90 -52.48 -0.20 1.51 16 9 N -0.59 -13.19 2.82 -164.54 -0.46 -13.65 16 10 C 0.11 2.40 5.66 -3.53 -0.02 2.38 16 11 C 0.04 0.85 6.83 37.31 0.25 1.11 16 12 O -0.39 -7.68 10.74 -35.23 -0.38 -8.05 16 13 C 0.05 0.94 6.27 37.09 0.23 1.17 16 14 C 0.12 2.35 3.13 -67.64 -0.21 2.13 16 15 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 16 C 0.14 2.54 4.54 -4.04 -0.02 2.52 16 17 N -0.70 -11.89 3.37 -60.29 -0.20 -12.09 16 18 C 0.52 8.88 6.94 -10.99 -0.08 8.81 16 19 O -0.55 -11.19 15.45 5.55 0.09 -11.10 16 20 C -0.14 -1.88 3.05 -90.21 -0.27 -2.16 16 21 H 0.11 1.27 7.87 -51.93 -0.41 0.86 16 22 C -0.15 -2.08 6.72 -25.16 -0.17 -2.25 16 23 C 0.05 0.62 7.63 37.94 0.29 0.91 16 24 O -0.37 -5.21 9.79 -35.23 -0.34 -5.56 16 25 C 0.12 1.71 2.99 -25.95 -0.08 1.63 16 26 H 0.09 1.53 6.90 -51.93 -0.36 1.17 16 27 C -0.15 -1.83 5.60 -90.61 -0.51 -2.34 16 28 C -0.17 -1.81 9.90 -26.69 -0.26 -2.07 16 29 C -0.17 -1.92 10.25 -26.69 -0.27 -2.20 16 30 H 0.27 7.44 5.62 -40.82 -0.23 7.21 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 2.19 5.95 -51.93 -0.31 1.88 16 33 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 34 H 0.05 1.12 6.74 -51.93 -0.35 0.77 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.05 0.93 8.13 -51.93 -0.42 0.51 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 1.70 7.79 -51.93 -0.40 1.29 16 39 H 0.41 6.59 7.61 -40.82 -0.31 6.28 16 40 H 0.09 1.52 6.67 -51.93 -0.35 1.18 16 41 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.11 1.32 8.13 -51.93 -0.42 0.90 16 45 H 0.10 1.21 7.07 -51.93 -0.37 0.85 16 46 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 369.94 15.07 5.57 5.57 Total: -1.00 -29.20 369.94 -9.04 -38.24 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -7.58 Total: 12.60 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -1.32 Total: 0.34 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: 0.02 Total: -50.28 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.64 Total: -24.72 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.10 Total: 18.24 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.20 -9.04 -38.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051037380.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.570 kcal (2) G-P(sol) polarization free energy of solvation -29.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds