Wall clock time and date at job start Tue Mar 31 2020 13:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00014 * 2 1 4 4 H 1.48500 * 109.47304 * 270.00068 * 3 2 1 5 5 H 1.48501 * 109.47131 * 30.00254 * 3 2 1 6 6 H 1.48501 * 109.47233 * 150.00013 * 3 2 1 7 7 C 1.38815 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99692 * 169.15242 * 7 2 1 9 9 N 1.36930 * 119.99778 * 349.15299 * 7 2 1 10 10 C 1.47157 * 120.98625 * 327.54839 * 9 7 2 11 11 C 1.53293 * 108.38623 * 230.51717 * 10 9 7 12 12 O 1.42966 * 109.21975 * 307.69249 * 11 10 9 13 13 C 1.42962 * 114.16726 * 62.58522 * 12 11 10 14 14 C 1.47159 * 120.98401 * 147.52627 * 9 7 2 15 15 H 1.09008 * 109.67821 * 249.21256 * 14 9 7 16 16 C 1.52996 * 109.68030 * 9.75943 * 14 9 7 17 17 N 1.46503 * 109.47295 * 300.09843 * 16 14 9 18 18 C 1.34778 * 120.00224 * 180.02562 * 17 16 14 19 19 O 1.21283 * 119.99878 * 359.97438 * 18 17 16 20 20 C 1.50696 * 119.99995 * 179.97438 * 18 17 16 21 21 H 1.09000 * 115.55761 * 88.16232 * 20 18 17 22 22 C 1.53061 * 117.50808 * 302.44567 * 20 18 17 23 23 C 1.52725 * 117.50524 * 233.86046 * 20 18 17 24 24 C 1.53255 * 117.82503 * 359.60771 * 23 20 18 25 25 C 1.53322 * 108.48618 * 265.30170 * 24 23 20 26 26 O 1.42880 * 109.32273 * 306.03730 * 25 24 23 27 27 C 1.42868 * 114.52786 * 64.36399 * 26 25 24 28 28 C 1.53250 * 117.82951 * 215.32995 * 23 20 18 29 29 H 0.96995 * 120.00371 * 359.97438 * 1 2 3 30 30 H 1.08991 * 109.68555 * 110.78719 * 10 9 7 31 31 H 1.09005 * 109.67567 * 350.23243 * 10 9 7 32 32 H 1.09004 * 109.51529 * 67.61534 * 11 10 9 33 33 H 1.08997 * 109.51167 * 187.72177 * 11 10 9 34 34 H 1.08996 * 109.51698 * 57.33701 * 13 12 11 35 35 H 1.08996 * 109.51287 * 177.44414 * 13 12 11 36 36 H 1.08998 * 109.47143 * 60.09259 * 16 14 9 37 37 H 1.08998 * 109.47228 * 180.09775 * 16 14 9 38 38 H 0.97001 * 120.00083 * 359.97438 * 17 16 14 39 39 H 1.09003 * 117.50485 * 0.02562 * 22 20 18 40 40 H 1.09001 * 117.50637 * 145.03574 * 22 20 18 41 41 H 1.08993 * 109.63209 * 24.99773 * 24 23 20 42 42 H 1.08994 * 109.63251 * 145.60443 * 24 23 20 43 43 H 1.08996 * 109.49767 * 186.08571 * 25 24 23 44 44 H 1.09001 * 109.49794 * 65.99283 * 25 24 23 45 45 H 1.08996 * 109.49423 * 175.68842 * 27 26 25 46 46 H 1.08995 * 109.49731 * 55.59247 * 27 26 25 47 47 H 1.09002 * 109.63564 * 214.39958 * 28 23 20 48 48 H 1.09004 * 109.62903 * 334.79764 * 28 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0758 -1.2103 -0.1766 9 7 1.3440 -2.3775 0.2221 10 6 0.1720 -2.4274 1.1106 11 6 0.3757 -3.5662 2.1163 12 8 0.6877 -4.7687 1.4087 13 6 1.9040 -4.7085 0.6599 14 6 1.7785 -3.6281 -0.4204 15 1 1.0414 -3.9348 -1.1626 16 6 3.1343 -3.4158 -1.0969 17 7 3.0156 -2.3632 -2.1089 18 6 4.0914 -2.0041 -2.8371 19 8 5.1578 -2.5521 -2.6542 20 6 3.9692 -0.9217 -3.8784 21 1 4.1320 0.0951 -3.5212 22 6 2.9367 -1.1236 -4.9902 23 6 4.4281 -1.2527 -5.2970 24 6 4.9875 -2.6553 -5.5589 25 6 6.5148 -2.6003 -5.4354 26 8 7.0223 -1.5789 -6.2960 27 6 6.6111 -0.2548 -5.9517 28 6 5.0908 -0.1376 -6.1131 29 1 -0.4850 0.8400 0.0004 30 1 -0.7268 -2.6132 0.5226 31 1 0.0741 -1.4810 1.6426 32 1 1.1966 -3.3159 2.7884 33 1 -0.5373 -3.7094 2.6941 34 1 2.7303 -4.4623 1.3266 35 1 2.0905 -5.6741 0.1901 36 1 3.8707 -3.1201 -0.3497 37 1 3.4519 -4.3434 -1.5730 38 1 2.1626 -1.9252 -2.2554 39 1 2.3456 -2.0392 -4.9680 40 1 2.4201 -0.2396 -5.3641 41 1 4.5856 -3.3529 -4.8243 42 1 4.7127 -2.9775 -6.5632 43 1 6.9379 -3.5625 -5.7239 44 1 6.7886 -2.3765 -4.4044 45 1 7.1030 0.4615 -6.6096 46 1 6.8842 -0.0465 -4.9172 47 1 4.8247 -0.2456 -7.1646 48 1 4.7544 0.8328 -5.7479 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051273341.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:17 Heat of formation + Delta-G solvation = -77.746170 kcal Electronic energy + Delta-G solvation = -29562.078218 eV Core-core repulsion = 25618.593730 eV Total energy + Delta-G solvation = -3943.484488 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.34800 -38.88312 -38.15952 -36.29226 -35.29325 -33.57725 -31.62069 -31.20326 -30.56649 -29.95953 -27.28999 -25.91999 -23.83487 -23.67270 -23.48301 -22.65173 -21.69257 -19.95790 -19.71004 -18.62643 -17.05198 -16.31709 -16.19782 -15.96881 -15.91544 -15.65753 -15.11445 -14.88700 -14.72155 -14.56927 -14.14786 -14.00429 -13.72743 -13.33950 -13.25096 -13.03729 -12.83076 -12.62150 -12.34421 -12.09988 -11.81498 -11.61151 -11.31155 -11.12089 -11.04896 -10.92600 -10.79620 -10.67510 -10.46085 -10.34378 -10.32046 -10.11990 -9.90978 -9.69527 -9.37474 -9.19976 -8.97498 -8.72164 -8.29026 -6.76135 -5.96336 -3.46934 3.10441 3.21532 3.31201 3.34101 3.49721 3.84678 3.92009 4.28954 4.48578 4.60678 4.71482 4.83190 4.87858 5.05335 5.09456 5.21351 5.25601 5.40956 5.53994 5.55428 5.58589 5.64975 5.68022 5.69456 5.77737 5.80430 5.84310 5.89632 5.98204 6.02711 6.08525 6.11105 6.11873 6.19111 6.20431 6.22970 6.28673 6.48070 6.71617 7.01445 7.09036 7.26958 7.42857 7.65477 7.82195 8.20431 8.25325 8.80613 9.00258 9.60380 10.20617 11.10177 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014437 B = 0.004250 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.952667 B = 6587.406557 C = 7892.448075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.012 3.988 3 Si 0.895 3.105 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.256 4.256 8 H 0.072 0.928 9 N -0.591 5.591 10 C 0.145 3.855 11 C 0.035 3.965 12 O -0.392 6.392 13 C 0.056 3.944 14 C 0.125 3.875 15 H 0.041 0.959 16 C 0.136 3.864 17 N -0.688 5.688 18 C 0.539 3.461 19 O -0.559 6.559 20 C -0.168 4.168 21 H 0.127 0.873 22 C -0.154 4.154 23 C -0.101 4.101 24 C -0.112 4.112 25 C 0.064 3.936 26 O -0.389 6.389 27 C 0.064 3.936 28 C -0.116 4.116 29 H 0.256 0.744 30 H 0.030 0.970 31 H 0.089 0.911 32 H 0.040 0.960 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.417 0.583 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.090 0.910 46 H 0.052 0.948 47 H 0.077 0.923 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.522 -3.034 -8.350 10.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.188 4.188 3 Si 0.724 3.276 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.090 0.910 9 N -0.316 5.316 10 C 0.020 3.980 11 C -0.043 4.043 12 O -0.311 6.311 13 C -0.023 4.023 14 C 0.018 3.982 15 H 0.058 0.942 16 C 0.012 3.988 17 N -0.339 5.339 18 C 0.324 3.676 19 O -0.439 6.439 20 C -0.189 4.189 21 H 0.145 0.855 22 C -0.191 4.191 23 C -0.102 4.102 24 C -0.149 4.149 25 C -0.013 4.013 26 O -0.308 6.308 27 C -0.013 4.013 28 C -0.154 4.154 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.107 0.893 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.256 0.744 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.106 0.894 44 H 0.088 0.912 45 H 0.109 0.891 46 H 0.071 0.929 47 H 0.095 0.905 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.132 -3.476 -8.342 10.921 hybrid contribution -0.281 1.666 0.385 1.733 sum 5.851 -1.810 -7.957 10.041 Atomic orbital electron populations 1.69975 1.05191 1.25729 1.53222 1.25165 0.95267 0.98200 1.00186 0.86415 0.79356 0.83845 0.77953 1.21123 1.21461 1.20422 1.19183 0.91252 0.83266 1.44831 0.91046 1.44069 1.33614 1.03288 1.50667 1.21385 0.89235 0.96519 0.90907 1.23348 0.99275 0.86693 0.94997 1.87802 1.41610 1.36555 1.65115 1.22864 0.86996 0.98640 0.93801 1.21431 0.93868 0.89349 0.93565 0.94178 1.21153 0.97600 0.89627 0.90458 1.46053 1.13333 1.38421 1.36127 1.19461 0.84051 0.82656 0.81420 1.90611 1.27954 1.55796 1.69500 1.22364 1.06488 1.00254 0.89803 0.85476 1.23108 0.91305 1.03932 1.00766 1.21409 0.96573 0.96856 0.95330 1.21735 0.96925 0.94274 1.01974 1.22622 0.92598 0.90841 0.95201 1.87803 1.72531 1.15298 1.55159 1.22539 0.93555 0.84576 1.00582 1.21811 0.96220 0.97158 1.00164 0.93415 0.95209 0.89253 0.94117 0.90221 0.93524 0.89938 0.91582 0.92427 0.74445 0.88165 0.87949 0.90423 0.91204 0.89410 0.91205 0.89142 0.92942 0.90471 0.90652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.63 11.24 55.49 0.62 -23.01 16 2 C 0.01 0.29 5.05 -17.43 -0.09 0.21 16 3 Si 0.89 20.27 29.57 -169.99 -5.03 15.24 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.26 -6.17 6.95 -15.06 -0.10 -6.28 16 8 H 0.07 1.77 5.87 -52.49 -0.31 1.46 16 9 N -0.59 -13.27 3.02 -164.30 -0.50 -13.76 16 10 C 0.14 3.23 5.37 -3.53 -0.02 3.21 16 11 C 0.03 0.66 6.99 37.31 0.26 0.92 16 12 O -0.39 -7.51 10.74 -35.23 -0.38 -7.88 16 13 C 0.06 0.97 6.29 37.31 0.23 1.21 16 14 C 0.12 2.38 3.22 -67.42 -0.22 2.16 16 15 H 0.04 0.80 8.14 -51.92 -0.42 0.38 16 16 C 0.14 2.44 4.46 -4.04 -0.02 2.42 16 17 N -0.69 -12.51 3.76 -60.30 -0.23 -12.74 16 18 C 0.54 9.56 6.25 -10.99 -0.07 9.49 16 19 O -0.56 -11.00 14.51 5.56 0.08 -10.92 16 20 C -0.17 -2.55 5.82 -91.88 -0.53 -3.08 16 21 H 0.13 1.94 8.14 -51.93 -0.42 1.52 16 22 C -0.15 -1.98 9.72 -26.80 -0.26 -2.24 16 23 C -0.10 -1.31 2.03 -154.49 -0.31 -1.62 16 24 C -0.11 -1.47 5.21 -26.43 -0.14 -1.61 16 25 C 0.06 0.86 6.75 37.32 0.25 1.11 16 26 O -0.39 -5.32 10.69 -35.23 -0.38 -5.70 16 27 C 0.06 0.75 6.85 37.33 0.26 1.01 16 28 C -0.12 -1.29 5.92 -26.43 -0.16 -1.45 16 29 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 2.19 6.44 -51.93 -0.33 1.85 16 32 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.07 1.30 7.60 -51.93 -0.39 0.90 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.42 8.08 7.25 -40.82 -0.30 7.78 16 39 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 40 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.08 1.13 6.44 -51.93 -0.33 0.79 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.07 1.08 6.86 -51.93 -0.36 0.73 16 45 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 48 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 LS Contribution 370.67 15.07 5.59 5.59 Total: -1.00 -27.95 370.67 -9.05 -37.00 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -7.92 Total: 10.73 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -0.92 Total: 5.46 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: -0.10 Total: -49.51 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.67 Total: -24.50 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.03 Total: 15.24 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -27.95 -9.05 -37.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051273341.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.745 kcal (2) G-P(sol) polarization free energy of solvation -27.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds