Wall clock time and date at job start Tue Mar 31 2020 13:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00014 * 2 1 4 4 H 1.48500 * 109.47304 * 270.00068 * 3 2 1 5 5 H 1.48501 * 109.47131 * 30.00254 * 3 2 1 6 6 H 1.48501 * 109.47233 * 150.00013 * 3 2 1 7 7 C 1.38815 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99692 * 169.15242 * 7 2 1 9 9 N 1.36930 * 119.99778 * 349.15299 * 7 2 1 10 10 C 1.47157 * 120.98625 * 327.54839 * 9 7 2 11 11 C 1.53293 * 108.38623 * 230.51717 * 10 9 7 12 12 O 1.42966 * 109.21975 * 307.69249 * 11 10 9 13 13 C 1.42962 * 114.16726 * 62.58522 * 12 11 10 14 14 C 1.47159 * 120.98401 * 147.52627 * 9 7 2 15 15 H 1.09008 * 109.67821 * 249.21256 * 14 9 7 16 16 C 1.52996 * 109.68030 * 9.75943 * 14 9 7 17 17 N 1.46503 * 109.47295 * 300.09843 * 16 14 9 18 18 C 1.34778 * 120.00224 * 180.02562 * 17 16 14 19 19 O 1.21283 * 119.99878 * 359.97438 * 18 17 16 20 20 C 1.50696 * 119.99995 * 179.97438 * 18 17 16 21 21 H 1.09000 * 115.55761 * 88.16232 * 20 18 17 22 22 C 1.53061 * 117.50808 * 302.44567 * 20 18 17 23 23 C 1.52725 * 117.50524 * 233.86046 * 20 18 17 24 24 C 1.53255 * 117.82503 * 359.60771 * 23 20 18 25 25 C 1.53322 * 108.48618 * 265.30170 * 24 23 20 26 26 O 1.42880 * 109.32273 * 306.03730 * 25 24 23 27 27 C 1.42868 * 114.52786 * 64.36399 * 26 25 24 28 28 C 1.53250 * 117.82951 * 215.32995 * 23 20 18 29 29 H 0.96995 * 120.00371 * 359.97438 * 1 2 3 30 30 H 1.08991 * 109.68555 * 110.78719 * 10 9 7 31 31 H 1.09005 * 109.67567 * 350.23243 * 10 9 7 32 32 H 1.09004 * 109.51529 * 67.61534 * 11 10 9 33 33 H 1.08997 * 109.51167 * 187.72177 * 11 10 9 34 34 H 1.08996 * 109.51698 * 57.33701 * 13 12 11 35 35 H 1.08996 * 109.51287 * 177.44414 * 13 12 11 36 36 H 1.08998 * 109.47143 * 60.09259 * 16 14 9 37 37 H 1.08998 * 109.47228 * 180.09775 * 16 14 9 38 38 H 0.97001 * 120.00083 * 359.97438 * 17 16 14 39 39 H 1.09003 * 117.50485 * 0.02562 * 22 20 18 40 40 H 1.09001 * 117.50637 * 145.03574 * 22 20 18 41 41 H 1.08993 * 109.63209 * 24.99773 * 24 23 20 42 42 H 1.08994 * 109.63251 * 145.60443 * 24 23 20 43 43 H 1.08996 * 109.49767 * 186.08571 * 25 24 23 44 44 H 1.09001 * 109.49794 * 65.99283 * 25 24 23 45 45 H 1.08996 * 109.49423 * 175.68842 * 27 26 25 46 46 H 1.08995 * 109.49731 * 55.59247 * 27 26 25 47 47 H 1.09002 * 109.63564 * 214.39958 * 28 23 20 48 48 H 1.09004 * 109.62903 * 334.79764 * 28 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0758 -1.2103 -0.1766 9 7 1.3440 -2.3775 0.2221 10 6 0.1720 -2.4274 1.1106 11 6 0.3757 -3.5662 2.1163 12 8 0.6877 -4.7687 1.4087 13 6 1.9040 -4.7085 0.6599 14 6 1.7785 -3.6281 -0.4204 15 1 1.0414 -3.9348 -1.1626 16 6 3.1343 -3.4158 -1.0969 17 7 3.0156 -2.3632 -2.1089 18 6 4.0914 -2.0041 -2.8371 19 8 5.1578 -2.5521 -2.6542 20 6 3.9692 -0.9217 -3.8784 21 1 4.1320 0.0951 -3.5212 22 6 2.9367 -1.1236 -4.9902 23 6 4.4281 -1.2527 -5.2970 24 6 4.9875 -2.6553 -5.5589 25 6 6.5148 -2.6003 -5.4354 26 8 7.0223 -1.5789 -6.2960 27 6 6.6111 -0.2548 -5.9517 28 6 5.0908 -0.1376 -6.1131 29 1 -0.4850 0.8400 0.0004 30 1 -0.7268 -2.6132 0.5226 31 1 0.0741 -1.4810 1.6426 32 1 1.1966 -3.3159 2.7884 33 1 -0.5373 -3.7094 2.6941 34 1 2.7303 -4.4623 1.3266 35 1 2.0905 -5.6741 0.1901 36 1 3.8707 -3.1201 -0.3497 37 1 3.4519 -4.3434 -1.5730 38 1 2.1626 -1.9252 -2.2554 39 1 2.3456 -2.0392 -4.9680 40 1 2.4201 -0.2396 -5.3641 41 1 4.5856 -3.3529 -4.8243 42 1 4.7127 -2.9775 -6.5632 43 1 6.9379 -3.5625 -5.7239 44 1 6.7886 -2.3765 -4.4044 45 1 7.1030 0.4615 -6.6096 46 1 6.8842 -0.0465 -4.9172 47 1 4.8247 -0.2456 -7.1646 48 1 4.7544 0.8328 -5.7479 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051273341.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:16 Heat of formation + Delta-G solvation = -95.227005 kcal Electronic energy + Delta-G solvation = -29562.836244 eV Core-core repulsion = 25618.593730 eV Total energy + Delta-G solvation = -3944.242514 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.55083 -40.31799 -39.50938 -37.44011 -36.85787 -35.25576 -33.27461 -32.20073 -32.16879 -31.06490 -29.02453 -27.36178 -25.29648 -25.00275 -24.70641 -23.68982 -23.23676 -21.43928 -21.17411 -19.81939 -18.64435 -17.80237 -17.50960 -17.36232 -17.07540 -16.95854 -16.52196 -16.27789 -16.11868 -15.90684 -15.69748 -15.42711 -15.16928 -14.80847 -14.62740 -14.33096 -14.18199 -13.88711 -13.51207 -13.43559 -13.13637 -13.05467 -12.88137 -12.72232 -12.52042 -12.28105 -12.17640 -12.11504 -12.01780 -11.87824 -11.66487 -11.39466 -11.31327 -10.99293 -10.79370 -10.58184 -10.54463 -10.21870 -9.81723 -8.60557 -7.87686 -5.39616 1.38938 1.45381 1.50911 1.71403 2.25122 2.44700 2.66838 2.94566 3.02300 3.28768 3.43279 3.53634 3.69671 3.71963 3.87163 4.02745 4.09417 4.13245 4.22714 4.31454 4.36246 4.46423 4.51380 4.54016 4.59081 4.63192 4.64880 4.69097 4.72189 4.74986 4.79617 4.83418 4.93200 4.99038 5.02417 5.09354 5.10751 5.19991 5.23824 5.28727 5.57952 5.63859 5.69522 6.27017 6.28871 6.37052 6.73912 7.10436 7.36432 7.75614 8.32964 9.16712 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014437 B = 0.004250 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.952667 B = 6587.406557 C = 7892.448075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.028 4.028 3 Si 0.942 3.058 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.285 1.285 7 C -0.242 4.242 8 H 0.065 0.935 9 N -0.604 5.604 10 C 0.151 3.849 11 C 0.046 3.954 12 O -0.397 6.397 13 C 0.057 3.943 14 C 0.126 3.874 15 H 0.036 0.964 16 C 0.143 3.857 17 N -0.692 5.692 18 C 0.538 3.462 19 O -0.581 6.581 20 C -0.192 4.192 21 H 0.125 0.875 22 C -0.141 4.141 23 C -0.093 4.093 24 C -0.109 4.109 25 C 0.067 3.933 26 O -0.398 6.398 27 C 0.058 3.942 28 C -0.112 4.112 29 H 0.250 0.750 30 H 0.007 0.993 31 H 0.063 0.937 32 H 0.043 0.957 33 H 0.105 0.895 34 H 0.048 0.952 35 H 0.117 0.883 36 H 0.048 0.952 37 H 0.079 0.921 38 H 0.411 0.589 39 H 0.100 0.900 40 H 0.119 0.881 41 H 0.060 0.940 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.044 0.956 45 H 0.116 0.884 46 H 0.039 0.961 47 H 0.093 0.907 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.013 -3.464 -9.602 11.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.225 4.225 3 Si 0.771 3.229 4 H -0.202 1.202 5 H -0.222 1.222 6 H -0.211 1.211 7 C -0.372 4.372 8 H 0.083 0.917 9 N -0.330 5.330 10 C 0.025 3.975 11 C -0.032 4.032 12 O -0.316 6.316 13 C -0.021 4.021 14 C 0.020 3.980 15 H 0.054 0.946 16 C 0.018 3.982 17 N -0.341 5.341 18 C 0.325 3.675 19 O -0.462 6.462 20 C -0.213 4.213 21 H 0.143 0.857 22 C -0.177 4.177 23 C -0.093 4.093 24 C -0.147 4.147 25 C -0.010 4.010 26 O -0.317 6.317 27 C -0.018 4.018 28 C -0.150 4.150 29 H 0.060 0.940 30 H 0.025 0.975 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.123 0.877 34 H 0.066 0.934 35 H 0.135 0.865 36 H 0.066 0.934 37 H 0.097 0.903 38 H 0.249 0.751 39 H 0.118 0.882 40 H 0.138 0.862 41 H 0.079 0.921 42 H 0.104 0.896 43 H 0.119 0.881 44 H 0.062 0.938 45 H 0.134 0.866 46 H 0.058 0.942 47 H 0.111 0.889 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.640 -3.924 -9.599 12.314 hybrid contribution -0.389 1.743 0.775 1.947 sum 6.250 -2.180 -8.824 11.031 Atomic orbital electron populations 1.70091 1.06130 1.25672 1.55081 1.25617 0.95703 1.00242 1.00972 0.85680 0.77866 0.81312 0.78059 1.20170 1.22234 1.21074 1.19195 0.90926 0.83991 1.43091 0.91711 1.44270 1.33417 1.04038 1.51322 1.21209 0.88459 0.96693 0.91143 1.23216 1.00599 0.85394 0.93985 1.87805 1.42372 1.36185 1.65214 1.22987 0.86408 0.99592 0.93124 1.21547 0.94031 0.88383 0.94026 0.94616 1.21088 0.96388 0.90502 0.90175 1.46085 1.13224 1.38551 1.36287 1.19883 0.83359 0.82773 0.81481 1.90595 1.28632 1.56774 1.70232 1.22336 1.09642 0.99077 0.90252 0.85728 1.23193 0.91274 1.04621 0.98660 1.21548 0.96793 0.97417 0.93564 1.21708 0.96549 0.94137 1.02298 1.22557 0.92987 0.91565 0.93881 1.87792 1.72850 1.16037 1.55053 1.22726 0.94323 0.84182 1.00569 1.21851 0.95485 0.96940 1.00697 0.94030 0.97459 0.91887 0.93883 0.87745 0.93379 0.86482 0.93406 0.90313 0.75144 0.88185 0.86234 0.92086 0.89574 0.88125 0.93771 0.86586 0.94239 0.88866 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.54 11.24 21.65 0.24 -49.30 16 2 C -0.03 -1.43 5.05 84.86 0.43 -1.00 16 3 Si 0.94 41.95 29.57 68.60 2.03 43.98 16 4 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.30 -13.45 7.11 99.48 0.71 -12.75 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.24 -11.74 6.95 84.04 0.58 -11.16 16 8 H 0.07 3.23 5.87 -2.91 -0.02 3.21 16 9 N -0.60 -27.19 3.02 -673.71 -2.04 -29.23 16 10 C 0.15 6.75 5.37 86.35 0.46 7.21 16 11 C 0.05 1.68 6.99 72.08 0.50 2.18 16 12 O -0.40 -14.39 10.74 -148.98 -1.60 -15.99 16 13 C 0.06 1.87 6.29 72.08 0.45 2.32 16 14 C 0.13 4.71 3.22 44.96 0.14 4.85 16 15 H 0.04 1.39 8.14 -2.38 -0.02 1.38 16 16 C 0.14 5.04 4.46 86.38 0.38 5.42 16 17 N -0.69 -25.05 3.76 -463.06 -1.74 -26.79 16 18 C 0.54 19.05 6.25 87.66 0.55 19.60 16 19 O -0.58 -23.00 14.51 -3.04 -0.04 -23.05 16 20 C -0.19 -5.68 5.82 -11.61 -0.07 -5.75 16 21 H 0.12 3.73 8.14 -2.39 -0.02 3.71 16 22 C -0.14 -3.36 9.72 30.55 0.30 -3.07 16 23 C -0.09 -2.25 2.03 -52.17 -0.11 -2.35 16 24 C -0.11 -2.74 5.21 30.79 0.16 -2.58 16 25 C 0.07 1.75 6.75 72.09 0.49 2.23 16 26 O -0.40 -10.26 10.69 -148.98 -1.59 -11.85 16 27 C 0.06 1.25 6.85 72.09 0.49 1.74 16 28 C -0.11 -2.22 5.92 30.79 0.18 -2.04 16 29 H 0.25 13.22 8.31 -92.71 -0.77 12.45 16 30 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.06 3.15 6.44 -2.38 -0.02 3.14 16 32 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 34 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 36 H 0.05 1.87 7.60 -2.39 -0.02 1.85 16 37 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.41 15.97 7.25 -92.71 -0.67 15.30 16 39 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.06 1.73 6.44 -2.39 -0.02 1.72 16 42 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 45 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.09 1.54 8.08 -2.38 -0.02 1.52 16 Total: -1.00 -59.98 370.67 0.50 -59.49 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: 0.28 Total: 35.12 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: 4.96 Total: 17.62 kcal Atomic # 7 Polarization: -101.78 SS G_CDS: -3.54 Total: -105.32 kcal Atomic # 8 Polarization: -47.65 SS G_CDS: -3.24 Total: -50.89 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -59.98 0.50 -59.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051273341.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.740 kcal (2) G-P(sol) polarization free energy of solvation -59.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds