Wall clock time and date at job start Tue Mar 31 2020 13:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99818 * 2 1 4 4 H 1.48497 * 109.46938 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46817 * 299.99537 * 3 2 1 6 6 H 1.48492 * 109.47445 * 59.99640 * 3 2 1 7 7 C 1.38816 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99747 * 195.72884 * 7 2 1 9 9 N 1.36936 * 119.99915 * 15.72318 * 7 2 1 10 10 C 1.44580 * 118.64184 * 206.54048 * 9 7 2 11 11 C 1.54863 * 109.57847 * 270.71385 * 10 9 7 12 12 C 1.47093 * 110.32676 * 288.74806 * 11 10 9 13 13 C 1.52568 * 114.32330 * 62.79899 * 12 11 10 14 14 H 1.08998 * 109.49023 * 34.95827 * 13 12 11 15 15 N 1.46508 * 109.49015 * 155.00386 * 13 12 11 16 16 C 1.34769 * 119.99802 * 204.99578 * 15 13 12 17 17 O 1.21601 * 120.00479 * 0.02562 * 16 15 13 18 18 C 1.47432 * 119.99824 * 179.97438 * 16 15 13 19 19 C 1.41297 * 126.41328 * 359.69521 * 18 16 15 20 20 N 1.30444 * 108.02263 * 179.87566 * 19 18 16 21 21 N 1.39936 * 108.89921 * 0.38157 * 20 19 18 22 22 C 1.46493 * 125.75853 * 179.77084 * 21 20 19 23 23 C 1.52999 * 109.47430 * 304.98125 * 22 21 20 24 24 F 1.39901 * 109.47596 * 179.97438 * 23 22 21 25 25 C 1.34261 * 108.49009 * 359.75803 * 21 20 19 26 26 C 1.50887 * 109.36073 * 274.99155 * 13 12 11 27 27 C 1.47575 * 118.62379 * 26.49652 * 9 7 2 28 28 H 0.97000 * 120.00099 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.44790 * 150.69070 * 10 9 7 30 30 H 1.08998 * 109.44891 * 30.74188 * 10 9 7 31 31 H 1.09003 * 109.32825 * 49.00950 * 11 10 9 32 32 H 1.09002 * 109.33018 * 168.65688 * 11 10 9 33 33 H 1.08991 * 108.51651 * 184.05491 * 12 11 10 34 34 H 1.09000 * 108.50994 * 301.54903 * 12 11 10 35 35 H 0.96997 * 119.99495 * 25.00175 * 15 13 12 36 36 H 1.08001 * 125.98521 * 359.97438 * 19 18 16 37 37 H 1.09005 * 109.47147 * 64.97622 * 22 21 20 38 38 H 1.09004 * 109.47721 * 184.97959 * 22 21 20 39 39 H 1.09007 * 109.46981 * 300.00154 * 23 22 21 40 40 H 1.08998 * 109.47183 * 59.99167 * 23 22 21 41 41 H 1.08007 * 126.29248 * 180.02562 * 25 21 20 42 42 H 1.08999 * 109.36765 * 212.07738 * 26 13 12 43 43 H 1.09004 * 109.36623 * 331.81915 * 26 13 12 44 44 H 1.08999 * 108.95234 * 17.19623 * 27 9 7 45 45 H 1.08999 * 108.89335 * 258.50631 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0599 -1.2195 0.2541 9 7 1.3640 -2.3660 -0.3203 10 6 1.8686 -3.6098 0.2172 11 6 2.9232 -4.2028 -0.7494 12 6 2.2727 -4.7071 -1.9685 13 6 1.5656 -3.6354 -2.7926 14 1 2.1251 -2.7019 -2.7321 15 7 1.4852 -4.0673 -4.1903 16 6 1.3826 -3.1516 -5.1737 17 8 1.3572 -1.9668 -4.9011 18 6 1.3023 -3.5862 -6.5802 19 6 1.3269 -4.9189 -7.0489 20 7 1.2313 -4.8911 -8.3496 21 7 1.1512 -3.5588 -8.7698 22 6 1.0381 -3.1042 -10.1578 23 6 2.1894 -3.6861 -10.9804 24 9 2.0812 -3.2525 -12.3062 25 6 1.1950 -2.7672 -7.6862 26 6 0.1737 -3.4241 -2.2497 27 6 0.1808 -2.2984 -1.1996 28 1 -0.4850 0.8400 -0.0004 29 1 1.0457 -4.3151 0.3336 30 1 2.3288 -3.4254 1.1879 31 1 3.6422 -3.4288 -1.0179 32 1 3.4441 -5.0233 -0.2557 33 1 3.0292 -5.1813 -2.5936 34 1 1.5411 -5.4629 -1.6830 35 1 1.5058 -5.0124 -4.4077 36 1 1.4086 -5.8053 -6.4373 37 1 0.0883 -3.4401 -10.5739 38 1 1.0836 -2.0155 -10.1886 39 1 3.1393 -3.3503 -10.5643 40 1 2.1440 -4.7747 -10.9497 41 1 1.1534 -1.6879 -7.6808 42 1 -0.4954 -3.1526 -3.0662 43 1 -0.1772 -4.3462 -1.7862 44 1 0.1751 -1.3364 -1.7121 45 1 -0.7182 -2.3788 -0.5885 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052513198.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:29 Heat of formation + Delta-G solvation = -10.908271 kcal Electronic energy + Delta-G solvation = -27592.466609 eV Core-core repulsion = 23560.712876 eV Total energy + Delta-G solvation = -4031.753733 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.79327 -42.43204 -40.67055 -38.99064 -36.24190 -35.28738 -34.39249 -32.68196 -32.24290 -31.43112 -30.01538 -27.76539 -25.82874 -25.12145 -24.72616 -23.62442 -21.85561 -21.50969 -21.06161 -20.78984 -19.00759 -18.51836 -17.51380 -17.40894 -17.24323 -16.72860 -16.64015 -16.21831 -16.10341 -15.79576 -15.65825 -15.31599 -15.03149 -14.84860 -14.74057 -14.26394 -14.01022 -13.93821 -13.71412 -13.56620 -13.17400 -12.98091 -12.76767 -12.65648 -12.45871 -12.27190 -12.04933 -11.98774 -11.80045 -11.70539 -11.45164 -11.34110 -11.30056 -10.81677 -10.65024 -10.41091 -10.08404 -9.67132 -8.60968 -7.82821 -5.27798 0.46963 1.15149 1.20047 1.42219 1.46256 1.54570 2.37279 2.52193 2.52811 3.14169 3.31697 3.56300 3.72709 3.73036 3.77507 3.89046 3.96692 4.10772 4.15110 4.16527 4.23527 4.44536 4.50369 4.52516 4.53690 4.71926 4.75526 4.76292 4.91548 4.99310 5.08391 5.22734 5.28407 5.30967 5.37659 5.42190 5.58087 5.63889 5.70467 5.73138 5.77831 5.82432 6.43381 6.44609 6.77474 7.21981 7.46479 8.00526 8.38165 9.22182 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.016479 B = 0.002810 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.761232 B = 9963.394609 C =11035.331062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.052 4.052 3 Si 0.956 3.044 4 H -0.266 1.266 5 H -0.298 1.298 6 H -0.288 1.288 7 C -0.257 4.257 8 H 0.065 0.935 9 N -0.604 5.604 10 C 0.147 3.853 11 C -0.132 4.132 12 C -0.103 4.103 13 C 0.166 3.834 14 H 0.049 0.951 15 N -0.706 5.706 16 C 0.584 3.416 17 O -0.597 6.597 18 C -0.307 4.307 19 C 0.097 3.903 20 N -0.313 5.313 21 N -0.360 5.360 22 C 0.097 3.903 23 C 0.058 3.942 24 F -0.216 7.216 25 C 0.132 3.868 26 C -0.131 4.131 27 C 0.195 3.805 28 H 0.245 0.755 29 H 0.048 0.952 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.413 0.587 36 H 0.223 0.777 37 H 0.111 0.889 38 H 0.134 0.866 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.200 0.800 42 H 0.047 0.953 43 H 0.074 0.926 44 H 0.028 0.972 45 H -0.005 1.005 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.683 -14.760 -19.724 24.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.786 3.214 4 H -0.190 1.190 5 H -0.226 1.226 6 H -0.215 1.215 7 C -0.387 4.387 8 H 0.083 0.917 9 N -0.327 5.327 10 C 0.021 3.979 11 C -0.173 4.173 12 C -0.141 4.141 13 C 0.061 3.939 14 H 0.067 0.933 15 N -0.357 5.357 16 C 0.373 3.627 17 O -0.478 6.478 18 C -0.322 4.322 19 C -0.091 4.091 20 N -0.133 5.133 21 N -0.138 5.138 22 C -0.024 4.024 23 C 0.002 3.998 24 F -0.198 7.198 25 C -0.019 4.019 26 C -0.171 4.171 27 C 0.069 3.931 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.250 0.750 36 H 0.239 0.761 37 H 0.129 0.871 38 H 0.152 0.848 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.216 0.784 42 H 0.066 0.934 43 H 0.093 0.907 44 H 0.046 0.954 45 H 0.013 0.987 Dipole moment (debyes) X Y Z Total from point charges 3.495 -14.503 -20.783 25.583 hybrid contribution 0.018 1.727 0.837 1.920 sum 3.513 -12.776 -19.946 23.946 Atomic orbital electron populations 1.70220 1.06525 1.25268 1.56209 1.25725 0.96007 1.01328 1.01676 0.85357 0.78874 0.80702 0.76512 1.18999 1.22584 1.21534 1.19504 0.92499 0.86361 1.40360 0.91740 1.43853 1.32282 1.02797 1.53722 1.20965 0.95279 0.86964 0.94723 1.21291 0.98757 1.00181 0.97036 1.20520 1.00406 0.96773 0.96417 1.20138 0.95775 0.98436 0.79552 0.93253 1.45777 1.74401 1.10011 1.05538 1.17712 0.75015 0.85034 0.84961 1.90837 1.52970 1.19145 1.84894 1.20217 1.24530 0.94678 0.92760 1.24531 0.95469 0.97387 0.91730 1.77107 1.25529 0.96777 1.13846 1.48414 1.54636 1.04121 1.06667 1.22580 1.01448 1.02699 0.75648 1.22127 0.99444 1.01509 0.76679 1.92789 1.97471 1.91928 1.37577 1.23264 0.94141 0.98971 0.85557 1.22235 0.97027 0.99690 0.98122 1.20590 0.87481 0.95504 0.89496 0.94533 0.93324 0.94407 0.94493 0.89211 0.90092 0.90098 0.74968 0.76094 0.87065 0.84834 0.89475 0.89089 0.78355 0.93423 0.90710 0.95362 0.98692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.49 11.01 21.65 0.24 -58.25 16 2 C -0.05 -3.10 4.87 84.86 0.41 -2.69 16 3 Si 0.96 48.01 29.58 68.60 2.03 50.04 16 4 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.30 -15.32 7.11 99.48 0.71 -14.61 16 6 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 7 C -0.26 -14.62 9.44 84.03 0.79 -13.83 16 8 H 0.06 3.60 7.88 -2.91 -0.02 3.57 16 9 N -0.60 -30.69 2.27 -698.44 -1.58 -32.27 16 10 C 0.15 5.84 5.66 87.37 0.49 6.33 16 11 C -0.13 -4.14 5.74 29.39 0.17 -3.98 16 12 C -0.10 -2.76 4.69 28.61 0.13 -2.62 16 13 C 0.17 5.72 2.06 44.16 0.09 5.81 16 14 H 0.05 2.29 6.91 -2.39 -0.02 2.27 16 15 N -0.71 -19.09 4.92 -449.77 -2.21 -21.30 16 16 C 0.58 18.69 7.63 86.67 0.66 19.36 16 17 O -0.60 -26.26 16.56 -4.03 -0.07 -26.33 16 18 C -0.31 -7.18 6.13 -20.15 -0.12 -7.30 16 19 C 0.10 1.66 11.50 85.65 0.99 2.65 16 20 N -0.31 -5.69 12.33 -56.27 -0.69 -6.38 16 21 N -0.36 -5.78 3.65 -346.30 -1.26 -7.04 16 22 C 0.10 0.91 6.94 86.38 0.60 1.51 16 23 C 0.06 0.57 7.73 71.98 0.56 1.13 16 24 F -0.22 -2.96 17.36 44.97 0.78 -2.18 16 25 C 0.13 2.65 11.25 84.28 0.95 3.59 16 26 C -0.13 -5.07 5.39 30.23 0.16 -4.91 16 27 C 0.20 10.02 4.67 86.49 0.40 10.42 16 28 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 29 H 0.05 1.77 8.07 -2.39 -0.02 1.75 16 30 H 0.04 1.54 7.99 -2.39 -0.02 1.52 16 31 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.08 1.70 8.04 -2.39 -0.02 1.68 16 34 H 0.08 1.80 7.36 -2.39 -0.02 1.79 16 35 H 0.41 7.20 7.56 -92.71 -0.70 6.50 16 36 H 0.22 2.03 7.50 -2.91 -0.02 2.01 16 37 H 0.11 0.86 8.14 -2.38 -0.02 0.85 16 38 H 0.13 0.69 8.06 -2.38 -0.02 0.67 16 39 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 40 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.20 3.47 8.06 -2.91 -0.02 3.45 16 42 H 0.05 1.91 7.85 -2.39 -0.02 1.89 16 43 H 0.07 2.46 7.32 -2.39 -0.02 2.44 16 44 H 0.03 1.71 6.33 -2.39 -0.02 1.69 16 45 H 0.00 -0.28 8.03 -2.39 -0.02 -0.30 16 Total: -1.00 -80.93 368.67 3.82 -77.12 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.30 Total: 11.13 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: 6.29 Total: 15.47 kcal Atomic # 7 Polarization: -119.73 SS G_CDS: -5.52 Total: -125.25 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.07 Total: -26.33 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.78 Total: -2.18 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 2.03 Total: 50.04 kcal Total: -80.93 3.82 -77.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052513198.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.208 kcal (2) G-P(sol) polarization free energy of solvation -80.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds