Wall clock time and date at job start Tue Mar 31 2020 14:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30374 * 125.96530 * 2 1 4 4 N 1.39919 * 109.02280 * 180.02562 * 3 2 1 5 5 C 1.46501 * 125.74637 * 179.97438 * 4 3 2 6 6 C 1.34420 * 108.51185 * 359.73217 * 4 3 2 7 7 F 1.35102 * 126.34249 * 180.28400 * 6 4 3 8 8 C 1.38505 * 107.30972 * 0.42551 * 6 4 3 9 9 C 1.47169 * 126.45234 * 179.83557 * 8 6 4 10 10 O 1.21630 * 120.00166 * 269.68528 * 9 8 6 11 11 N 1.34781 * 119.99617 * 89.69515 * 9 8 6 12 12 C 1.46504 * 119.99561 * 179.97438 * 11 9 8 13 13 H 1.09005 * 109.50584 * 324.93109 * 12 11 9 14 14 C 1.52433 * 109.29606 * 204.85611 * 12 11 9 15 15 C 1.47084 * 114.22134 * 154.94600 * 14 12 11 16 16 C 1.54868 * 110.32417 * 62.78725 * 15 14 12 17 17 N 1.44578 * 109.60210 * 288.73808 * 16 15 14 18 18 C 1.36938 * 118.64317 * 270.74364 * 17 16 15 19 19 H 1.08000 * 119.99725 * 26.48348 * 18 17 16 20 20 C 1.38814 * 120.00173 * 206.49168 * 18 17 16 21 21 N 1.31621 * 119.99944 * 15.68447 * 20 18 17 22 22 Si 1.86797 * 119.99901 * 195.69109 * 20 18 17 23 23 H 1.48500 * 109.47190 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47250 * 119.99500 * 22 20 18 25 25 H 1.48500 * 109.46707 * 239.99581 * 22 20 18 26 26 C 1.47603 * 122.71335 * 90.72496 * 17 16 15 27 27 C 1.50875 * 109.49350 * 84.99435 * 12 11 9 28 28 H 1.09002 * 109.47663 * 269.97389 * 1 2 3 29 29 H 1.09006 * 109.47109 * 29.97767 * 1 2 3 30 30 H 1.09001 * 109.47045 * 149.97380 * 1 2 3 31 31 H 1.08997 * 109.47079 * 90.02231 * 5 4 3 32 32 H 1.08997 * 109.47148 * 210.03007 * 5 4 3 33 33 H 1.09003 * 109.46620 * 330.02825 * 5 4 3 34 34 H 0.96994 * 119.99852 * 359.97438 * 11 9 8 35 35 H 1.09007 * 108.57287 * 33.71899 * 14 12 11 36 36 H 1.09000 * 108.43458 * 276.07819 * 14 12 11 37 37 H 1.09012 * 109.33169 * 302.52892 * 15 14 12 38 38 H 1.08998 * 109.19280 * 182.96437 * 15 14 12 39 39 H 1.08997 * 109.44983 * 168.68967 * 16 15 14 40 40 H 1.09006 * 109.42072 * 48.76216 * 16 15 14 41 41 H 0.96993 * 119.99979 * 180.02562 * 21 20 18 42 42 H 1.09000 * 108.94642 * 197.18269 * 26 17 16 43 43 H 1.08993 * 108.87931 * 78.50464 * 26 17 16 44 44 H 1.09006 * 109.36694 * 91.66046 * 27 12 11 45 45 H 1.09000 * 109.36615 * 331.91976 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2726 1.0552 0.0000 4 7 3.6111 0.6475 -0.0006 5 6 4.7763 1.5355 -0.0013 6 6 3.6479 -0.6962 0.0050 7 9 4.7576 -1.4667 0.0117 8 6 2.3374 -1.1444 -0.0007 9 6 1.8931 -2.5474 -0.0010 10 8 1.7090 -3.1268 -1.0544 11 7 1.6900 -3.1902 1.1662 12 6 1.2471 -4.5867 1.1658 13 1 0.5740 -4.7548 0.3252 14 6 0.5191 -4.8845 2.4715 15 6 -0.4465 -5.9907 2.3852 16 6 0.2805 -7.3136 2.0394 17 7 0.7286 -7.2760 0.6653 18 6 -0.1172 -7.7255 -0.3134 19 1 -1.1858 -7.6935 -0.1602 20 6 0.3990 -8.2225 -1.5023 21 7 1.6709 -8.5518 -1.5808 22 14 -0.7115 -8.4238 -2.9908 23 1 -2.0876 -7.9860 -2.6445 24 1 -0.1949 -7.5952 -4.1096 25 1 -0.7351 -9.8507 -3.4014 26 6 2.0598 -6.7727 0.2738 27 6 2.4455 -5.4948 1.0408 28 1 -0.3634 -0.0005 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 5.0660 1.7555 1.0261 32 1 5.6043 1.0480 -0.5159 33 1 4.5253 2.4637 -0.5148 34 1 1.8370 -2.7281 2.0062 35 1 -0.0114 -3.9858 2.7861 36 1 1.2608 -5.1310 3.2313 37 1 -1.1806 -5.7693 1.6104 38 1 -0.9548 -6.0982 3.3434 39 1 -0.4045 -8.1505 2.1751 40 1 1.1401 -7.4378 2.6982 41 1 2.0317 -8.8988 -2.4117 42 1 2.0563 -6.5568 -0.7946 43 1 2.8022 -7.5446 0.4761 44 1 2.8006 -5.7637 2.0356 45 1 3.2380 -4.9753 0.5022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052902414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:13 Heat of formation + Delta-G solvation = 24.067325 kcal Electronic energy + Delta-G solvation = -28582.494721 eV Core-core repulsion = 24552.257643 eV Total energy + Delta-G solvation = -4030.237078 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.46353 -41.54950 -39.38970 -37.47403 -34.56777 -34.40675 -32.78238 -31.13481 -30.64778 -30.17982 -29.48844 -26.51257 -25.78177 -24.05364 -23.24370 -22.36523 -20.90671 -20.20666 -19.93069 -19.15016 -18.00705 -17.07860 -16.78308 -16.52067 -16.22018 -15.79349 -15.02034 -14.92301 -14.55549 -14.26814 -13.97611 -13.84042 -13.77147 -13.49876 -13.40841 -13.10128 -12.91681 -12.75603 -12.60337 -12.38267 -12.34083 -11.85399 -11.52685 -11.07659 -11.02403 -10.82176 -10.71700 -10.34424 -10.14022 -10.00859 -9.88113 -9.64459 -9.58432 -9.56603 -9.50080 -8.88709 -8.64799 -8.25879 -6.55698 -5.66199 -3.09957 1.16232 1.67864 2.08355 2.78238 3.47773 3.50093 3.56002 3.56986 3.66489 4.13279 4.53618 4.61912 4.68001 4.84381 4.95963 5.03053 5.11572 5.24618 5.36416 5.40735 5.55642 5.56478 5.62890 5.65576 5.81441 6.07178 6.14246 6.18111 6.27382 6.37467 6.44989 6.50694 6.55762 6.66882 6.75486 6.84620 6.91593 7.07458 7.13311 7.14350 7.55114 7.82418 7.85203 7.95596 8.54964 8.59641 9.35831 10.03102 10.47334 11.41351 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.015549 B = 0.003572 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.364225 B = 7837.746925 C = 8171.655489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.133 3.867 3 N -0.274 5.274 4 N -0.377 5.377 5 C 0.094 3.906 6 C 0.291 3.709 7 F -0.087 7.087 8 C -0.283 4.283 9 C 0.589 3.411 10 O -0.514 6.514 11 N -0.717 5.717 12 C 0.154 3.846 13 H 0.105 0.895 14 C -0.106 4.106 15 C -0.145 4.145 16 C 0.156 3.844 17 N -0.591 5.591 18 C -0.258 4.258 19 H 0.065 0.935 20 C 0.007 3.993 21 N -0.903 5.903 22 Si 0.898 3.102 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.292 1.292 26 C 0.183 3.817 27 C -0.147 4.147 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.392 0.608 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.046 0.954 40 H 0.031 0.969 41 H 0.252 0.748 42 H 0.078 0.922 43 H 0.025 0.975 44 H 0.046 0.954 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.889 20.171 8.879 22.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.034 4.034 3 N -0.097 5.097 4 N -0.163 5.163 5 C -0.047 4.047 6 C 0.144 3.856 7 F -0.066 7.066 8 C -0.299 4.299 9 C 0.372 3.628 10 O -0.388 6.388 11 N -0.367 5.367 12 C 0.051 3.949 13 H 0.123 0.877 14 C -0.144 4.144 15 C -0.186 4.186 16 C 0.028 3.972 17 N -0.313 5.313 18 C -0.388 4.388 19 H 0.083 0.917 20 C -0.192 4.192 21 N -0.547 5.547 22 Si 0.729 3.271 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.219 1.219 26 C 0.057 3.943 27 C -0.187 4.187 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.118 0.882 34 H 0.225 0.775 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.062 0.938 42 H 0.097 0.903 43 H 0.043 0.957 44 H 0.064 0.936 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.086 20.968 7.964 22.799 hybrid contribution 0.240 -0.739 -0.411 0.879 sum 4.326 20.229 7.554 22.023 Atomic orbital electron populations 1.20347 0.85112 1.04527 1.03848 1.22213 0.97229 0.88007 0.95946 1.77284 0.84127 1.21222 1.27091 1.48649 1.07251 1.02596 1.57754 1.22046 0.83751 0.94681 1.04205 1.17817 0.83477 0.81766 1.02541 1.91676 1.49625 1.71543 1.93766 1.19885 0.90235 0.96101 1.23652 1.16996 0.77770 0.83616 0.84409 1.90897 1.49714 1.67078 1.31107 1.46325 1.68663 1.14205 1.07521 1.20570 0.96801 0.77632 0.99926 0.87742 1.20548 0.98751 0.98843 0.96255 1.21454 0.98591 0.98295 1.00284 1.20694 0.95973 0.93646 0.86869 1.43684 1.15074 1.71621 1.00892 1.19207 0.89137 1.35088 0.95351 0.91717 1.25007 0.96124 0.98531 0.99522 1.70063 1.12783 1.46134 1.25723 0.86287 0.80232 0.77083 0.83548 1.20288 1.21520 1.21910 1.20941 0.85646 0.89140 0.98532 1.22453 0.96888 0.98938 1.00466 0.89538 0.89953 0.89414 0.89899 0.89033 0.88200 0.77512 0.93308 0.92846 0.91857 0.93070 0.93606 0.95038 0.93814 0.90331 0.95711 0.93576 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.28 36.00 0.37 -0.41 16 2 C 0.13 1.67 7.26 -82.01 -0.60 1.07 16 3 N -0.27 -3.36 12.49 33.90 0.42 -2.93 16 4 N -0.38 -4.17 3.98 -67.94 -0.27 -4.44 16 5 C 0.09 0.57 11.43 59.85 0.68 1.25 16 6 C 0.29 3.83 8.70 -16.32 -0.14 3.69 16 7 F -0.09 -1.15 17.31 2.25 0.04 -1.11 16 8 C -0.28 -4.09 5.89 -104.97 -0.62 -4.71 16 9 C 0.59 10.21 7.17 -12.63 -0.09 10.12 16 10 O -0.51 -11.52 16.77 5.25 0.09 -11.43 16 11 N -0.72 -10.92 4.92 -56.29 -0.28 -11.20 16 12 C 0.15 2.78 2.05 -69.29 -0.14 2.63 16 13 H 0.10 2.36 6.91 -51.93 -0.36 2.00 16 14 C -0.11 -1.63 4.69 -29.86 -0.14 -1.77 16 15 C -0.15 -2.48 5.74 -28.59 -0.16 -2.64 16 16 C 0.16 3.21 5.66 -4.08 -0.02 3.19 16 17 N -0.59 -14.75 2.27 -172.09 -0.39 -15.14 16 18 C -0.26 -7.16 9.44 -15.06 -0.14 -7.30 16 19 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 20 C 0.01 0.19 4.87 -17.43 -0.08 0.11 16 21 N -0.90 -27.01 11.02 55.49 0.61 -26.40 16 22 Si 0.90 22.67 29.58 -169.99 -5.03 17.64 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 24 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 C 0.18 4.54 4.66 -2.94 -0.01 4.53 16 27 C -0.15 -2.93 5.39 -27.30 -0.15 -3.08 16 28 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.09 0.96 8.01 -51.93 -0.42 0.55 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.39 4.70 8.57 -40.82 -0.35 4.35 16 35 H 0.05 0.64 8.03 -51.92 -0.42 0.22 16 36 H 0.05 0.76 7.35 -51.93 -0.38 0.38 16 37 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.95 7.99 -51.93 -0.41 0.54 16 40 H 0.03 0.61 8.06 -51.93 -0.42 0.19 16 41 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.08 2.26 6.33 -51.93 -0.33 1.93 16 43 H 0.02 0.66 8.03 -51.93 -0.42 0.24 16 44 H 0.05 0.83 7.31 -51.93 -0.38 0.45 16 45 H 0.06 1.13 7.84 -51.93 -0.41 0.73 16 LS Contribution 370.51 15.07 5.58 5.58 Total: -1.00 -34.34 370.51 -7.27 -41.61 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -6.80 Total: 1.14 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -1.25 Total: 6.68 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: 0.10 Total: -60.11 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.43 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 0.04 Total: -1.11 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.03 Total: 17.64 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.34 -7.27 -41.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052902414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.677 kcal (2) G-P(sol) polarization free energy of solvation -34.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds