Wall clock time and date at job start Tue Mar 31 2020 13:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99864 * 2 1 4 4 H 1.48496 * 109.47056 * 274.99236 * 3 2 1 5 5 H 1.48500 * 109.46820 * 34.98931 * 3 2 1 6 6 H 1.48497 * 109.47000 * 154.98777 * 3 2 1 7 7 C 1.38815 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99566 * 185.07318 * 7 2 1 9 9 N 1.36934 * 120.00039 * 5.06869 * 7 2 1 10 10 C 1.47677 * 134.45370 * 173.49307 * 9 7 2 11 11 C 1.53442 * 85.97788 * 155.68972 * 10 9 7 12 12 C 1.47661 * 134.45595 * 353.47095 * 9 7 2 13 13 C 1.52885 * 113.56119 * 137.62721 * 11 10 9 14 14 N 1.47339 * 108.04339 * 179.97438 * 13 11 10 15 15 C 1.34776 * 121.05782 * 131.61894 * 14 13 11 16 16 O 1.21280 * 119.99902 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00040 * 179.97438 * 15 14 13 18 18 C 1.53006 * 109.47414 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47273 * 179.97438 * 18 17 15 20 20 H 1.09001 * 109.86407 * 53.99959 * 19 18 17 21 21 C 1.54098 * 109.87476 * 175.00063 * 19 18 17 22 22 C 1.54801 * 104.18726 * 121.45857 * 21 19 18 23 23 C 1.54998 * 102.09211 * 20.87969 * 22 21 19 24 24 O 1.43740 * 109.88048 * 292.83294 * 19 18 17 25 25 C 1.47131 * 117.88811 * 311.59437 * 14 13 11 26 26 C 1.53218 * 108.73345 * 52.21979 * 25 14 13 27 27 O 1.42495 * 113.81007 * 268.76131 * 11 10 9 28 28 H 0.96989 * 120.00218 * 359.97438 * 1 2 3 29 29 H 1.09002 * 113.79013 * 41.42378 * 10 9 7 30 30 H 1.09000 * 113.79131 * 269.95197 * 10 9 7 31 31 H 1.08995 * 113.79492 * 90.04530 * 12 9 7 32 32 H 1.08997 * 113.79604 * 318.56484 * 12 9 7 33 33 H 1.09004 * 109.75039 * 60.35555 * 13 11 10 34 34 H 1.09005 * 109.75041 * 299.62994 * 13 11 10 35 35 H 1.08999 * 109.47365 * 299.99856 * 17 15 14 36 36 H 1.09000 * 109.47146 * 59.99618 * 17 15 14 37 37 H 1.08999 * 109.46926 * 300.00356 * 18 17 15 38 38 H 1.09002 * 109.46665 * 60.00134 * 18 17 15 39 39 H 1.09008 * 110.48554 * 240.13488 * 21 19 18 40 40 H 1.09000 * 110.48872 * 2.77889 * 21 19 18 41 41 H 1.09001 * 110.90872 * 139.07443 * 22 21 19 42 42 H 1.09001 * 110.91054 * 262.64350 * 22 21 19 43 43 H 1.09000 * 110.61921 * 81.47721 * 23 22 21 44 44 H 1.09007 * 110.61881 * 204.47805 * 23 22 21 45 45 H 1.08997 * 109.59533 * 171.99337 * 25 14 13 46 46 H 1.09002 * 109.59378 * 292.29539 * 25 14 13 47 47 H 1.09002 * 109.49140 * 65.84065 * 26 25 14 48 48 H 1.08992 * 109.49823 * 185.89596 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3921 2.1074 -1.3947 5 1 1.5042 2.6199 0.8028 6 1 3.5964 1.4121 0.5920 7 6 2.0103 -1.2022 -0.0005 8 1 3.0871 -1.2039 0.0822 9 7 1.3297 -2.3857 -0.1058 10 6 1.7300 -3.7990 -0.2583 11 6 0.3723 -4.1390 0.3706 12 6 -0.0986 -2.7603 -0.1120 13 6 -0.3445 -5.3024 -0.3149 14 7 -1.6241 -5.5239 0.3812 15 6 -2.7767 -5.6500 -0.3059 16 8 -2.7714 -5.5813 -1.5167 17 6 -4.0719 -5.8765 0.4304 18 6 -5.2190 -5.9833 -0.5764 19 6 -6.5339 -6.2139 0.1711 20 1 -6.6734 -5.4375 0.9234 21 6 -7.7114 -6.1980 -0.8229 22 6 -8.3752 -7.5853 -0.6469 23 6 -7.8734 -8.0097 0.7568 24 8 -6.5202 -7.5080 0.7966 25 6 -1.6036 -5.6034 1.8502 26 6 -0.8783 -4.3707 2.3997 27 8 0.4116 -4.2681 1.7891 28 1 -0.4850 0.8399 0.0004 29 1 2.5834 -4.0831 0.3574 30 1 1.8265 -4.1191 -1.2958 31 1 -0.5460 -2.7716 -1.1059 32 1 -0.6983 -2.2194 0.6201 33 1 0.2689 -6.2013 -0.2522 34 1 -0.5314 -5.0556 -1.3600 35 1 -4.0060 -6.7998 1.0059 36 1 -4.2574 -5.0405 1.1048 37 1 -5.2847 -5.0598 -1.1516 38 1 -5.0336 -6.8191 -1.2511 39 1 -8.4139 -5.4039 -0.5694 40 1 -7.3478 -6.0756 -1.8431 41 1 -9.4619 -7.5013 -0.6625 42 1 -8.0298 -8.2816 -1.4111 43 1 -8.4776 -7.5464 1.5368 44 1 -7.8833 -9.0952 0.8560 45 1 -2.6253 -5.6256 2.2294 46 1 -1.0790 -6.5073 2.1601 47 1 -1.4593 -3.4764 2.1744 48 1 -0.7634 -4.4674 3.4793 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053165833.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:43 Heat of formation + Delta-G solvation = -63.297997 kcal Electronic energy + Delta-G solvation = -28529.328839 eV Core-core repulsion = 24586.470870 eV Total energy + Delta-G solvation = -3942.857968 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.40461 -39.71502 -38.63131 -36.18262 -34.37208 -33.72532 -32.36142 -32.20947 -30.07791 -29.02407 -27.67153 -26.11095 -25.05699 -24.07791 -23.26021 -22.25983 -21.54560 -21.06842 -19.12442 -18.67544 -17.17608 -16.79230 -16.68435 -16.21573 -16.00077 -15.77250 -15.41918 -15.21497 -14.84245 -14.40873 -14.10584 -13.92210 -13.82972 -13.57187 -13.26460 -13.09034 -12.96774 -12.48430 -12.35958 -12.18864 -12.02081 -11.79963 -11.61969 -11.31711 -11.14146 -11.12067 -11.06470 -10.88379 -10.85911 -10.78676 -10.62053 -10.20675 -9.94860 -9.93195 -9.59607 -9.46257 -9.20997 -8.78515 -8.18522 -6.84158 -5.74234 -3.05379 2.79397 3.05128 3.41897 3.46637 3.48812 3.59123 4.08350 4.25764 4.35476 4.47428 4.59519 4.61810 4.77466 4.91439 4.95992 5.03664 5.05314 5.14089 5.18276 5.28234 5.30083 5.36224 5.37729 5.41838 5.44730 5.47916 5.56215 5.62134 5.66589 5.77179 5.79962 5.86636 5.94812 6.01592 6.12145 6.13974 6.33690 6.50503 6.53004 6.62498 6.65915 7.04409 7.20256 7.52558 7.53539 7.84603 8.00101 8.32164 9.06987 9.73507 10.61312 11.43494 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.019538 B = 0.002706 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.729557 B =10344.857700 C =10975.900959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.218 4.218 8 H 0.081 0.919 9 N -0.604 5.604 10 C 0.136 3.864 11 C 0.049 3.951 12 C 0.155 3.845 13 C 0.099 3.901 14 N -0.612 5.612 15 C 0.516 3.484 16 O -0.543 6.543 17 C -0.136 4.136 18 C -0.101 4.101 19 C 0.075 3.925 20 H 0.070 0.930 21 C -0.153 4.153 22 C -0.156 4.156 23 C 0.046 3.954 24 O -0.373 6.373 25 C 0.074 3.926 26 C 0.046 3.954 27 O -0.342 6.342 28 H 0.253 0.747 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.059 0.941 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.075 0.925 47 H 0.060 0.940 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.704 -16.880 3.756 23.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.346 4.346 8 H 0.099 0.901 9 N -0.330 5.330 10 C 0.009 3.991 11 C 0.007 3.993 12 C 0.030 3.970 13 C -0.024 4.024 14 N -0.346 5.346 15 C 0.305 3.695 16 O -0.420 6.420 17 C -0.176 4.176 18 C -0.139 4.139 19 C 0.017 3.983 20 H 0.088 0.912 21 C -0.191 4.191 22 C -0.194 4.194 23 C -0.031 4.031 24 O -0.293 6.293 25 C -0.049 4.049 26 C -0.031 4.031 27 O -0.260 6.260 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.077 0.923 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.093 0.907 47 H 0.078 0.922 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.299 -16.582 3.331 22.806 hybrid contribution -0.035 1.087 -0.164 1.100 sum -15.334 -15.494 3.167 22.028 Atomic orbital electron populations 1.69835 1.05078 1.25270 1.56590 1.24813 0.95676 0.97521 1.02466 0.86109 0.78737 0.83552 0.77467 1.21657 1.21765 1.20526 1.19005 0.90747 0.81838 1.42987 0.90087 1.45777 1.01982 1.00564 1.84682 1.22501 0.93449 0.86489 0.96654 1.23713 0.99136 0.94778 0.81671 1.22604 0.88474 0.87812 0.98131 1.22229 0.83308 0.98379 0.98478 1.48181 1.07579 1.71866 1.06928 1.20679 0.85026 0.75929 0.87875 1.90683 1.86524 1.50710 1.14087 1.21649 0.92257 1.04141 0.99558 1.21551 0.91324 1.03803 0.97205 1.22832 0.95314 0.86089 0.94016 0.91193 1.23007 0.97351 0.97687 1.01057 1.23131 1.00960 0.97132 0.98159 1.23530 0.83698 0.99839 0.96026 1.88891 1.27300 1.32910 1.80157 1.22440 1.02327 0.99993 0.80171 1.22864 0.86170 0.96380 0.97726 1.87920 1.26165 1.93517 1.18419 0.93727 0.92646 0.93244 0.94736 0.91106 0.91453 0.88089 0.88442 0.88972 0.89771 0.90432 0.90574 0.89979 0.90369 0.90476 0.92277 0.89139 0.89090 0.90698 0.92165 0.88157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.00 11.51 55.49 0.64 -27.36 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 22.64 29.56 -169.99 -5.02 17.62 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.22 -6.32 10.69 -15.06 -0.16 -6.48 16 8 H 0.08 2.26 7.83 -52.48 -0.41 1.85 16 9 N -0.60 -16.14 3.70 -180.30 -0.67 -16.80 16 10 C 0.14 2.89 8.33 -3.18 -0.03 2.86 16 11 C 0.05 0.97 1.21 -90.30 -0.11 0.86 16 12 C 0.16 3.83 6.56 -3.17 -0.02 3.81 16 13 C 0.10 1.68 5.78 -3.64 -0.02 1.66 16 14 N -0.61 -9.23 3.03 -172.44 -0.52 -9.76 16 15 C 0.52 7.94 7.71 -10.99 -0.08 7.85 16 16 O -0.54 -10.27 15.48 5.56 0.09 -10.18 16 17 C -0.14 -1.54 3.99 -27.88 -0.11 -1.65 16 18 C -0.10 -1.11 3.99 -26.73 -0.11 -1.21 16 19 C 0.08 0.68 3.41 -26.16 -0.09 0.60 16 20 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 21 C -0.15 -1.15 6.64 -25.21 -0.17 -1.32 16 22 C -0.16 -1.01 7.15 -24.73 -0.18 -1.19 16 23 C 0.05 0.33 7.72 38.21 0.29 0.62 16 24 O -0.37 -3.77 10.84 -35.23 -0.38 -4.16 16 25 C 0.07 0.89 6.50 -3.58 -0.02 0.87 16 26 C 0.05 0.69 6.88 37.27 0.26 0.94 16 27 O -0.34 -6.63 10.52 -35.23 -0.37 -7.00 16 28 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.05 0.98 8.09 -51.93 -0.42 0.56 16 31 H 0.03 0.90 7.94 -51.93 -0.41 0.49 16 32 H 0.07 1.93 6.51 -51.93 -0.34 1.59 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.10 1.86 6.91 -51.93 -0.36 1.50 16 35 H 0.10 0.99 7.75 -51.93 -0.40 0.59 16 36 H 0.09 0.92 7.69 -51.93 -0.40 0.52 16 37 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 38 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 39 H 0.08 0.49 8.14 -51.92 -0.42 0.06 16 40 H 0.08 0.64 7.70 -51.93 -0.40 0.24 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.09 0.54 8.14 -51.92 -0.42 0.12 16 45 H 0.09 0.83 6.03 -51.93 -0.31 0.52 16 46 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.06 1.00 7.19 -51.93 -0.37 0.63 16 48 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 377.59 15.07 5.69 5.69 Total: -1.00 -35.34 377.59 -9.22 -44.57 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -8.03 Total: -0.50 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -0.64 Total: 7.89 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: -0.55 Total: -53.92 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.67 Total: -21.34 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.34 -9.22 -44.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053165833.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.732 kcal (2) G-P(sol) polarization free energy of solvation -35.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds