Wall clock time and date at job start Tue Mar 31 2020 13:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 119.99375 * 2 1 4 4 H 1.48500 * 109.47133 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47492 * 299.99975 * 3 2 1 6 6 H 1.48496 * 109.47337 * 60.00005 * 3 2 1 7 7 C 1.38801 * 120.00526 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00243 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99922 * 359.97438 * 7 2 1 10 10 C 1.47673 * 134.45558 * 179.97438 * 9 7 2 11 11 C 1.53448 * 85.97696 * 155.68795 * 10 9 7 12 12 C 1.47667 * 134.45675 * 359.97438 * 9 7 2 13 13 C 1.52893 * 113.54276 * 137.64387 * 11 10 9 14 14 N 1.47341 * 108.05807 * 179.88577 * 13 11 10 15 15 C 1.34777 * 121.04812 * 131.60463 * 14 13 11 16 16 O 1.21278 * 120.00298 * 0.02562 * 15 14 13 17 17 C 1.50707 * 119.99866 * 180.02562 * 15 14 13 18 18 C 1.53000 * 109.47012 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47091 * 180.02562 * 18 17 15 20 20 H 1.09006 * 110.32714 * 307.25107 * 19 18 17 21 21 C 1.54476 * 110.37443 * 184.99903 * 19 18 17 22 22 C 1.54506 * 104.06496 * 217.18460 * 21 19 18 23 23 C 1.54476 * 104.06124 * 0.02562 * 22 21 19 24 24 O 1.44424 * 104.80691 * 23.97571 * 23 22 21 25 25 C 1.47119 * 117.89953 * 311.61931 * 14 13 11 26 26 C 1.53236 * 108.71376 * 52.24023 * 25 14 13 27 27 O 1.42491 * 113.79820 * 268.75625 * 11 10 9 28 28 H 0.96990 * 120.00537 * 359.97438 * 1 2 3 29 29 H 1.08999 * 113.79208 * 41.42439 * 10 9 7 30 30 H 1.08998 * 113.79113 * 269.95044 * 10 9 7 31 31 H 1.09000 * 113.79600 * 90.04759 * 12 9 7 32 32 H 1.09002 * 113.79315 * 318.56797 * 12 9 7 33 33 H 1.08998 * 109.74413 * 60.24859 * 13 11 10 34 34 H 1.08996 * 109.78658 * 299.55225 * 13 11 10 35 35 H 1.08995 * 109.47032 * 299.99763 * 17 15 14 36 36 H 1.09004 * 109.46554 * 59.99941 * 17 15 14 37 37 H 1.09008 * 109.46918 * 299.99716 * 18 17 15 38 38 H 1.08997 * 109.47201 * 60.00295 * 18 17 15 39 39 H 1.09003 * 110.51007 * 335.83211 * 21 19 18 40 40 H 1.09007 * 110.51081 * 98.40352 * 21 19 18 41 41 H 1.09003 * 110.50783 * 118.64305 * 22 21 19 42 42 H 1.09001 * 110.51684 * 241.21735 * 22 21 19 43 43 H 1.09007 * 110.37578 * 142.80592 * 23 22 21 44 44 H 1.09001 * 110.37541 * 265.14172 * 23 22 21 45 45 H 1.09003 * 109.59907 * 292.46975 * 25 14 13 46 46 H 1.08999 * 109.72925 * 172.08130 * 25 14 13 47 47 H 1.08997 * 109.49035 * 65.81598 * 26 25 14 48 48 H 1.09005 * 109.49047 * 185.89840 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3966 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 1.7216 -3.8107 -0.0015 11 6 0.3493 -4.0812 0.6297 12 6 -0.1042 -2.7568 0.0004 13 6 -0.3589 -5.3059 0.0498 14 7 -1.6530 -5.4538 0.7385 15 6 -2.7921 -5.6453 0.0440 16 8 -2.7622 -5.6987 -1.1672 17 6 -4.1030 -5.7931 0.7726 18 6 -5.2300 -5.9975 -0.2417 19 6 -6.5610 -6.1469 0.4979 20 1 -6.4857 -6.9226 1.2600 21 6 -7.6950 -6.4789 -0.4972 22 6 -8.9143 -5.7042 0.0510 23 6 -8.3725 -4.9954 1.3121 24 8 -6.9490 -4.8892 1.0930 25 6 -1.6625 -5.3855 2.2080 26 6 -0.9439 -4.1048 2.6454 27 8 0.3589 -4.0669 2.0545 28 1 -0.4850 0.8399 0.0004 29 1 2.5604 -4.0342 0.6577 30 1 1.8378 -4.2341 -0.9991 31 1 -0.5306 -2.8670 -0.9967 32 1 -0.7162 -2.1428 0.6611 33 1 0.2495 -6.1952 0.2142 34 1 -0.5241 -5.1652 -1.0184 35 1 -4.0531 -6.6540 1.4392 36 1 -4.2981 -4.8929 1.3556 37 1 -5.2798 -5.1362 -0.9080 38 1 -5.0351 -6.8974 -0.8250 39 1 -7.4393 -6.1301 -1.4977 40 1 -7.8934 -7.5507 -0.5064 41 1 -9.2613 -4.9725 -0.6786 42 1 -9.7181 -6.3925 0.3124 43 1 -8.8162 -4.0046 1.4107 44 1 -8.5761 -5.5932 2.2005 45 1 -1.1452 -6.2531 2.6177 46 1 -2.6909 -5.3690 2.5690 47 1 -1.5167 -3.2368 2.3190 48 1 -0.8511 -4.0925 3.7314 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053165835.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:47 Heat of formation + Delta-G solvation = -62.709429 kcal Electronic energy + Delta-G solvation = -28591.738341 eV Core-core repulsion = 24648.905895 eV Total energy + Delta-G solvation = -3942.832446 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.39429 -39.66000 -38.62975 -36.17454 -34.36733 -33.74036 -32.31932 -32.19045 -30.06592 -29.01351 -27.66214 -26.11486 -25.03895 -24.15295 -23.25218 -22.12654 -21.47637 -21.10756 -19.11687 -18.66163 -17.17633 -16.82430 -16.68957 -16.07100 -16.04736 -15.74005 -15.46139 -15.20485 -14.81368 -14.38762 -14.11260 -13.99863 -13.83396 -13.56600 -13.25590 -13.05148 -12.95336 -12.48314 -12.32123 -12.11959 -12.03162 -11.71186 -11.66146 -11.30897 -11.14814 -11.08794 -10.99968 -10.89264 -10.85001 -10.76797 -10.60249 -10.18446 -9.99332 -9.92870 -9.58060 -9.47224 -9.18664 -8.78919 -8.17983 -6.83288 -5.70624 -3.03047 2.78019 3.04879 3.43086 3.47783 3.50762 3.64829 4.09755 4.26680 4.38590 4.48641 4.60722 4.63865 4.74581 4.92282 4.96571 5.03901 5.06854 5.15622 5.18224 5.27199 5.30276 5.34853 5.38409 5.42035 5.44871 5.51628 5.56396 5.63764 5.68387 5.76589 5.79403 5.87657 5.93176 6.03203 6.12556 6.14030 6.33924 6.50448 6.53382 6.62335 6.64261 7.05957 7.24300 7.52181 7.55157 7.86267 8.02646 8.31344 9.09150 9.75840 10.62513 11.46459 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.015525 B = 0.002932 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.143697 B = 9546.418422 C =10430.119151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.218 4.218 8 H 0.081 0.919 9 N -0.604 5.604 10 C 0.136 3.864 11 C 0.049 3.951 12 C 0.152 3.848 13 C 0.099 3.901 14 N -0.611 5.611 15 C 0.516 3.484 16 O -0.542 6.542 17 C -0.137 4.137 18 C -0.097 4.097 19 C 0.073 3.927 20 H 0.069 0.931 21 C -0.152 4.152 22 C -0.156 4.156 23 C 0.044 3.956 24 O -0.368 6.368 25 C 0.074 3.926 26 C 0.046 3.954 27 O -0.342 6.342 28 H 0.252 0.748 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.033 0.967 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.091 0.909 47 H 0.061 0.939 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.710 -16.853 5.218 23.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.345 4.345 8 H 0.099 0.901 9 N -0.330 5.330 10 C 0.009 3.991 11 C 0.008 3.992 12 C 0.026 3.974 13 C -0.024 4.024 14 N -0.345 5.345 15 C 0.305 3.695 16 O -0.420 6.420 17 C -0.177 4.177 18 C -0.135 4.135 19 C 0.016 3.984 20 H 0.087 0.913 21 C -0.190 4.190 22 C -0.194 4.194 23 C -0.033 4.033 24 O -0.287 6.287 25 C -0.049 4.049 26 C -0.032 4.032 27 O -0.260 6.260 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.119 0.881 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.109 0.891 44 H 0.076 0.924 45 H 0.092 0.908 46 H 0.109 0.891 47 H 0.079 0.921 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.333 -16.329 4.726 22.893 hybrid contribution -0.018 0.772 -0.114 0.781 sum -15.351 -15.557 4.612 22.337 Atomic orbital electron populations 1.69828 1.05018 1.25126 1.56920 1.24775 0.95671 0.97499 1.02586 0.86036 0.78718 0.83749 0.77191 1.20456 1.21808 1.21757 1.19041 0.90273 0.81767 1.43428 0.90084 1.45799 1.02002 0.99141 1.86052 1.22491 0.93310 0.86758 0.96507 1.23689 0.99086 0.94607 0.81847 1.22674 0.88574 0.88983 0.97139 1.22231 0.82907 0.98273 0.98975 1.48177 1.07559 1.71911 1.06879 1.20660 0.85180 0.75858 0.87805 1.90684 1.86551 1.50753 1.13977 1.21661 0.92118 1.04361 0.99542 1.21420 0.90587 1.04275 0.97244 1.23083 0.94643 0.86604 0.94088 0.91326 1.22986 0.94613 1.00844 1.00508 1.22939 0.98287 0.99892 0.98290 1.23382 0.82009 1.01271 0.96653 1.89200 1.21976 1.35397 1.82158 1.22438 1.02338 0.99892 0.80272 1.22873 0.85871 0.96022 0.98413 1.87922 1.25794 1.94292 1.17984 0.93772 0.92634 0.93275 0.94907 0.90615 0.91462 0.88102 0.89249 0.88151 0.89982 0.89866 0.90242 0.90558 0.90648 0.90707 0.89126 0.92424 0.90755 0.89068 0.92051 0.88172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.28 11.39 55.49 0.63 -27.64 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 22.83 29.55 -169.99 -5.02 17.80 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.22 -6.33 10.70 -15.06 -0.16 -6.49 16 8 H 0.08 2.27 7.83 -52.49 -0.41 1.86 16 9 N -0.60 -16.22 3.70 -180.29 -0.67 -16.89 16 10 C 0.14 2.91 8.33 -3.18 -0.03 2.88 16 11 C 0.05 0.99 1.21 -90.29 -0.11 0.88 16 12 C 0.15 3.79 6.65 -3.16 -0.02 3.77 16 13 C 0.10 1.68 5.78 -3.64 -0.02 1.65 16 14 N -0.61 -9.19 3.03 -172.43 -0.52 -9.71 16 15 C 0.52 7.89 7.71 -10.98 -0.08 7.81 16 16 O -0.54 -10.21 15.48 5.56 0.09 -10.12 16 17 C -0.14 -1.53 4.01 -27.88 -0.11 -1.64 16 18 C -0.10 -1.06 4.13 -26.73 -0.11 -1.17 16 19 C 0.07 0.67 3.25 -25.96 -0.08 0.58 16 20 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 21 C -0.15 -1.15 6.63 -25.17 -0.17 -1.32 16 22 C -0.16 -1.07 7.09 -25.17 -0.18 -1.25 16 23 C 0.04 0.35 7.63 37.93 0.29 0.64 16 24 O -0.37 -4.10 11.13 -35.23 -0.39 -4.49 16 25 C 0.07 0.89 6.50 -3.58 -0.02 0.86 16 26 C 0.05 0.69 6.88 37.28 0.26 0.95 16 27 O -0.34 -6.69 10.52 -35.23 -0.37 -7.06 16 28 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.05 0.97 8.09 -51.93 -0.42 0.55 16 31 H 0.03 0.87 7.94 -51.93 -0.41 0.45 16 32 H 0.08 2.10 6.31 -51.93 -0.33 1.77 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.10 1.85 6.91 -51.93 -0.36 1.50 16 35 H 0.09 0.76 7.99 -51.93 -0.41 0.34 16 36 H 0.10 1.14 7.56 -51.93 -0.39 0.75 16 37 H 0.08 1.08 8.10 -51.92 -0.42 0.66 16 38 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 39 H 0.08 0.65 7.87 -51.93 -0.41 0.24 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.09 0.84 6.04 -51.93 -0.31 0.52 16 47 H 0.06 1.06 7.20 -51.93 -0.37 0.68 16 48 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 377.79 15.07 5.69 5.69 Total: -1.00 -35.76 377.79 -9.25 -45.01 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -8.04 Total: -0.37 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -0.65 Total: 7.78 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.56 Total: -54.25 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.68 Total: -21.67 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.76 -9.25 -45.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053165835.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.699 kcal (2) G-P(sol) polarization free energy of solvation -35.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds