Wall clock time and date at job start Tue Mar 31 2020 14:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.52115 * 2 1 4 4 O 1.21276 * 120.00175 * 120.91924 * 3 2 1 5 5 N 1.34777 * 119.99728 * 300.91599 * 3 2 1 6 6 C 1.47130 * 121.06316 * 355.13948 * 5 3 2 7 7 C 1.53217 * 108.73088 * 127.72620 * 6 5 3 8 8 O 1.43116 * 109.35535 * 54.19779 * 7 6 5 9 9 C 1.42356 * 113.99138 * 300.22592 * 8 7 6 10 10 C 1.52929 * 114.29333 * 285.04838 * 9 8 7 11 11 N 1.47158 * 87.84478 * 271.72038 * 10 9 8 12 12 C 1.36934 * 135.99886 * 153.32746 * 11 10 9 13 13 H 1.07997 * 120.00404 * 359.97438 * 12 11 10 14 14 C 1.38815 * 120.00138 * 180.27163 * 12 11 10 15 15 N 1.31624 * 119.99718 * 359.72055 * 14 12 11 16 16 Si 1.86797 * 120.00357 * 179.72438 * 14 12 11 17 17 H 1.48498 * 109.46961 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47421 * 120.00002 * 16 14 12 19 19 H 1.48496 * 109.47027 * 240.00205 * 16 14 12 20 20 C 1.47177 * 88.00218 * 333.57825 * 11 10 9 21 21 C 1.47361 * 121.06208 * 175.16429 * 5 3 2 22 22 C 1.53184 * 109.52190 * 120.12340 * 2 1 3 23 23 C 1.53172 * 109.03324 * 176.95228 * 22 2 1 24 24 C 1.53088 * 109.16431 * 303.01474 * 23 22 2 25 25 O 1.42905 * 109.41473 * 57.61420 * 24 23 22 26 26 C 1.43035 * 114.12794 * 298.83893 * 25 24 23 27 27 H 1.08996 * 109.47095 * 49.21345 * 1 2 3 28 28 H 1.09008 * 109.47130 * 169.21448 * 1 2 3 29 29 H 1.08997 * 109.47248 * 289.20990 * 1 2 3 30 30 H 1.09004 * 109.59416 * 247.50002 * 6 5 3 31 31 H 1.08999 * 109.59465 * 7.95044 * 6 5 3 32 32 H 1.09005 * 109.49305 * 174.15856 * 7 6 5 33 33 H 1.08996 * 109.49227 * 294.23137 * 7 6 5 34 34 H 1.08997 * 113.48848 * 156.97426 * 10 9 8 35 35 H 1.09000 * 113.54838 * 26.47467 * 10 9 8 36 36 H 0.97003 * 119.99909 * 179.97438 * 15 14 12 37 37 H 1.09003 * 113.49192 * 141.16452 * 20 11 10 38 38 H 1.09001 * 113.49319 * 271.68196 * 20 11 10 39 39 H 1.08998 * 109.74985 * 108.58885 * 21 5 3 40 40 H 1.08999 * 109.78488 * 347.88319 * 21 5 3 41 41 H 1.09006 * 109.54383 * 296.81925 * 22 2 1 42 42 H 1.09000 * 109.54322 * 57.08339 * 22 2 1 43 43 H 1.09000 * 109.52663 * 62.92481 * 23 22 2 44 44 H 1.09007 * 109.51986 * 183.11234 * 23 22 2 45 45 H 1.09000 * 109.48287 * 177.59416 * 24 23 22 46 46 H 1.09000 * 109.48201 * 297.62138 * 24 23 22 47 47 H 1.09004 * 109.46942 * 301.18627 * 26 25 24 48 48 H 1.09000 * 109.56744 * 181.10927 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0336 1.4204 0.0000 4 8 2.7449 1.8116 0.9010 5 7 1.6935 2.2558 -1.0014 6 6 0.9209 1.7786 -2.1590 7 6 -0.2945 2.6918 -2.3496 8 8 0.1437 4.0509 -2.4452 9 6 0.8485 4.5138 -1.2983 10 6 -0.0408 4.8068 -0.0892 11 7 -0.2099 6.1712 -0.6141 12 6 -1.1638 7.1495 -0.5254 13 1 -2.0602 6.9790 0.0524 14 6 -0.9816 8.3583 -1.1831 15 7 0.1106 8.5661 -1.8875 16 14 -2.2864 9.6901 -1.0683 17 1 -3.4093 9.2113 -0.2227 18 1 -1.6959 10.9108 -0.4631 19 1 -2.7916 10.0066 -2.4283 20 6 1.0931 6.0204 -1.2817 21 6 2.0842 3.6764 -0.9721 22 6 2.0419 -0.7246 1.2488 23 6 3.5716 -0.7850 1.1995 24 6 4.0057 -1.4794 -0.0940 25 8 3.4708 -0.7728 -1.2151 26 6 2.0417 -0.7243 -1.2479 27 1 -0.3633 0.6713 -0.7781 28 1 -0.3634 -1.0096 -0.1923 29 1 -0.3633 0.3381 0.9704 30 1 1.5446 1.8089 -3.0524 31 1 0.5859 0.7571 -1.9788 32 1 -0.8187 2.4136 -3.2639 33 1 -0.9665 2.5854 -1.4980 34 1 0.4920 4.7699 0.8610 35 1 -0.9644 4.2282 -0.0774 36 1 0.2378 9.4107 -2.3475 37 1 1.1256 6.4647 -2.2766 38 1 1.9372 6.3167 -0.6590 39 1 2.8603 3.8604 -1.7150 40 1 2.4543 3.9369 0.0194 41 1 1.7269 -0.1818 2.1401 42 1 1.6376 -1.7365 1.2746 43 1 3.9771 0.2265 1.2236 44 1 3.9418 -1.3474 2.0567 45 1 5.0940 -1.4871 -0.1549 46 1 3.6340 -2.5040 -0.0989 47 1 1.6441 -1.7390 -1.2679 48 1 1.7150 -0.1881 -2.1389 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053487033.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:37 Heat of formation + Delta-G solvation = -33.602937 kcal Electronic energy + Delta-G solvation = -30162.818656 eV Core-core repulsion = 26221.248362 eV Total energy + Delta-G solvation = -3941.570294 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.35388 -39.66621 -38.03997 -36.49101 -34.90432 -34.48545 -32.45373 -32.05611 -30.04678 -28.03346 -27.27464 -26.29778 -25.43826 -24.87249 -23.54847 -23.00834 -22.07052 -21.02851 -19.01107 -18.85055 -17.14020 -16.85637 -16.56988 -16.05360 -15.87397 -15.63770 -15.39711 -15.15005 -14.65327 -14.55630 -14.39750 -14.06406 -13.90562 -13.60417 -13.40680 -12.93840 -12.85816 -12.62177 -12.55942 -12.31365 -12.17374 -12.09311 -11.71764 -11.39196 -11.21657 -11.11163 -10.87742 -10.83892 -10.75598 -10.70796 -10.64195 -10.12077 -10.01578 -9.75815 -9.64481 -9.28081 -9.11619 -8.82342 -8.27147 -6.87098 -5.74363 -3.06386 2.65393 2.93085 3.41266 3.45763 3.48825 3.61137 4.04292 4.16237 4.30465 4.45818 4.50470 4.66001 4.80741 4.83473 4.86357 4.96239 5.06406 5.09652 5.15442 5.21163 5.22969 5.27016 5.32754 5.35089 5.42278 5.53858 5.55455 5.63178 5.71572 5.73179 5.75685 5.82770 5.92599 5.95644 6.07204 6.26593 6.32853 6.38426 6.50599 6.58897 6.90407 6.95366 7.18024 7.45063 7.51131 7.82550 7.99457 8.22968 9.04907 9.71987 10.62963 11.43579 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.028827 B = 0.003205 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.088704 B = 8734.386237 C = 8829.404095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.117 4.117 3 C 0.538 3.462 4 O -0.535 6.535 5 N -0.606 5.606 6 C 0.053 3.947 7 C 0.043 3.957 8 O -0.330 6.330 9 C 0.047 3.953 10 C 0.102 3.898 11 N -0.600 5.600 12 C -0.215 4.215 13 H 0.081 0.919 14 C -0.007 4.007 15 N -0.918 5.918 16 Si 0.914 3.086 17 H -0.280 1.280 18 H -0.290 1.290 19 H -0.290 1.290 20 C 0.174 3.826 21 C 0.105 3.895 22 C -0.093 4.093 23 C -0.168 4.168 24 C 0.059 3.941 25 O -0.376 6.376 26 C 0.058 3.942 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.054 0.946 34 H 0.040 0.960 35 H 0.039 0.961 36 H 0.253 0.747 37 H 0.083 0.917 38 H 0.043 0.957 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.098 0.902 44 H 0.070 0.930 45 H 0.092 0.908 46 H 0.047 0.953 47 H 0.061 0.939 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.765 -23.622 0.897 23.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.121 4.121 3 C 0.325 3.675 4 O -0.412 6.412 5 N -0.339 5.339 6 C -0.070 4.070 7 C -0.035 4.035 8 O -0.248 6.248 9 C 0.005 3.995 10 C -0.025 4.025 11 N -0.325 5.325 12 C -0.342 4.342 13 H 0.099 0.901 14 C -0.203 4.203 15 N -0.565 5.565 16 Si 0.744 3.256 17 H -0.205 1.205 18 H -0.217 1.217 19 H -0.217 1.217 20 C 0.048 3.952 21 C -0.018 4.018 22 C -0.131 4.131 23 C -0.205 4.205 24 C -0.017 4.017 25 O -0.294 6.294 26 C -0.019 4.019 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.092 0.908 40 H 0.119 0.881 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.116 0.884 44 H 0.089 0.911 45 H 0.110 0.890 46 H 0.065 0.935 47 H 0.079 0.921 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.060 -22.853 1.026 23.233 hybrid contribution -0.841 0.416 0.521 1.073 sum 3.219 -22.436 1.548 22.719 Atomic orbital electron populations 1.22158 0.91860 1.03227 1.04130 1.21477 0.97707 0.93807 0.99063 1.20101 0.79721 0.86500 0.81135 1.90613 1.37070 1.76998 1.36471 1.48085 1.54819 1.10196 1.20789 1.22995 0.94801 0.99618 0.89555 1.22928 0.94518 0.83531 1.02523 1.88041 1.73871 1.25213 1.37655 1.23307 0.91079 0.97120 0.88025 1.22864 0.96640 0.88464 0.94498 1.45348 1.18232 1.12242 1.56705 1.18923 0.96654 0.92024 1.26630 0.90108 1.24782 0.97833 0.97713 1.00016 1.69825 1.26204 1.24609 1.35891 0.86019 0.80528 0.81739 0.77300 1.20508 1.21729 1.21657 1.21943 0.88713 0.85063 0.99500 1.22151 0.97225 0.78537 1.03896 1.21415 0.95917 0.99427 0.96358 1.22399 0.96221 1.04214 0.97680 1.22636 0.99074 0.94117 0.85901 1.88014 1.19397 1.76528 1.45454 1.23149 0.82045 0.99765 0.96939 0.90555 0.91144 0.91216 0.90223 0.87704 0.88028 0.92807 0.94261 0.94265 0.93646 0.89865 0.93910 0.90826 0.88123 0.90595 0.91456 0.88350 0.91107 0.88961 0.93475 0.92068 0.87346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 8.11 37.16 0.30 -1.00 16 2 C -0.12 -1.21 0.50 -155.52 -0.08 -1.28 16 3 C 0.54 7.70 5.94 -10.99 -0.07 7.63 16 4 O -0.53 -9.36 13.33 5.56 0.07 -9.29 16 5 N -0.61 -8.61 3.02 -172.48 -0.52 -9.13 16 6 C 0.05 0.60 4.18 -3.59 -0.01 0.58 16 7 C 0.04 0.57 6.63 37.27 0.25 0.82 16 8 O -0.33 -6.35 10.53 -35.23 -0.37 -6.73 16 9 C 0.05 0.92 1.27 -90.95 -0.12 0.80 16 10 C 0.10 2.21 7.91 -8.21 -0.06 2.14 16 11 N -0.60 -15.92 3.79 -184.95 -0.70 -16.62 16 12 C -0.22 -6.20 10.74 -15.06 -0.16 -6.36 16 13 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 14 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 15 N -0.92 -27.66 11.52 55.49 0.64 -27.02 16 16 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 C 0.17 4.20 6.79 -8.35 -0.06 4.14 16 21 C 0.10 1.75 5.82 -3.68 -0.02 1.73 16 22 C -0.09 -0.92 4.44 -26.55 -0.12 -1.04 16 23 C -0.17 -1.73 5.81 -26.60 -0.15 -1.88 16 24 C 0.06 0.55 6.84 37.20 0.25 0.81 16 25 O -0.38 -4.33 10.45 -35.23 -0.37 -4.70 16 26 C 0.06 0.53 5.19 37.20 0.19 0.72 16 27 H 0.08 0.64 4.13 -51.93 -0.21 0.43 16 28 H 0.07 0.41 8.11 -51.92 -0.42 -0.01 16 29 H 0.07 0.63 8.11 -51.93 -0.42 0.21 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.11 0.87 2.77 -51.93 -0.14 0.72 16 32 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.05 0.73 6.70 -51.93 -0.35 0.38 16 34 H 0.04 0.85 7.93 -51.93 -0.41 0.43 16 35 H 0.04 0.82 7.36 -51.93 -0.38 0.44 16 36 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.08 2.25 7.16 -51.93 -0.37 1.87 16 38 H 0.04 1.02 8.09 -51.93 -0.42 0.60 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.10 1.79 6.94 -51.93 -0.36 1.43 16 41 H 0.08 0.84 8.03 -51.93 -0.42 0.42 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.10 1.34 5.78 -51.93 -0.30 1.04 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.11 0.90 4.65 -51.93 -0.24 0.66 16 LS Contribution 356.23 15.07 5.37 5.37 Total: -1.00 -34.72 356.23 -8.24 -42.96 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -7.38 Total: 0.16 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: 0.05 Total: 7.53 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.58 Total: -52.77 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.67 Total: -20.71 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.72 -8.24 -42.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053487033.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.354 kcal (2) G-P(sol) polarization free energy of solvation -34.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds