Wall clock time and date at job start Tue Mar 31 2020 13:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86791 * 120.00128 * 2 1 4 4 H 1.48498 * 109.47221 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47535 * 300.00490 * 3 2 1 6 6 H 1.48506 * 109.47053 * 60.00463 * 3 2 1 7 7 C 1.38815 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99945 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00064 * 359.97438 * 7 2 1 10 10 C 1.47718 * 134.43095 * 180.02562 * 9 7 2 11 11 C 1.53224 * 85.89569 * 155.83893 * 10 9 7 12 12 C 1.47714 * 134.43508 * 359.93987 * 9 7 2 13 13 C 1.53442 * 114.99594 * 139.51743 * 11 10 9 14 14 C 1.54990 * 103.84771 * 128.86203 * 13 11 10 15 15 C 1.55058 * 102.12533 * 339.14078 * 14 13 11 16 16 H 1.09003 * 110.58529 * 277.90374 * 15 14 13 17 17 C 1.52995 * 110.58954 * 155.13542 * 15 14 13 18 18 N 1.46500 * 109.46971 * 179.97438 * 17 15 14 19 19 C 1.34773 * 120.00326 * 179.97438 * 18 17 15 20 20 O 1.21284 * 119.99592 * 0.02562 * 19 18 17 21 21 C 1.50694 * 120.00444 * 179.97438 * 19 18 17 22 22 H 1.09004 * 109.52020 * 59.87697 * 21 19 18 23 23 C 1.53174 * 109.52737 * 180.02562 * 21 19 18 24 24 C 1.53176 * 109.04061 * 176.89098 * 23 21 19 25 25 C 1.53091 * 109.21206 * 302.98570 * 24 23 21 26 26 O 1.43035 * 109.34424 * 57.57779 * 25 24 23 27 27 C 1.42902 * 114.13534 * 298.88074 * 26 25 24 28 28 O 1.42972 * 115.33731 * 266.49079 * 11 10 9 29 29 H 0.96996 * 120.00122 * 359.97438 * 1 2 3 30 30 H 1.08998 * 113.80507 * 41.59519 * 10 9 7 31 31 H 1.09001 * 113.91008 * 270.09685 * 10 9 7 32 32 H 1.09006 * 113.80388 * 89.91966 * 12 9 7 33 33 H 1.09001 * 113.80708 * 318.41427 * 12 9 7 34 34 H 1.08994 * 110.55141 * 10.26955 * 13 11 10 35 35 H 1.09000 * 110.54968 * 247.45129 * 13 11 10 36 36 H 1.09004 * 110.87113 * 220.97834 * 14 13 11 37 37 H 1.09002 * 110.87179 * 97.30100 * 14 13 11 38 38 H 1.08997 * 109.47113 * 60.00105 * 17 15 14 39 39 H 1.08993 * 109.47535 * 299.99749 * 17 15 14 40 40 H 0.97002 * 120.00163 * 359.97438 * 18 17 15 41 41 H 1.08995 * 109.54500 * 57.01655 * 23 21 19 42 42 H 1.08999 * 109.54245 * 296.75722 * 23 21 19 43 43 H 1.09002 * 109.52410 * 62.92413 * 24 23 21 44 44 H 1.09004 * 109.52533 * 183.05059 * 24 23 21 45 45 H 1.09007 * 109.48127 * 177.62276 * 25 24 23 46 46 H 1.09000 * 109.48171 * 297.66002 * 25 24 23 47 47 H 1.08997 * 109.47976 * 301.17973 * 27 26 25 48 48 H 1.08994 * 109.48487 * 181.13995 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 1.7219 -3.8111 -0.0005 11 6 0.3492 -4.0797 0.6250 12 6 -0.1050 -2.7563 0.0010 13 6 -0.3710 -5.3274 0.0969 14 6 -0.7647 -6.1001 1.3815 15 6 0.2189 -5.5150 2.4278 16 1 1.1886 -6.0081 2.3599 17 6 -0.3543 -5.6505 3.8398 18 7 0.5933 -5.0917 4.8072 19 6 0.2984 -5.1012 6.1222 20 8 -0.7514 -5.5729 6.5048 21 6 1.2734 -4.5268 7.1174 22 1 1.4456 -3.4742 6.8927 23 6 0.7007 -4.6618 8.5316 24 6 1.7323 -4.1463 9.5398 25 6 3.0388 -4.9253 9.3667 26 8 3.5004 -4.7831 8.0204 27 6 2.5973 -5.2913 7.0363 28 8 0.3258 -4.1226 2.0539 29 1 -0.4850 0.8400 0.0004 30 1 2.5584 -4.0347 0.6615 31 1 1.8421 -4.2362 -0.9970 32 1 -0.5327 -2.8638 -0.9958 33 1 -0.7162 -2.1441 0.6642 34 1 0.3010 -5.9254 -0.5185 35 1 -1.2598 -5.0459 -0.4677 36 1 -0.6052 -7.1709 1.2548 37 1 -1.7975 -5.8904 1.6597 38 1 -0.5230 -6.7038 4.0639 39 1 -1.2987 -5.1101 3.9020 40 1 1.4332 -4.7147 4.5013 41 1 0.4813 -5.7093 8.7378 42 1 -0.2135 -4.0737 8.6125 43 1 1.9145 -3.0859 9.3647 44 1 1.3548 -4.2886 10.5524 45 1 3.7894 -4.5335 10.0533 46 1 2.8645 -5.9796 9.5814 47 1 2.4173 -6.3504 7.2206 48 1 3.0308 -5.1633 6.0445 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053582088.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:52 Heat of formation + Delta-G solvation = -77.752145 kcal Electronic energy + Delta-G solvation = -28304.035521 eV Core-core repulsion = 24360.550774 eV Total energy + Delta-G solvation = -3943.484747 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.49857 -39.83273 -38.64787 -36.46293 -34.52391 -33.81060 -32.12556 -31.99749 -31.57030 -29.22515 -26.96446 -25.30944 -24.98896 -24.75155 -23.60219 -21.62669 -21.24619 -20.96090 -19.91440 -19.03600 -17.51169 -16.80137 -16.61973 -16.48070 -16.20242 -15.80232 -15.29995 -15.07042 -14.64853 -14.49906 -14.32079 -14.04669 -13.80968 -13.53377 -13.34550 -13.21978 -13.01249 -12.75896 -12.46594 -12.30158 -11.81707 -11.65917 -11.41445 -11.40061 -11.28985 -11.17273 -11.11855 -11.00097 -10.82302 -10.67901 -10.42373 -10.08884 -9.98672 -9.68375 -9.65916 -9.54470 -9.09903 -8.91125 -8.77961 -6.85322 -5.73081 -3.04714 2.54776 3.06263 3.41303 3.46238 3.49086 3.56250 4.00208 4.35162 4.47234 4.54283 4.56311 4.64226 4.70530 4.82542 4.85095 4.99326 5.00399 5.09536 5.12718 5.23536 5.29183 5.38668 5.39096 5.47579 5.52676 5.55269 5.57055 5.62295 5.68006 5.69469 5.87011 5.90650 5.99448 6.02424 6.13853 6.25201 6.34126 6.38193 6.55850 6.66995 6.83393 6.92955 7.23249 7.44706 7.52266 7.72800 8.01835 8.14844 9.07559 9.74284 10.61877 11.44387 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.010808 B = 0.003304 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.010187 B = 8471.359117 C =10205.123036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.220 4.220 8 H 0.080 0.920 9 N -0.605 5.605 10 C 0.105 3.895 11 C 0.058 3.942 12 C 0.172 3.828 13 C -0.140 4.140 14 C -0.144 4.144 15 C 0.057 3.943 16 H 0.072 0.928 17 C 0.129 3.871 18 N -0.720 5.720 19 C 0.521 3.479 20 O -0.544 6.544 21 C -0.146 4.146 22 H 0.110 0.890 23 C -0.101 4.101 24 C -0.157 4.157 25 C 0.057 3.943 26 O -0.376 6.376 27 C 0.073 3.927 28 O -0.329 6.329 29 H 0.253 0.747 30 H 0.046 0.954 31 H 0.041 0.959 32 H 0.039 0.961 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.407 0.593 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.095 0.905 46 H 0.051 0.949 47 H 0.056 0.944 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.975 -15.532 13.248 20.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.347 4.347 8 H 0.097 0.903 9 N -0.331 5.331 10 C -0.021 4.021 11 C 0.017 3.983 12 C 0.047 3.953 13 C -0.178 4.178 14 C -0.182 4.182 15 C -0.001 4.001 16 H 0.090 0.910 17 C 0.005 3.995 18 N -0.372 5.372 19 C 0.307 3.693 20 O -0.421 6.421 21 C -0.167 4.167 22 H 0.128 0.872 23 C -0.139 4.139 24 C -0.195 4.195 25 C -0.020 4.020 26 O -0.294 6.294 27 C -0.004 4.004 28 O -0.248 6.248 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.242 0.758 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.113 0.887 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.449 -15.240 13.610 20.484 hybrid contribution 0.536 0.936 -0.470 1.176 sum 1.986 -14.305 13.140 19.525 Atomic orbital electron populations 1.69818 1.05002 1.25161 1.56809 1.24761 0.95657 0.97457 1.02541 0.86060 0.78726 0.83820 0.77241 1.20484 1.21798 1.21705 1.19025 0.90214 0.81887 1.43602 0.90264 1.45809 1.02076 0.99120 1.86066 1.23004 0.95165 0.87157 0.96811 1.23786 0.97164 0.96318 0.81016 1.22347 0.88677 0.87879 0.96445 1.22795 1.01186 0.96450 0.97413 1.23084 1.00059 0.99964 0.95106 1.23388 0.98162 0.85282 0.93286 0.91040 1.21427 0.93276 0.98980 0.85769 1.45978 1.23042 1.62030 1.06115 1.20374 0.87370 0.78719 0.82879 1.90687 1.25712 1.46295 1.79429 1.22035 0.95833 1.03028 0.95839 0.87231 1.21391 0.98342 1.02696 0.91478 1.22235 0.95930 1.01372 0.99960 1.22669 0.96224 0.99272 0.83821 1.88005 1.43514 1.82811 1.15093 1.22503 0.88237 0.96445 0.93233 1.88914 1.94114 1.21611 1.20121 0.93734 0.93614 0.94182 0.94357 0.90211 0.90802 0.90228 0.90512 0.90313 0.90385 0.90527 0.75782 0.90994 0.90587 0.90720 0.90453 0.88657 0.93055 0.92579 0.88183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.76 11.39 55.49 0.63 -27.13 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.22 -6.28 10.70 -15.06 -0.16 -6.44 16 8 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 9 N -0.60 -15.75 3.70 -181.60 -0.67 -16.43 16 10 C 0.11 2.14 8.34 -3.26 -0.03 2.12 16 11 C 0.06 1.09 1.53 -90.29 -0.14 0.95 16 12 C 0.17 4.09 6.90 -3.28 -0.02 4.07 16 13 C -0.14 -1.94 6.48 -25.45 -0.16 -2.10 16 14 C -0.14 -1.67 6.60 -24.59 -0.16 -1.83 16 15 C 0.06 0.75 3.39 -25.65 -0.09 0.66 16 16 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 17 C 0.13 1.62 5.42 -4.04 -0.02 1.60 16 18 N -0.72 -8.92 5.44 -60.30 -0.33 -9.25 16 19 C 0.52 6.82 7.16 -10.99 -0.08 6.74 16 20 O -0.54 -8.83 15.97 5.55 0.09 -8.74 16 21 C -0.15 -1.55 2.73 -91.63 -0.25 -1.80 16 22 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 23 C -0.10 -1.01 4.62 -26.55 -0.12 -1.13 16 24 C -0.16 -1.25 6.13 -26.59 -0.16 -1.42 16 25 C 0.06 0.45 6.86 37.20 0.26 0.71 16 26 O -0.38 -3.96 10.77 -35.23 -0.38 -4.34 16 27 C 0.07 0.70 6.01 37.21 0.22 0.92 16 28 O -0.33 -6.10 10.97 -35.23 -0.39 -6.49 16 29 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.04 0.76 8.06 -51.93 -0.42 0.34 16 32 H 0.04 0.90 8.10 -51.93 -0.42 0.48 16 33 H 0.08 2.17 7.18 -51.93 -0.37 1.79 16 34 H 0.07 0.91 7.89 -51.93 -0.41 0.50 16 35 H 0.08 1.08 7.93 -51.93 -0.41 0.67 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.90 8.05 -51.93 -0.42 0.48 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.41 4.69 7.96 -40.82 -0.32 4.36 16 41 H 0.07 0.74 8.02 -51.93 -0.42 0.32 16 42 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.10 0.62 8.14 -51.92 -0.42 0.20 16 46 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.10 0.86 7.66 -51.93 -0.40 0.46 16 LS Contribution 382.18 15.07 5.76 5.76 Total: -1.00 -34.59 382.18 -9.54 -44.13 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -8.21 Total: 2.29 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -1.02 Total: 2.72 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: -0.37 Total: -52.81 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.68 Total: -19.57 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.59 -9.54 -44.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053582088.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.625 kcal (2) G-P(sol) polarization free energy of solvation -34.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds