Wall clock time and date at job start Tue Mar 31 2020 13:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86791 * 120.00128 * 2 1 4 4 H 1.48498 * 109.47221 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47535 * 300.00490 * 3 2 1 6 6 H 1.48506 * 109.47053 * 60.00463 * 3 2 1 7 7 C 1.38815 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99945 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00064 * 359.97438 * 7 2 1 10 10 C 1.47718 * 134.43095 * 180.02562 * 9 7 2 11 11 C 1.53224 * 85.89569 * 155.83893 * 10 9 7 12 12 C 1.47714 * 134.43508 * 359.93987 * 9 7 2 13 13 C 1.53442 * 114.99594 * 139.51743 * 11 10 9 14 14 C 1.54990 * 103.84771 * 128.86203 * 13 11 10 15 15 C 1.55058 * 102.12533 * 339.14078 * 14 13 11 16 16 H 1.09003 * 110.58529 * 277.90374 * 15 14 13 17 17 C 1.52995 * 110.58954 * 155.13542 * 15 14 13 18 18 N 1.46500 * 109.46971 * 179.97438 * 17 15 14 19 19 C 1.34773 * 120.00326 * 179.97438 * 18 17 15 20 20 O 1.21284 * 119.99592 * 0.02562 * 19 18 17 21 21 C 1.50694 * 120.00444 * 179.97438 * 19 18 17 22 22 H 1.09004 * 109.52020 * 59.87697 * 21 19 18 23 23 C 1.53174 * 109.52737 * 180.02562 * 21 19 18 24 24 C 1.53176 * 109.04061 * 176.89098 * 23 21 19 25 25 C 1.53091 * 109.21206 * 302.98570 * 24 23 21 26 26 O 1.43035 * 109.34424 * 57.57779 * 25 24 23 27 27 C 1.42902 * 114.13534 * 298.88074 * 26 25 24 28 28 O 1.42972 * 115.33731 * 266.49079 * 11 10 9 29 29 H 0.96996 * 120.00122 * 359.97438 * 1 2 3 30 30 H 1.08998 * 113.80507 * 41.59519 * 10 9 7 31 31 H 1.09001 * 113.91008 * 270.09685 * 10 9 7 32 32 H 1.09006 * 113.80388 * 89.91966 * 12 9 7 33 33 H 1.09001 * 113.80708 * 318.41427 * 12 9 7 34 34 H 1.08994 * 110.55141 * 10.26955 * 13 11 10 35 35 H 1.09000 * 110.54968 * 247.45129 * 13 11 10 36 36 H 1.09004 * 110.87113 * 220.97834 * 14 13 11 37 37 H 1.09002 * 110.87179 * 97.30100 * 14 13 11 38 38 H 1.08997 * 109.47113 * 60.00105 * 17 15 14 39 39 H 1.08993 * 109.47535 * 299.99749 * 17 15 14 40 40 H 0.97002 * 120.00163 * 359.97438 * 18 17 15 41 41 H 1.08995 * 109.54500 * 57.01655 * 23 21 19 42 42 H 1.08999 * 109.54245 * 296.75722 * 23 21 19 43 43 H 1.09002 * 109.52410 * 62.92413 * 24 23 21 44 44 H 1.09004 * 109.52533 * 183.05059 * 24 23 21 45 45 H 1.09007 * 109.48127 * 177.62276 * 25 24 23 46 46 H 1.09000 * 109.48171 * 297.66002 * 25 24 23 47 47 H 1.08997 * 109.47976 * 301.17973 * 27 26 25 48 48 H 1.08994 * 109.48487 * 181.13995 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 1.7219 -3.8111 -0.0005 11 6 0.3492 -4.0797 0.6250 12 6 -0.1050 -2.7563 0.0010 13 6 -0.3710 -5.3274 0.0969 14 6 -0.7647 -6.1001 1.3815 15 6 0.2189 -5.5150 2.4278 16 1 1.1886 -6.0081 2.3599 17 6 -0.3543 -5.6505 3.8398 18 7 0.5933 -5.0917 4.8072 19 6 0.2984 -5.1012 6.1222 20 8 -0.7514 -5.5729 6.5048 21 6 1.2734 -4.5268 7.1174 22 1 1.4456 -3.4742 6.8927 23 6 0.7007 -4.6618 8.5316 24 6 1.7323 -4.1463 9.5398 25 6 3.0388 -4.9253 9.3667 26 8 3.5004 -4.7831 8.0204 27 6 2.5973 -5.2913 7.0363 28 8 0.3258 -4.1226 2.0539 29 1 -0.4850 0.8400 0.0004 30 1 2.5584 -4.0347 0.6615 31 1 1.8421 -4.2362 -0.9970 32 1 -0.5327 -2.8638 -0.9958 33 1 -0.7162 -2.1441 0.6642 34 1 0.3010 -5.9254 -0.5185 35 1 -1.2598 -5.0459 -0.4677 36 1 -0.6052 -7.1709 1.2548 37 1 -1.7975 -5.8904 1.6597 38 1 -0.5230 -6.7038 4.0639 39 1 -1.2987 -5.1101 3.9020 40 1 1.4332 -4.7147 4.5013 41 1 0.4813 -5.7093 8.7378 42 1 -0.2135 -4.0737 8.6125 43 1 1.9145 -3.0859 9.3647 44 1 1.3548 -4.2886 10.5524 45 1 3.7894 -4.5335 10.0533 46 1 2.8645 -5.9796 9.5814 47 1 2.4173 -6.3504 7.2206 48 1 3.0308 -5.1633 6.0445 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053582088.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:51 Heat of formation + Delta-G solvation = -103.008109 kcal Electronic energy + Delta-G solvation = -28305.130702 eV Core-core repulsion = 24360.550774 eV Total energy + Delta-G solvation = -3944.579928 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.53271 -41.11869 -39.55097 -37.97720 -35.71910 -34.63264 -34.09650 -33.09626 -32.49209 -30.58774 -28.64353 -26.73478 -26.15331 -25.73784 -24.79420 -23.14289 -22.31799 -21.87882 -20.83638 -20.57128 -18.73907 -18.45849 -17.73011 -17.35441 -17.16528 -16.95727 -16.67098 -16.18931 -16.07885 -15.72024 -15.49317 -15.32048 -14.89865 -14.85430 -14.61294 -14.40665 -14.11641 -14.01165 -13.60667 -13.41709 -13.19687 -12.99667 -12.82702 -12.66201 -12.60594 -12.50312 -12.27184 -12.16211 -12.11025 -11.91403 -11.61844 -11.40014 -11.38078 -11.23168 -10.97004 -10.91731 -10.52363 -10.35447 -10.15273 -8.91386 -7.90158 -5.22483 1.43312 1.44965 1.50701 1.55006 2.09392 2.46719 2.76016 2.88058 3.30071 3.40161 3.53718 3.60537 3.71609 3.76159 3.78850 3.84004 3.95791 4.06024 4.12388 4.16782 4.23074 4.42609 4.46889 4.53038 4.59815 4.61149 4.67980 4.75435 4.78450 4.82819 4.88507 4.91466 4.99140 5.01709 5.04781 5.10043 5.13897 5.18794 5.26936 5.27983 5.36593 5.38282 5.52448 5.93375 6.14572 6.28564 6.43822 6.91589 7.12208 7.61287 8.56596 9.27210 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.010808 B = 0.003304 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.010187 B = 8471.359117 C =10205.123036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.070 4.070 3 Si 0.978 3.022 4 H -0.263 1.263 5 H -0.291 1.291 6 H -0.294 1.294 7 C -0.230 4.230 8 H 0.083 0.917 9 N -0.639 5.639 10 C 0.106 3.894 11 C 0.080 3.920 12 C 0.163 3.837 13 C -0.133 4.133 14 C -0.134 4.134 15 C 0.057 3.943 16 H 0.095 0.905 17 C 0.131 3.869 18 N -0.717 5.717 19 C 0.520 3.480 20 O -0.578 6.578 21 C -0.142 4.142 22 H 0.105 0.895 23 C -0.101 4.101 24 C -0.151 4.151 25 C 0.051 3.949 26 O -0.393 6.393 27 C 0.077 3.923 28 O -0.365 6.365 29 H 0.246 0.754 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.035 0.965 33 H 0.033 0.967 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.116 0.884 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.052 0.948 40 H 0.412 0.588 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.096 0.904 45 H 0.112 0.888 46 H 0.062 0.938 47 H 0.064 0.936 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.511 -17.734 13.619 22.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.806 3.194 4 H -0.187 1.187 5 H -0.218 1.218 6 H -0.222 1.222 7 C -0.359 4.359 8 H 0.101 0.899 9 N -0.365 5.365 10 C -0.018 4.018 11 C 0.039 3.961 12 C 0.038 3.962 13 C -0.172 4.172 14 C -0.172 4.172 15 C -0.001 4.001 16 H 0.113 0.887 17 C 0.008 3.992 18 N -0.368 5.368 19 C 0.307 3.693 20 O -0.458 6.458 21 C -0.163 4.163 22 H 0.123 0.877 23 C -0.139 4.139 24 C -0.189 4.189 25 C -0.025 4.025 26 O -0.312 6.312 27 C 0.000 4.000 28 O -0.284 6.284 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.119 0.881 35 H 0.099 0.901 36 H 0.134 0.866 37 H 0.095 0.905 38 H 0.119 0.881 39 H 0.071 0.929 40 H 0.248 0.752 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.114 0.886 45 H 0.130 0.870 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.021 -17.484 13.972 22.584 hybrid contribution 0.054 1.576 -0.553 1.671 sum 3.075 -15.908 13.419 21.037 Atomic orbital electron populations 1.70028 1.06521 1.25338 1.58557 1.25622 0.96539 1.00888 1.03222 0.85018 0.78296 0.79438 0.76660 1.18735 1.21803 1.22160 1.19443 0.90771 0.83451 1.42212 0.89909 1.46223 1.03351 1.00688 1.86239 1.23222 0.96456 0.83948 0.98210 1.23331 0.95752 0.95636 0.81408 1.22286 0.87407 0.90615 0.95915 1.22770 1.01231 0.94454 0.98707 1.23104 0.99457 1.01810 0.92822 1.23654 0.99903 0.82832 0.93677 0.88721 1.21436 0.92214 0.99824 0.85750 1.46017 1.23133 1.61621 1.06035 1.20771 0.87197 0.78055 0.83286 1.90667 1.27201 1.47996 1.79975 1.22033 0.96039 1.02711 0.95530 0.87672 1.21388 0.98443 1.02350 0.91732 1.22211 0.95454 1.00938 1.00280 1.22870 0.96519 1.00072 0.83013 1.87984 1.43981 1.83050 1.16200 1.22513 0.87313 0.96523 0.93682 1.88878 1.94194 1.25454 1.19913 0.94472 0.92842 0.91803 0.94728 0.94862 0.88062 0.90142 0.86555 0.90469 0.88148 0.92915 0.75228 0.91296 0.91992 0.91212 0.88572 0.86983 0.91983 0.91786 0.87393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.91 11.39 21.65 0.25 -59.66 16 2 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 3 Si 0.98 47.19 29.55 68.60 2.03 49.21 16 4 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 6 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 7 C -0.23 -13.36 10.70 84.03 0.90 -12.46 16 8 H 0.08 4.58 7.83 -2.91 -0.02 4.56 16 9 N -0.64 -33.68 3.70 -733.88 -2.72 -36.40 16 10 C 0.11 4.19 8.34 86.22 0.72 4.91 16 11 C 0.08 2.90 1.53 -10.46 -0.02 2.89 16 12 C 0.16 8.01 6.90 86.21 0.59 8.60 16 13 C -0.13 -3.30 6.48 31.42 0.20 -3.10 16 14 C -0.13 -2.63 6.60 31.98 0.21 -2.42 16 15 C 0.06 1.34 3.39 31.30 0.11 1.45 16 16 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 17 C 0.13 3.11 5.42 86.38 0.47 3.58 16 18 N -0.72 -17.18 5.44 -463.09 -2.52 -19.70 16 19 C 0.52 13.48 7.16 87.66 0.63 14.10 16 20 O -0.58 -18.85 15.97 -3.04 -0.05 -18.89 16 21 C -0.14 -2.96 2.73 -11.45 -0.03 -2.99 16 22 H 0.11 2.29 8.14 -2.38 -0.02 2.27 16 23 C -0.10 -1.98 4.62 30.71 0.14 -1.83 16 24 C -0.15 -2.21 6.13 30.68 0.19 -2.02 16 25 C 0.05 0.72 6.86 72.01 0.49 1.22 16 26 O -0.39 -7.67 10.77 -148.98 -1.60 -9.28 16 27 C 0.08 1.36 6.01 72.01 0.43 1.79 16 28 O -0.37 -13.32 10.97 -148.98 -1.63 -14.95 16 29 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 30 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 31 H 0.06 2.24 8.06 -2.39 -0.02 2.22 16 32 H 0.04 1.69 8.10 -2.38 -0.02 1.67 16 33 H 0.03 1.91 7.18 -2.39 -0.02 1.89 16 34 H 0.10 2.01 7.89 -2.39 -0.02 1.99 16 35 H 0.08 2.01 7.93 -2.39 -0.02 2.00 16 36 H 0.12 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.08 1.57 8.05 -2.39 -0.02 1.55 16 38 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.41 9.09 7.96 -92.71 -0.74 8.35 16 41 H 0.07 1.38 8.02 -2.39 -0.02 1.36 16 42 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 45 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 46 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.11 1.69 7.66 -2.39 -0.02 1.67 16 Total: -1.00 -78.18 382.18 -0.54 -78.72 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: 0.21 Total: 20.90 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 5.50 Total: 10.05 kcal Atomic # 7 Polarization: -110.78 SS G_CDS: -4.99 Total: -115.77 kcal Atomic # 8 Polarization: -39.84 SS G_CDS: -3.29 Total: -43.13 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.21 kcal Total: -78.18 -0.54 -78.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053582088.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.284 kcal (2) G-P(sol) polarization free energy of solvation -78.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds