Wall clock time and date at job start Tue Mar 31 2020 13:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99577 * 2 1 4 4 H 1.48494 * 109.47329 * 269.99986 * 3 2 1 5 5 H 1.48506 * 109.46853 * 149.99732 * 3 2 1 6 6 H 1.48499 * 109.47249 * 30.00208 * 3 2 1 7 7 C 1.38811 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00153 * 337.63974 * 7 2 1 9 9 N 1.36937 * 119.99981 * 157.63981 * 7 2 1 10 10 C 1.47282 * 135.93215 * 349.54128 * 9 7 2 11 11 C 1.52629 * 87.60923 * 153.90155 * 10 9 7 12 12 C 1.47272 * 135.93768 * 169.91242 * 9 7 2 13 13 C 1.53880 * 115.57821 * 141.35652 * 11 10 9 14 14 C 1.55510 * 100.75777 * 166.92889 * 13 11 10 15 15 C 1.54473 * 102.38267 * 327.02750 * 14 13 11 16 16 H 1.09007 * 109.83110 * 261.85753 * 15 14 13 17 17 C 1.53002 * 109.90874 * 140.92709 * 15 14 13 18 18 N 1.46504 * 109.47272 * 180.37474 * 17 15 14 19 19 C 1.34773 * 119.99745 * 179.97438 * 18 17 15 20 20 O 1.21275 * 120.00520 * 359.97438 * 19 18 17 21 21 C 1.50700 * 119.99449 * 180.02562 * 19 18 17 22 22 H 1.08997 * 109.48126 * 304.99399 * 21 19 18 23 23 C 1.53087 * 109.48381 * 65.02636 * 21 19 18 24 24 C 1.53173 * 109.16560 * 177.58858 * 23 21 19 25 25 C 1.53174 * 109.03775 * 303.01585 * 24 23 21 26 26 C 1.53095 * 109.16174 * 56.97912 * 25 24 23 27 27 O 1.42898 * 109.42475 * 302.39953 * 26 25 24 28 28 O 1.42402 * 116.98244 * 268.27341 * 11 10 9 29 29 H 0.97002 * 119.99431 * 183.45450 * 1 2 3 30 30 H 1.09000 * 113.51408 * 268.56381 * 10 9 7 31 31 H 1.09000 * 113.51365 * 39.15076 * 10 9 7 32 32 H 1.09000 * 113.50945 * 320.84630 * 12 9 7 33 33 H 1.08995 * 113.51404 * 91.36675 * 12 9 7 34 34 H 1.08996 * 111.15790 * 284.79940 * 13 11 10 35 35 H 1.08999 * 111.16080 * 49.04928 * 13 11 10 36 36 H 1.08998 * 110.82271 * 208.80585 * 14 13 11 37 37 H 1.09002 * 110.99582 * 85.32789 * 14 13 11 38 38 H 1.09004 * 109.46757 * 300.37334 * 17 15 14 39 39 H 1.08995 * 109.47484 * 60.37268 * 17 15 14 40 40 H 0.96998 * 119.99615 * 359.97438 * 18 17 15 41 41 H 1.09005 * 109.51841 * 297.49431 * 23 21 19 42 42 H 1.09000 * 109.52703 * 57.67997 * 23 21 19 43 43 H 1.09000 * 109.54486 * 62.88594 * 24 23 21 44 44 H 1.08999 * 109.54803 * 183.05773 * 24 23 21 45 45 H 1.09001 * 109.52585 * 176.88296 * 25 24 23 46 46 H 1.08995 * 109.52616 * 297.01094 * 25 24 23 47 47 H 1.09004 * 109.48133 * 62.37960 * 26 25 24 48 48 H 1.09004 * 109.48032 * 182.40419 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 3.5477 1.4403 0.7001 6 1 1.4475 2.6527 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.5313 -2.1024 0.3549 9 7 3.3024 -1.2465 -0.4517 10 6 4.2069 -0.3275 -1.1635 11 6 5.3704 -1.0690 -0.5107 12 6 4.3930 -2.2362 -0.4431 13 6 6.6054 -1.2843 -1.4030 14 6 7.6552 -1.7259 -0.3440 15 6 7.2242 -0.9241 0.9040 16 1 7.8361 -0.0268 0.9965 17 6 7.3780 -1.7883 2.1572 18 7 6.9585 -1.0221 3.3333 19 6 7.0076 -1.5850 4.5569 20 8 7.3986 -2.7259 4.6843 21 6 6.5756 -0.7970 5.7666 22 1 7.1364 0.1366 5.8116 23 6 5.0791 -0.4896 5.6680 24 6 4.6353 0.2586 6.9287 25 6 4.9747 -0.5893 8.1585 26 6 6.4753 -0.8929 8.1609 27 8 6.8269 -1.5612 6.9478 28 8 5.8468 -0.5586 0.7304 29 1 -0.4849 -0.8386 0.0506 30 1 4.1743 -0.4380 -2.2474 31 1 4.1149 0.7097 -0.8413 32 1 4.4575 -2.8041 0.4850 33 1 4.4107 -2.8714 -1.3286 34 1 6.4294 -2.0724 -2.1349 35 1 6.9049 -0.3567 -1.8908 36 1 8.6614 -1.4462 -0.6558 37 1 7.5933 -2.7979 -0.1563 38 1 6.7563 -2.6787 2.0630 39 1 8.4211 -2.0838 2.2692 40 1 6.6454 -0.1097 3.2314 41 1 4.8917 0.1305 4.7914 42 1 4.5206 -1.4217 5.5821 43 1 5.1574 1.2135 6.9888 44 1 3.5601 0.4329 6.8899 45 1 4.7127 -0.0404 9.0630 46 1 4.4134 -1.5229 8.1235 47 1 7.0347 0.0395 8.2375 48 1 6.7155 -1.5317 9.0108 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053590136.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:20 Heat of formation + Delta-G solvation = -64.650051 kcal Electronic energy + Delta-G solvation = -28922.824897 eV Core-core repulsion = 24979.908300 eV Total energy + Delta-G solvation = -3942.916598 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.51335 -40.09291 -38.49841 -36.83872 -34.58258 -33.74188 -32.38528 -32.18740 -31.66266 -29.49529 -27.21492 -25.72711 -25.38967 -24.13792 -23.59070 -21.58269 -21.17178 -20.72303 -20.24123 -19.21889 -17.63982 -17.41995 -16.83209 -16.64125 -15.88981 -15.74851 -15.44506 -15.16107 -14.76692 -14.63055 -14.41647 -14.10423 -13.89090 -13.67222 -13.39262 -13.03846 -12.98051 -12.85079 -12.77605 -12.49686 -12.13504 -11.70519 -11.66440 -11.59375 -11.43515 -11.33655 -11.23669 -10.92138 -10.73057 -10.65882 -10.45149 -10.34797 -9.78096 -9.57805 -9.42814 -9.31977 -9.07378 -8.88922 -8.58030 -7.14144 -6.32646 -3.17079 2.59718 2.76764 3.42414 3.54757 3.71154 3.73090 3.96336 4.44092 4.50983 4.60237 4.61510 4.62940 4.63740 4.73080 4.74547 4.83233 4.89650 4.92495 4.99571 5.14467 5.18980 5.32507 5.35849 5.44223 5.48387 5.53429 5.56680 5.58757 5.70500 5.72064 5.86009 5.87857 5.89453 5.94895 6.06874 6.09194 6.18076 6.23723 6.32545 6.38464 6.41849 6.52488 6.89939 7.17514 7.44709 7.49673 8.21628 8.28137 8.99314 9.54865 10.42147 11.18729 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.010818 B = 0.004257 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.736991 B = 6576.344585 C = 8441.597168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.018 4.018 3 Si 1.058 2.942 4 H -0.295 1.295 5 H -0.276 1.276 6 H -0.297 1.297 7 C -0.308 4.308 8 H 0.077 0.923 9 N -0.616 5.616 10 C 0.109 3.891 11 C 0.070 3.930 12 C 0.108 3.892 13 C -0.138 4.138 14 C -0.143 4.143 15 C 0.063 3.937 16 H 0.085 0.915 17 C 0.115 3.885 18 N -0.717 5.717 19 C 0.521 3.479 20 O -0.526 6.526 21 C 0.077 3.923 22 H 0.082 0.918 23 C -0.149 4.149 24 C -0.121 4.121 25 C -0.159 4.159 26 C 0.060 3.940 27 O -0.356 6.356 28 O -0.332 6.332 29 H 0.261 0.739 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.406 0.594 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.051 0.949 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.371 1.674 8.536 20.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.218 4.218 3 Si 0.890 3.110 4 H -0.223 1.223 5 H -0.202 1.202 6 H -0.225 1.225 7 C -0.434 4.434 8 H 0.095 0.905 9 N -0.344 5.344 10 C -0.017 4.017 11 C 0.029 3.971 12 C -0.019 4.019 13 C -0.177 4.177 14 C -0.182 4.182 15 C 0.005 3.995 16 H 0.102 0.898 17 C -0.009 4.009 18 N -0.371 5.371 19 C 0.305 3.695 20 O -0.401 6.401 21 C 0.016 3.984 22 H 0.099 0.901 23 C -0.187 4.187 24 C -0.158 4.158 25 C -0.197 4.197 26 C -0.016 4.016 27 O -0.274 6.274 28 O -0.250 6.250 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.241 0.759 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.069 0.931 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 18.141 2.397 8.852 20.327 hybrid contribution -0.109 -1.126 -0.156 1.142 sum 18.032 1.271 8.697 20.060 Atomic orbital electron populations 1.70942 1.05667 1.29516 1.50439 1.25720 0.96190 1.00817 0.99109 0.83866 0.74829 0.75800 0.76509 1.22298 1.20247 1.22496 1.19948 0.85011 0.96527 1.41935 0.90508 1.45745 1.10758 1.13421 1.64480 1.22764 0.86790 0.96483 0.95644 1.23150 0.92504 0.97519 0.83909 1.22725 0.86825 0.93106 0.99238 1.23001 0.94377 1.02414 0.97918 1.23061 0.99919 1.01015 0.94158 1.23096 0.85096 0.97312 0.94011 0.89756 1.21794 1.00356 0.95179 0.83525 1.45733 1.67335 1.18176 1.05818 1.20117 0.78103 0.87276 0.83967 1.90705 1.45666 1.17814 1.85896 1.21863 0.96694 0.94111 0.85736 0.90060 1.22165 0.94271 1.02604 0.99617 1.21581 1.02324 0.98246 0.93679 1.22225 0.97338 1.01315 0.98804 1.22651 0.94393 0.97593 0.86998 1.88047 1.84734 1.41976 1.12623 1.88376 1.23470 1.74972 1.38177 0.92834 0.92794 0.92756 0.93385 0.93492 0.89537 0.90176 0.89972 0.90057 0.90803 0.90620 0.75938 0.89627 0.90120 0.91573 0.90602 0.90704 0.90753 0.93109 0.88478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.37 13.71 55.49 0.76 -28.61 16 2 C -0.02 -0.55 5.50 -17.43 -0.10 -0.65 16 3 Si 1.06 26.93 25.32 -169.99 -4.30 22.63 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 5 H -0.28 -6.68 6.54 56.52 0.37 -6.31 16 6 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 7 C -0.31 -9.08 10.96 -15.06 -0.17 -9.24 16 8 H 0.08 2.40 8.06 -52.49 -0.42 1.97 16 9 N -0.62 -15.49 3.57 -184.79 -0.66 -16.14 16 10 C 0.11 2.30 6.75 -7.74 -0.05 2.25 16 11 C 0.07 1.21 1.56 -90.68 -0.14 1.07 16 12 C 0.11 2.16 8.24 -7.87 -0.06 2.10 16 13 C -0.14 -1.68 6.49 -24.94 -0.16 -1.84 16 14 C -0.14 -1.45 6.56 -24.62 -0.16 -1.61 16 15 C 0.06 0.77 3.61 -25.96 -0.09 0.67 16 16 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 17 C 0.12 1.46 5.24 -4.04 -0.02 1.44 16 18 N -0.72 -9.33 5.43 -60.29 -0.33 -9.66 16 19 C 0.52 7.74 7.18 -10.99 -0.08 7.66 16 20 O -0.53 -9.90 16.51 -14.29 -0.24 -10.14 16 21 C 0.08 0.95 3.05 -27.84 -0.09 0.86 16 22 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 23 C -0.15 -1.76 5.37 -26.60 -0.14 -1.90 16 24 C -0.12 -1.16 6.03 -26.55 -0.16 -1.32 16 25 C -0.16 -1.41 6.14 -26.59 -0.16 -1.58 16 26 C 0.06 0.57 6.84 37.21 0.25 0.82 16 27 O -0.36 -4.84 9.94 -55.09 -0.55 -5.38 16 28 O -0.33 -5.71 10.69 -35.23 -0.38 -6.08 16 29 H 0.26 8.22 8.73 -40.82 -0.36 7.87 16 30 H 0.05 1.05 8.13 -51.93 -0.42 0.63 16 31 H 0.05 1.22 3.73 -51.93 -0.19 1.02 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.86 7.99 -51.93 -0.41 0.45 16 34 H 0.09 0.95 7.93 -51.93 -0.41 0.53 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.80 7.85 -51.93 -0.41 0.39 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.41 4.69 8.25 -40.82 -0.34 4.35 16 41 H 0.09 1.00 7.99 -51.93 -0.41 0.58 16 42 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 378.09 15.07 5.70 5.70 Total: -1.00 -36.98 378.09 -9.45 -46.44 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -8.13 Total: 2.52 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -1.33 Total: -1.26 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.23 Total: -54.42 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -1.16 Total: -21.61 kcal Atomic # 14 Polarization: 26.93 SS G_CDS: -4.30 Total: 22.63 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.98 -9.45 -46.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053590136.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.212 kcal (2) G-P(sol) polarization free energy of solvation -36.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds