Wall clock time and date at job start Tue Mar 31 2020 13:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99577 * 2 1 4 4 H 1.48494 * 109.47329 * 269.99986 * 3 2 1 5 5 H 1.48506 * 109.46853 * 149.99732 * 3 2 1 6 6 H 1.48499 * 109.47249 * 30.00208 * 3 2 1 7 7 C 1.38811 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00153 * 337.63974 * 7 2 1 9 9 N 1.36937 * 119.99981 * 157.63981 * 7 2 1 10 10 C 1.47282 * 135.93215 * 349.54128 * 9 7 2 11 11 C 1.52629 * 87.60923 * 153.90155 * 10 9 7 12 12 C 1.47272 * 135.93768 * 169.91242 * 9 7 2 13 13 C 1.53880 * 115.57821 * 141.35652 * 11 10 9 14 14 C 1.55510 * 100.75777 * 166.92889 * 13 11 10 15 15 C 1.54473 * 102.38267 * 327.02750 * 14 13 11 16 16 H 1.09007 * 109.83110 * 261.85753 * 15 14 13 17 17 C 1.53002 * 109.90874 * 140.92709 * 15 14 13 18 18 N 1.46504 * 109.47272 * 180.37474 * 17 15 14 19 19 C 1.34773 * 119.99745 * 179.97438 * 18 17 15 20 20 O 1.21275 * 120.00520 * 359.97438 * 19 18 17 21 21 C 1.50700 * 119.99449 * 180.02562 * 19 18 17 22 22 H 1.08997 * 109.48126 * 304.99399 * 21 19 18 23 23 C 1.53087 * 109.48381 * 65.02636 * 21 19 18 24 24 C 1.53173 * 109.16560 * 177.58858 * 23 21 19 25 25 C 1.53174 * 109.03775 * 303.01585 * 24 23 21 26 26 C 1.53095 * 109.16174 * 56.97912 * 25 24 23 27 27 O 1.42898 * 109.42475 * 302.39953 * 26 25 24 28 28 O 1.42402 * 116.98244 * 268.27341 * 11 10 9 29 29 H 0.97002 * 119.99431 * 183.45450 * 1 2 3 30 30 H 1.09000 * 113.51408 * 268.56381 * 10 9 7 31 31 H 1.09000 * 113.51365 * 39.15076 * 10 9 7 32 32 H 1.09000 * 113.50945 * 320.84630 * 12 9 7 33 33 H 1.08995 * 113.51404 * 91.36675 * 12 9 7 34 34 H 1.08996 * 111.15790 * 284.79940 * 13 11 10 35 35 H 1.08999 * 111.16080 * 49.04928 * 13 11 10 36 36 H 1.08998 * 110.82271 * 208.80585 * 14 13 11 37 37 H 1.09002 * 110.99582 * 85.32789 * 14 13 11 38 38 H 1.09004 * 109.46757 * 300.37334 * 17 15 14 39 39 H 1.08995 * 109.47484 * 60.37268 * 17 15 14 40 40 H 0.96998 * 119.99615 * 359.97438 * 18 17 15 41 41 H 1.09005 * 109.51841 * 297.49431 * 23 21 19 42 42 H 1.09000 * 109.52703 * 57.67997 * 23 21 19 43 43 H 1.09000 * 109.54486 * 62.88594 * 24 23 21 44 44 H 1.08999 * 109.54803 * 183.05773 * 24 23 21 45 45 H 1.09001 * 109.52585 * 176.88296 * 25 24 23 46 46 H 1.08995 * 109.52616 * 297.01094 * 25 24 23 47 47 H 1.09004 * 109.48133 * 62.37960 * 26 25 24 48 48 H 1.09004 * 109.48032 * 182.40419 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 3.5477 1.4403 0.7001 6 1 1.4475 2.6527 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.5313 -2.1024 0.3549 9 7 3.3024 -1.2465 -0.4517 10 6 4.2069 -0.3275 -1.1635 11 6 5.3704 -1.0690 -0.5107 12 6 4.3930 -2.2362 -0.4431 13 6 6.6054 -1.2843 -1.4030 14 6 7.6552 -1.7259 -0.3440 15 6 7.2242 -0.9241 0.9040 16 1 7.8361 -0.0268 0.9965 17 6 7.3780 -1.7883 2.1572 18 7 6.9585 -1.0221 3.3333 19 6 7.0076 -1.5850 4.5569 20 8 7.3986 -2.7259 4.6843 21 6 6.5756 -0.7970 5.7666 22 1 7.1364 0.1366 5.8116 23 6 5.0791 -0.4896 5.6680 24 6 4.6353 0.2586 6.9287 25 6 4.9747 -0.5893 8.1585 26 6 6.4753 -0.8929 8.1609 27 8 6.8269 -1.5612 6.9478 28 8 5.8468 -0.5586 0.7304 29 1 -0.4849 -0.8386 0.0506 30 1 4.1743 -0.4380 -2.2474 31 1 4.1149 0.7097 -0.8413 32 1 4.4575 -2.8041 0.4850 33 1 4.4107 -2.8714 -1.3286 34 1 6.4294 -2.0724 -2.1349 35 1 6.9049 -0.3567 -1.8908 36 1 8.6614 -1.4462 -0.6558 37 1 7.5933 -2.7979 -0.1563 38 1 6.7563 -2.6787 2.0630 39 1 8.4211 -2.0838 2.2692 40 1 6.6454 -0.1097 3.2314 41 1 4.8917 0.1305 4.7914 42 1 4.5206 -1.4217 5.5821 43 1 5.1574 1.2135 6.9888 44 1 3.5601 0.4329 6.8899 45 1 4.7127 -0.0404 9.0630 46 1 4.4134 -1.5229 8.1235 47 1 7.0347 0.0395 8.2375 48 1 6.7155 -1.5317 9.0108 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053590136.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:19 Heat of formation + Delta-G solvation = -92.721840 kcal Electronic energy + Delta-G solvation = -28924.042181 eV Core-core repulsion = 24979.908300 eV Total energy + Delta-G solvation = -3944.133882 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.71251 -41.22569 -39.54029 -38.28382 -35.78962 -34.67090 -34.46699 -33.23023 -32.62315 -30.83086 -28.79281 -27.10588 -26.68717 -25.06782 -24.74112 -22.87475 -22.54948 -21.67588 -21.19887 -20.69247 -19.52455 -18.65852 -17.85632 -17.66794 -17.44323 -16.77442 -16.49672 -16.28304 -16.10136 -15.72442 -15.57707 -15.46800 -15.34889 -15.01187 -14.72770 -14.57193 -14.15540 -13.81240 -13.73075 -13.65724 -13.42926 -13.18503 -12.76485 -12.63813 -12.59876 -12.48543 -12.34892 -12.21709 -12.01235 -12.00076 -11.55604 -11.44925 -11.37698 -11.07371 -10.81505 -10.74281 -10.54026 -10.35025 -10.18085 -9.22610 -8.69447 -5.44701 1.37565 1.45195 1.52431 1.72901 1.79550 2.52323 2.61115 2.91447 3.02204 3.27878 3.43248 3.55838 3.66954 3.70807 3.76703 3.82598 3.86418 3.96507 3.99128 4.13901 4.19264 4.38546 4.43986 4.47253 4.53933 4.57812 4.61393 4.62879 4.71974 4.74220 4.79389 4.82675 4.89140 4.95469 4.97138 5.02980 5.03632 5.11479 5.14913 5.24467 5.29147 5.31747 5.35536 5.94487 6.05791 6.24398 6.45210 6.67695 7.11515 7.33206 8.29679 8.84135 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.010818 B = 0.004257 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.736991 B = 6576.344585 C = 8441.597168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.076 4.076 3 Si 1.106 2.894 4 H -0.273 1.273 5 H -0.259 1.259 6 H -0.301 1.301 7 C -0.301 4.301 8 H 0.036 0.964 9 N -0.653 5.653 10 C 0.098 3.902 11 C 0.088 3.912 12 C 0.102 3.898 13 C -0.128 4.128 14 C -0.134 4.134 15 C 0.062 3.938 16 H 0.115 0.885 17 C 0.114 3.886 18 N -0.709 5.709 19 C 0.513 3.487 20 O -0.574 6.574 21 C 0.082 3.918 22 H 0.116 0.884 23 C -0.147 4.147 24 C -0.119 4.119 25 C -0.157 4.157 26 C 0.054 3.946 27 O -0.389 6.389 28 O -0.363 6.363 29 H 0.246 0.754 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.029 0.971 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.121 0.879 37 H 0.081 0.919 38 H 0.044 0.956 39 H 0.094 0.906 40 H 0.414 0.586 41 H 0.085 0.915 42 H 0.046 0.954 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.101 0.899 46 H 0.054 0.946 47 H 0.075 0.925 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.144 3.903 7.972 23.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.269 4.269 3 Si 0.931 3.069 4 H -0.199 1.199 5 H -0.184 1.184 6 H -0.229 1.229 7 C -0.428 4.428 8 H 0.054 0.946 9 N -0.382 5.382 10 C -0.026 4.026 11 C 0.047 3.953 12 C -0.024 4.024 13 C -0.166 4.166 14 C -0.172 4.172 15 C 0.004 3.996 16 H 0.133 0.867 17 C -0.010 4.010 18 N -0.362 5.362 19 C 0.300 3.700 20 O -0.454 6.454 21 C 0.021 3.979 22 H 0.134 0.866 23 C -0.186 4.186 24 C -0.156 4.156 25 C -0.194 4.194 26 C -0.022 4.022 27 O -0.308 6.308 28 O -0.282 6.282 29 H 0.055 0.945 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.087 0.913 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.139 0.861 37 H 0.100 0.900 38 H 0.062 0.938 39 H 0.112 0.888 40 H 0.251 0.749 41 H 0.103 0.897 42 H 0.065 0.935 43 H 0.109 0.891 44 H 0.091 0.909 45 H 0.119 0.881 46 H 0.073 0.927 47 H 0.093 0.907 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 21.958 4.621 8.259 23.911 hybrid contribution -1.279 -1.970 0.053 2.350 sum 20.679 2.651 8.312 22.444 Atomic orbital electron populations 1.71051 1.06910 1.28581 1.53742 1.27069 0.96196 1.04426 0.99246 0.83267 0.74119 0.71666 0.77818 1.19919 1.18390 1.22949 1.19795 0.87326 0.95066 1.40659 0.94604 1.45903 1.10197 1.16521 1.65532 1.23062 0.87303 0.95551 0.96711 1.22818 0.93536 0.93809 0.85092 1.23002 0.86471 0.93790 0.99122 1.23008 0.91637 1.04266 0.97666 1.23108 1.01272 1.00790 0.92060 1.23388 0.83081 0.98783 0.94314 0.86706 1.21857 1.00683 0.94417 0.83994 1.45758 1.66389 1.18470 1.05571 1.20721 0.77227 0.86905 0.85177 1.90671 1.48111 1.19896 1.86674 1.21907 0.96877 0.94604 0.84508 0.86613 1.22142 0.93966 1.01310 1.01133 1.21611 1.02418 0.99026 0.92583 1.22220 0.96945 1.00662 0.99606 1.22916 0.94806 0.98733 0.85723 1.88008 1.85127 1.43714 1.13985 1.88343 1.26412 1.75023 1.38375 0.94530 0.90597 0.93633 0.95298 0.91284 0.87990 0.87871 0.86094 0.90036 0.93796 0.88797 0.74941 0.89651 0.93473 0.89119 0.90903 0.88089 0.92702 0.90679 0.87404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.35 13.71 21.65 0.30 -63.05 16 2 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 3 Si 1.11 54.64 25.32 68.60 1.74 56.37 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.26 -11.87 6.54 99.48 0.65 -11.22 16 6 H -0.30 -14.95 7.11 99.48 0.71 -14.25 16 7 C -0.30 -18.44 10.96 84.03 0.92 -17.52 16 8 H 0.04 2.41 8.06 -2.91 -0.02 2.38 16 9 N -0.65 -32.98 3.57 -739.95 -2.64 -35.62 16 10 C 0.10 3.93 6.75 83.56 0.56 4.49 16 11 C 0.09 2.83 1.56 -10.82 -0.02 2.81 16 12 C 0.10 4.03 8.24 83.48 0.69 4.72 16 13 C -0.13 -2.46 6.49 31.76 0.21 -2.25 16 14 C -0.13 -2.07 6.56 31.96 0.21 -1.86 16 15 C 0.06 1.27 3.61 31.10 0.11 1.39 16 16 H 0.12 1.75 8.14 -2.38 -0.02 1.73 16 17 C 0.11 2.73 5.24 86.38 0.45 3.18 16 18 N -0.71 -17.76 5.43 -463.06 -2.52 -20.27 16 19 C 0.51 15.28 7.18 87.66 0.63 15.91 16 20 O -0.57 -22.27 16.51 15.97 0.26 -22.00 16 21 C 0.08 1.94 3.05 29.88 0.09 2.04 16 22 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 23 C -0.15 -3.49 5.37 30.68 0.16 -3.33 16 24 C -0.12 -2.12 6.03 30.71 0.19 -1.93 16 25 C -0.16 -2.57 6.14 30.68 0.19 -2.38 16 26 C 0.05 0.92 6.84 72.01 0.49 1.42 16 27 O -0.39 -10.42 9.94 -130.00 -1.29 -11.72 16 28 O -0.36 -11.59 10.69 -148.98 -1.59 -13.19 16 29 H 0.25 16.38 8.73 -92.71 -0.81 15.57 16 30 H 0.08 2.72 8.13 -2.39 -0.02 2.70 16 31 H 0.05 1.91 3.73 -2.39 -0.01 1.90 16 32 H 0.03 1.22 8.14 -2.39 -0.02 1.21 16 33 H 0.07 2.42 7.99 -2.39 -0.02 2.41 16 34 H 0.10 1.71 7.93 -2.39 -0.02 1.69 16 35 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 1.29 7.85 -2.39 -0.02 1.27 16 38 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.41 8.87 8.25 -92.71 -0.76 8.11 16 41 H 0.08 1.97 7.99 -2.38 -0.02 1.95 16 42 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.08 0.92 8.14 -2.38 -0.02 0.91 16 48 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -86.72 378.09 -0.30 -87.01 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 0.09 Total: 20.02 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 5.35 Total: 2.44 kcal Atomic # 7 Polarization: -114.08 SS G_CDS: -4.86 Total: -118.94 kcal Atomic # 8 Polarization: -44.29 SS G_CDS: -2.62 Total: -46.91 kcal Atomic # 14 Polarization: 54.64 SS G_CDS: 1.74 Total: 56.37 kcal Total: -86.72 -0.30 -87.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053590136.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.709 kcal (2) G-P(sol) polarization free energy of solvation -86.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds