Wall clock time and date at job start Tue Mar 31 2020 13:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.47220 * 135.96808 * 359.35785 * 9 7 2 11 11 C 1.52915 * 87.68348 * 153.66706 * 10 9 7 12 12 C 1.47224 * 135.96376 * 179.72312 * 9 7 2 13 13 C 1.53317 * 115.72956 * 270.11806 * 11 10 9 14 14 C 1.55025 * 103.78869 * 229.63824 * 13 11 10 15 15 H 1.09003 * 110.87257 * 139.21822 * 14 13 11 16 16 N 1.46496 * 110.87246 * 262.69462 * 14 13 11 17 17 C 1.34777 * 120.00399 * 204.99822 * 16 14 13 18 18 O 1.21285 * 119.99547 * 0.02562 * 17 16 14 19 19 C 1.50697 * 120.00519 * 179.97438 * 17 16 14 20 20 C 1.52998 * 109.47670 * 180.02562 * 19 17 16 21 21 C 1.53183 * 109.54093 * 294.82476 * 20 19 17 22 22 C 1.53107 * 109.15369 * 183.23729 * 21 20 19 23 23 O 1.42901 * 109.48643 * 57.47606 * 22 21 20 24 24 C 1.42906 * 114.09869 * 298.88530 * 23 22 21 25 25 C 1.53094 * 109.41160 * 61.15781 * 24 23 22 26 26 C 1.55063 * 102.13072 * 20.85468 * 14 13 11 27 27 O 1.42846 * 115.81516 * 141.74038 * 11 10 9 28 28 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 29 29 H 1.09001 * 113.49518 * 268.34527 * 10 9 7 30 30 H 1.08998 * 113.50705 * 38.89365 * 10 9 7 31 31 H 1.09002 * 113.50578 * 321.10171 * 12 9 7 32 32 H 1.08998 * 113.50446 * 91.58765 * 12 9 7 33 33 H 1.09002 * 110.56619 * 348.21584 * 13 11 10 34 34 H 1.08999 * 110.56481 * 111.06491 * 13 11 10 35 35 H 0.97003 * 119.99935 * 25.00179 * 16 14 13 36 36 H 1.09002 * 109.46997 * 300.00571 * 19 17 16 37 37 H 1.09005 * 109.47158 * 59.99958 * 19 17 16 38 38 H 1.09000 * 109.54219 * 54.99699 * 20 19 17 39 39 H 1.08998 * 109.52426 * 303.05739 * 21 20 19 40 40 H 1.09001 * 109.52424 * 63.24654 * 21 20 19 41 41 H 1.09001 * 109.40875 * 297.49456 * 22 21 20 42 42 H 1.09003 * 109.48708 * 177.50790 * 22 21 20 43 43 H 1.08997 * 109.47923 * 301.18237 * 24 23 22 44 44 H 1.08993 * 109.49141 * 181.14316 * 24 23 22 45 45 H 1.09004 * 109.52065 * 182.48180 * 25 24 23 46 46 H 1.08996 * 109.52410 * 62.29924 * 25 24 23 47 47 H 1.09000 * 110.58523 * 82.02776 * 26 14 13 48 48 H 1.09004 * 110.58359 * 204.93198 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 -0.0899 -2.7930 -0.0023 11 6 0.3423 -4.0867 -0.6934 12 6 1.6824 -3.8163 -0.0143 13 6 0.3578 -4.0495 -2.2261 14 6 -0.4283 -5.3217 -2.6345 15 1 -1.0875 -5.1168 -3.4781 16 7 0.4864 -6.4230 -2.9456 17 6 0.0938 -7.4118 -3.7730 18 8 -1.0165 -7.3896 -4.2604 19 6 1.0349 -8.5444 -4.0935 20 6 0.3484 -9.5235 -5.0479 21 6 -0.8416 -10.1793 -4.3405 22 6 -1.4724 -11.2155 -5.2746 23 8 -0.4870 -12.1787 -5.6530 24 6 0.6257 -11.6281 -6.3607 25 6 1.3422 -10.6101 -5.4695 26 6 -1.2440 -5.6267 -1.3515 27 8 -0.3407 -5.2711 -0.2798 28 1 -0.4850 0.8401 0.0004 29 1 -0.4942 -2.9487 0.9979 30 1 -0.7253 -2.1593 -0.6210 31 1 2.5426 -4.0461 -0.6432 32 1 1.7610 -4.2500 0.9826 33 1 -0.1452 -3.1545 -2.5925 34 1 1.3807 -4.0951 -2.5999 35 1 1.3745 -6.4406 -2.5560 36 1 1.9337 -8.1474 -4.5653 37 1 1.3060 -9.0628 -3.1737 38 1 -0.0020 -8.9876 -5.9300 39 1 -0.4982 -10.6720 -3.4309 40 1 -1.5795 -9.4181 -4.0873 41 1 -1.8532 -10.7159 -6.1654 42 1 -2.2924 -11.7170 -4.7606 43 1 0.2724 -11.1337 -7.2656 44 1 1.3174 -12.4266 -6.6289 45 1 2.1646 -10.1567 -6.0228 46 1 1.7310 -11.1117 -4.5834 47 1 -2.1436 -5.0123 -1.3143 48 1 -1.4993 -6.6852 -1.3024 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053762620.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:45 Heat of formation + Delta-G solvation = -76.242390 kcal Electronic energy + Delta-G solvation = -28087.386062 eV Core-core repulsion = 24143.966783 eV Total energy + Delta-G solvation = -3943.419279 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.57416 -39.82656 -38.86254 -36.45104 -34.89182 -34.28714 -32.15511 -31.33888 -30.82608 -28.93825 -28.02970 -25.84347 -24.79627 -24.10601 -23.76695 -22.17266 -21.46903 -20.50121 -20.17486 -18.83998 -17.26419 -16.93908 -16.57117 -16.33089 -16.22207 -15.61841 -15.32003 -15.10931 -15.03682 -14.87066 -14.39467 -14.11776 -13.96331 -13.74625 -13.21526 -13.08170 -12.73467 -12.53036 -12.41933 -12.20597 -12.07045 -11.60898 -11.42544 -11.37746 -11.26206 -11.08706 -10.98384 -10.89873 -10.80142 -10.74822 -10.60718 -10.55092 -10.12251 -9.95284 -9.61644 -9.58949 -9.17015 -8.87210 -8.64513 -6.97435 -5.83584 -3.17116 2.53883 3.07981 3.35362 3.39325 3.41113 3.62079 4.18411 4.35487 4.40046 4.45647 4.47880 4.67172 4.73458 4.85836 4.97755 5.03081 5.08938 5.12534 5.16732 5.20592 5.24641 5.30082 5.31980 5.43343 5.48779 5.51089 5.55763 5.57094 5.62529 5.79342 5.82925 5.87215 6.01446 6.08729 6.15055 6.25892 6.33360 6.49398 6.54256 6.59801 6.92952 6.93340 7.14201 7.42812 7.45977 7.59112 7.89285 8.15157 8.96071 9.62585 10.54811 11.33777 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.032496 B = 0.002219 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.439552 B =12613.723479 C =12904.430277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.915 3.085 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.218 4.218 8 H 0.082 0.918 9 N -0.602 5.602 10 C 0.148 3.852 11 C 0.043 3.957 12 C 0.129 3.871 13 C -0.114 4.114 14 C 0.106 3.894 15 H 0.104 0.896 16 N -0.714 5.714 17 C 0.513 3.487 18 O -0.543 6.543 19 C -0.137 4.137 20 C -0.073 4.073 21 C -0.156 4.156 22 C 0.062 3.938 23 O -0.387 6.387 24 C 0.061 3.939 25 C -0.153 4.153 26 C 0.042 3.958 27 O -0.363 6.363 28 H 0.255 0.745 29 H 0.032 0.968 30 H 0.074 0.926 31 H 0.043 0.957 32 H 0.040 0.960 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.403 0.597 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.094 0.906 41 H 0.050 0.950 42 H 0.092 0.908 43 H 0.049 0.951 44 H 0.092 0.908 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.069 0.931 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.885 -20.906 -11.292 23.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.745 3.255 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.345 4.345 8 H 0.100 0.900 9 N -0.330 5.330 10 C 0.022 3.978 11 C 0.002 3.998 12 C 0.002 3.998 13 C -0.152 4.152 14 C 0.001 3.999 15 H 0.122 0.878 16 N -0.365 5.365 17 C 0.300 3.700 18 O -0.420 6.420 19 C -0.177 4.177 20 C -0.091 4.091 21 C -0.194 4.194 22 C -0.015 4.015 23 O -0.306 6.306 24 C -0.015 4.015 25 C -0.190 4.190 26 C -0.037 4.037 27 O -0.280 6.280 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.238 0.762 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.113 0.887 41 H 0.068 0.932 42 H 0.110 0.890 43 H 0.068 0.932 44 H 0.110 0.890 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.087 0.913 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.129 -20.808 -11.400 23.727 hybrid contribution 0.937 1.438 0.272 1.738 sum 1.066 -19.370 -11.128 22.365 Atomic orbital electron populations 1.69819 1.05045 1.25637 1.56002 1.24819 0.95721 0.97605 1.02199 0.86160 0.78458 0.82915 0.77979 1.21002 1.21492 1.21087 1.18832 0.90045 0.81028 1.44641 0.89998 1.45306 1.02612 0.99060 1.86029 1.22515 0.89012 0.88971 0.97337 1.23904 0.96059 0.86568 0.93256 1.22419 0.93201 0.86729 0.97456 1.22664 1.01469 0.96697 0.94412 1.22624 0.92281 0.86366 0.98595 0.87759 1.46030 1.18457 1.23838 1.48168 1.20682 0.88256 0.83014 0.78055 1.90657 1.21687 1.77236 1.52454 1.21746 0.98858 0.95289 1.01816 1.20926 0.95133 0.94626 0.98457 1.22374 0.98979 0.99169 0.98841 1.22588 0.90685 0.90523 0.97687 1.87917 1.32416 1.34434 1.75813 1.22540 0.88400 0.96905 0.93692 1.22276 0.98548 0.97148 1.01074 1.23876 0.93164 1.00780 0.85844 1.88752 1.55301 1.43761 1.40224 0.93462 0.95021 0.90797 0.93914 0.94193 0.88619 0.89975 0.76235 0.88748 0.88703 0.90224 0.91623 0.88717 0.93181 0.88989 0.93248 0.88993 0.90778 0.90865 0.91273 0.89565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.83 11.51 55.49 0.64 -26.20 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 3 Si 0.92 21.70 29.55 -169.99 -5.02 16.68 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.22 -5.99 10.74 -15.06 -0.16 -6.15 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.73 16 9 N -0.60 -15.20 3.74 -184.61 -0.69 -15.89 16 10 C 0.15 3.49 6.92 -7.90 -0.05 3.43 16 11 C 0.04 0.80 1.66 -90.68 -0.15 0.65 16 12 C 0.13 2.62 8.20 -8.03 -0.07 2.55 16 13 C -0.11 -1.81 6.11 -25.50 -0.16 -1.97 16 14 C 0.11 1.44 3.51 -65.77 -0.23 1.21 16 15 H 0.10 1.44 7.54 -51.93 -0.39 1.05 16 16 N -0.71 -8.05 5.15 -51.72 -0.27 -8.32 16 17 C 0.51 5.76 7.57 -10.99 -0.08 5.67 16 18 O -0.54 -7.75 13.63 5.55 0.08 -7.67 16 19 C -0.14 -1.08 5.18 -27.89 -0.14 -1.22 16 20 C -0.07 -0.60 1.92 -90.44 -0.17 -0.78 16 21 C -0.16 -1.45 5.13 -26.58 -0.14 -1.58 16 22 C 0.06 0.55 6.84 37.21 0.25 0.80 16 23 O -0.39 -3.82 10.77 -35.23 -0.38 -4.20 16 24 C 0.06 0.45 6.84 37.21 0.25 0.71 16 25 C -0.15 -1.03 5.42 -26.59 -0.14 -1.17 16 26 C 0.04 0.60 7.42 38.25 0.28 0.88 16 27 O -0.36 -6.36 11.32 -35.23 -0.40 -6.76 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.89 6.93 -51.93 -0.36 1.53 16 31 H 0.04 0.79 7.91 -51.93 -0.41 0.38 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.10 1.66 7.82 -51.93 -0.41 1.25 16 34 H 0.08 1.24 7.70 -51.93 -0.40 0.84 16 35 H 0.40 3.93 8.63 -40.82 -0.35 3.58 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.76 7.96 -51.93 -0.41 0.35 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 1.05 6.05 -51.93 -0.31 0.74 16 41 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 378.47 15.07 5.70 5.70 Total: -1.00 -32.23 378.47 -9.24 -41.47 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -8.09 Total: 2.43 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -0.80 Total: 2.75 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: -0.32 Total: -50.41 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.70 Total: -18.63 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.23 -9.24 -41.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053762620.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.775 kcal (2) G-P(sol) polarization free energy of solvation -32.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds