Wall clock time and date at job start Tue Mar 31 2020 13:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00064 * 2 1 4 4 H 1.48496 * 109.47118 * 274.98480 * 3 2 1 5 5 H 1.48496 * 109.47213 * 34.99033 * 3 2 1 6 6 H 1.48508 * 109.47170 * 154.98714 * 3 2 1 7 7 C 1.38819 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00100 * 185.08791 * 7 2 1 9 9 N 1.36941 * 119.99598 * 5.08729 * 7 2 1 10 10 C 1.47772 * 134.40586 * 173.50775 * 9 7 2 11 11 C 1.52941 * 85.80494 * 156.05629 * 10 9 7 12 12 C 1.47765 * 134.41045 * 353.47274 * 9 7 2 13 13 C 1.54009 * 115.15006 * 266.49718 * 11 10 9 14 14 C 1.55475 * 100.78247 * 194.49240 * 13 11 10 15 15 H 1.09008 * 110.99995 * 274.82144 * 14 13 11 16 16 N 1.46499 * 110.82626 * 151.33501 * 14 13 11 17 17 C 1.34775 * 119.99754 * 160.59726 * 16 14 13 18 18 O 1.21288 * 120.00295 * 0.02562 * 17 16 14 19 19 C 1.50701 * 119.99983 * 180.02562 * 17 16 14 20 20 C 1.52999 * 109.47291 * 179.97438 * 19 17 16 21 21 H 1.09000 * 109.48103 * 304.98104 * 20 19 17 22 22 C 1.53089 * 109.48007 * 184.94171 * 20 19 17 23 23 C 1.53183 * 109.16347 * 182.40944 * 22 20 19 24 24 C 1.53177 * 109.03412 * 56.98165 * 23 22 20 25 25 C 1.53082 * 109.16561 * 303.02159 * 24 23 22 26 26 O 1.42901 * 109.47825 * 65.00127 * 20 19 17 27 27 C 1.54471 * 102.36826 * 33.11485 * 14 13 11 28 28 O 1.42550 * 116.18585 * 141.03152 * 11 10 9 29 29 H 0.97002 * 119.99836 * 359.97438 * 1 2 3 30 30 H 1.08990 * 113.82012 * 41.83430 * 10 9 7 31 31 H 1.08994 * 113.92458 * 270.28734 * 10 9 7 32 32 H 1.08999 * 113.82243 * 89.72132 * 12 9 7 33 33 H 1.09004 * 113.82213 * 318.16502 * 12 9 7 34 34 H 1.09008 * 111.15092 * 76.61326 * 13 11 10 35 35 H 1.08999 * 111.15611 * 312.37590 * 13 11 10 36 36 H 0.96992 * 119.99795 * 340.60394 * 16 14 13 37 37 H 1.09002 * 109.47312 * 300.00319 * 19 17 16 38 38 H 1.09003 * 109.47155 * 60.00250 * 19 17 16 39 39 H 1.08999 * 109.52908 * 302.31782 * 22 20 19 40 40 H 1.09000 * 109.52406 * 62.51036 * 22 20 19 41 41 H 1.09004 * 109.54511 * 297.11549 * 23 22 20 42 42 H 1.08999 * 109.61661 * 176.89270 * 23 22 20 43 43 H 1.08998 * 109.52205 * 183.11038 * 24 23 22 44 44 H 1.09003 * 109.51920 * 62.92712 * 24 23 22 45 45 H 1.09002 * 109.48301 * 297.62585 * 25 24 23 46 46 H 1.08997 * 109.49472 * 177.59890 * 25 24 23 47 47 H 1.09002 * 109.82804 * 98.14361 * 27 14 13 48 48 H 1.09001 * 109.83247 * 219.02429 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3947 5 1 1.5044 2.6199 0.8028 6 1 3.5965 1.4120 0.5920 7 6 2.0103 -1.2022 0.0005 8 1 3.0870 -1.2040 0.0835 9 7 1.3295 -2.3858 -0.1041 10 6 1.7313 -3.7998 -0.2553 11 6 0.3729 -4.1349 0.3625 12 6 -0.1001 -2.7594 -0.1103 13 6 0.3798 -4.3349 1.8896 14 6 -1.0033 -5.0130 2.1003 15 1 -1.7940 -4.2680 2.1905 16 7 -0.9803 -5.8894 3.2740 17 6 -2.1355 -6.2591 3.8617 18 8 -3.1941 -5.8667 3.4186 19 6 -2.1118 -7.1602 5.0694 20 6 -3.5444 -7.4236 5.5374 21 1 -4.0496 -6.4740 5.7139 22 6 -3.5165 -8.2363 6.8345 23 6 -4.9536 -8.5473 7.2640 24 6 -5.6650 -9.2893 6.1283 25 6 -5.6099 -8.4360 4.8585 26 8 -4.2468 -8.1573 4.5322 27 6 -1.1695 -5.8358 0.8036 28 8 -0.3094 -5.2582 -0.1895 29 1 -0.4850 0.8401 0.0004 30 1 2.5799 -4.0852 0.3662 31 1 1.8349 -4.1215 -1.2915 32 1 -0.5492 -2.7658 -1.1035 33 1 -0.6986 -2.2227 0.6258 34 1 0.4330 -3.3792 2.4112 35 1 1.1919 -4.9940 2.1963 36 1 -0.1337 -6.2034 3.6282 37 1 -1.6348 -8.1050 4.8086 38 1 -1.5509 -6.6791 5.8708 39 1 -2.9761 -9.1682 6.6690 40 1 -3.0199 -7.6598 7.6149 41 1 -5.4799 -7.6169 7.4776 42 1 -4.9415 -9.1726 8.1567 43 1 -6.7047 -9.4659 6.4037 44 1 -5.1679 -10.2425 5.9485 45 1 -6.1422 -7.4997 5.0263 46 1 -6.0772 -8.9774 4.0360 47 1 -0.8826 -6.8719 0.9839 48 1 -2.2056 -5.7922 0.4682 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053772124.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:50 Heat of formation + Delta-G solvation = -77.700745 kcal Electronic energy + Delta-G solvation = -28030.615650 eV Core-core repulsion = 24087.133131 eV Total energy + Delta-G solvation = -3943.482518 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.39568 -39.73476 -38.72925 -36.21838 -34.43514 -33.85843 -33.13032 -32.08542 -30.42543 -28.55340 -27.82529 -25.76753 -24.91905 -24.71579 -23.19688 -22.01362 -21.29583 -20.54186 -20.38591 -18.70300 -17.17466 -16.78446 -16.73153 -16.48511 -16.13155 -15.41638 -15.10842 -14.89082 -14.84914 -14.71626 -14.49707 -14.29663 -13.72380 -13.56837 -13.15323 -12.90615 -12.84626 -12.69676 -12.59644 -12.25618 -11.86433 -11.62688 -11.53911 -11.40641 -11.33188 -11.08865 -11.06651 -10.92204 -10.80814 -10.71372 -10.58807 -10.28754 -9.99521 -9.80877 -9.58086 -9.54111 -9.00592 -8.79863 -8.71051 -6.89896 -5.79433 -3.11655 2.66816 3.07852 3.38792 3.43599 3.46053 3.55753 4.24724 4.35821 4.41963 4.50204 4.51299 4.59060 4.69249 4.78819 4.90743 5.00657 5.12118 5.16723 5.20235 5.23683 5.25884 5.33898 5.37335 5.39958 5.45095 5.47309 5.55857 5.56469 5.59493 5.69510 5.77688 5.95464 5.98780 6.05156 6.17826 6.32128 6.39047 6.52260 6.62399 6.72645 7.05635 7.07924 7.22199 7.49282 7.51864 7.73768 7.95023 8.25945 9.02288 9.68299 10.57325 11.38232 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.024147 B = 0.002316 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.296386 B =12085.968514 C =12513.041661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.223 4.223 8 H 0.082 0.918 9 N -0.605 5.605 10 C 0.129 3.871 11 C 0.055 3.945 12 C 0.160 3.840 13 C -0.121 4.121 14 C 0.113 3.887 15 H 0.105 0.895 16 N -0.722 5.722 17 C 0.513 3.487 18 O -0.524 6.524 19 C -0.135 4.135 20 C 0.106 3.894 21 H 0.066 0.934 22 C -0.151 4.151 23 C -0.122 4.122 24 C -0.158 4.158 25 C 0.063 3.937 26 O -0.366 6.366 27 C 0.046 3.954 28 O -0.369 6.369 29 H 0.255 0.745 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.400 0.600 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.050 0.950 46 H 0.092 0.908 47 H 0.063 0.937 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.917 -19.698 15.566 26.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.351 4.351 8 H 0.100 0.900 9 N -0.334 5.334 10 C 0.003 3.997 11 C 0.015 3.985 12 C 0.034 3.966 13 C -0.159 4.159 14 C 0.008 3.992 15 H 0.123 0.877 16 N -0.374 5.374 17 C 0.299 3.701 18 O -0.399 6.399 19 C -0.175 4.175 20 C 0.048 3.952 21 H 0.084 0.916 22 C -0.189 4.189 23 C -0.160 4.160 24 C -0.195 4.195 25 C -0.014 4.014 26 O -0.285 6.285 27 C -0.032 4.032 28 O -0.287 6.287 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.234 0.766 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.068 0.932 46 H 0.110 0.890 47 H 0.082 0.918 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.567 -19.194 14.885 25.441 hybrid contribution 0.686 0.865 0.470 1.200 sum -6.881 -18.329 15.355 24.882 Atomic orbital electron populations 1.69841 1.05063 1.25505 1.55896 1.24847 0.95691 0.97593 1.02185 0.86117 0.78684 0.83502 0.77565 1.21568 1.21701 1.20530 1.18966 0.90705 0.81641 1.43763 0.90030 1.45714 1.02264 1.00522 1.84853 1.22549 0.93144 0.86164 0.97871 1.24196 0.95397 0.87484 0.91453 1.22492 0.88154 0.87074 0.98840 1.22956 0.94665 1.01981 0.96295 1.22600 0.99729 0.92144 0.84685 0.87747 1.45969 1.08863 1.51342 1.31274 1.20524 0.83873 0.80944 0.84758 1.90740 1.30100 1.54625 1.64479 1.21744 0.97752 1.00833 0.97195 1.21749 0.91546 0.94640 0.87302 0.91565 1.22237 0.97650 1.01341 0.97690 1.21573 0.95585 1.00694 0.98132 1.22221 1.01177 0.99931 0.96206 1.22510 0.83634 0.98353 0.96882 1.87983 1.23246 1.74891 1.42393 1.23442 0.95139 0.96595 0.88011 1.88307 1.58730 1.45384 1.36290 0.93517 0.93359 0.93891 0.94512 0.91043 0.88377 0.90533 0.76573 0.88037 0.87499 0.90920 0.90751 0.91736 0.91486 0.91020 0.91143 0.93166 0.89010 0.91839 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.32 11.52 55.49 0.64 -26.69 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 3 Si 0.91 22.07 29.56 -169.99 -5.02 17.05 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.22 -6.24 10.69 -15.05 -0.16 -6.40 16 8 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 9 N -0.60 -15.65 3.69 -183.24 -0.68 -16.32 16 10 C 0.13 2.74 8.49 -3.38 -0.03 2.71 16 11 C 0.06 1.10 1.47 -90.31 -0.13 0.96 16 12 C 0.16 3.92 6.90 -3.38 -0.02 3.90 16 13 C -0.12 -1.97 6.02 -24.89 -0.15 -2.12 16 14 C 0.11 1.72 3.29 -65.84 -0.22 1.50 16 15 H 0.10 1.82 7.71 -51.92 -0.40 1.42 16 16 N -0.72 -8.41 5.14 -51.78 -0.27 -8.68 16 17 C 0.51 6.48 7.71 -10.99 -0.08 6.40 16 18 O -0.52 -8.94 15.15 -8.87 -0.13 -9.07 16 19 C -0.14 -1.14 5.41 -27.88 -0.15 -1.29 16 20 C 0.11 1.01 2.19 -26.69 -0.06 0.95 16 21 H 0.07 0.72 7.96 -51.93 -0.41 0.31 16 22 C -0.15 -1.03 5.42 -26.59 -0.14 -1.17 16 23 C -0.12 -0.79 6.03 -26.54 -0.16 -0.95 16 24 C -0.16 -1.08 6.14 -26.60 -0.16 -1.25 16 25 C 0.06 0.58 6.84 37.20 0.25 0.83 16 26 O -0.37 -4.33 9.64 -49.65 -0.48 -4.81 16 27 C 0.05 0.75 7.57 37.93 0.29 1.03 16 28 O -0.37 -7.07 11.17 -35.23 -0.39 -7.46 16 29 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.05 0.93 8.11 -51.93 -0.42 0.51 16 31 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 1.88 7.36 -51.93 -0.38 1.50 16 34 H 0.10 1.78 8.05 -51.92 -0.42 1.36 16 35 H 0.08 1.05 7.98 -51.93 -0.41 0.64 16 36 H 0.40 3.39 8.50 -40.82 -0.35 3.04 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.06 0.92 8.02 -51.93 -0.42 0.50 16 48 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 382.53 15.07 5.76 5.76 Total: -1.00 -34.26 382.53 -9.85 -44.12 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -8.25 Total: 1.26 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -1.03 Total: 4.84 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.30 Total: -51.68 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -1.01 Total: -21.34 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.26 -9.85 -44.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053772124.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.585 kcal (2) G-P(sol) polarization free energy of solvation -34.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds