Wall clock time and date at job start Tue Mar 31 2020 14:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.54284 * 2 1 4 4 O 1.21289 * 119.99995 * 239.99681 * 3 2 1 5 5 N 1.34777 * 120.00007 * 60.00002 * 3 2 1 6 6 C 1.46496 * 119.99837 * 179.97438 * 5 3 2 7 7 H 1.09000 * 110.56953 * 327.67031 * 6 5 3 8 8 C 1.54544 * 110.50971 * 90.34831 * 6 5 3 9 9 O 1.44640 * 105.03417 * 142.27733 * 8 6 5 10 10 C 1.43486 * 105.32514 * 321.05822 * 9 8 6 11 11 C 1.52881 * 116.01566 * 168.66708 * 10 9 8 12 12 N 1.47780 * 85.78534 * 94.53098 * 11 10 9 13 13 C 1.36939 * 134.39915 * 203.83383 * 12 11 10 14 14 H 1.08004 * 120.00100 * 173.55734 * 13 12 11 15 15 C 1.38811 * 120.00179 * 353.56417 * 13 12 11 16 16 N 1.31628 * 119.99781 * 5.09424 * 15 13 12 17 17 Si 1.86801 * 120.00168 * 185.08824 * 15 13 12 18 18 H 1.48501 * 109.47059 * 94.98679 * 17 15 13 19 19 H 1.48500 * 109.47055 * 214.98964 * 17 15 13 20 20 H 1.48497 * 109.46841 * 334.98995 * 17 15 13 21 21 C 1.47783 * 91.19894 * 23.87156 * 12 11 10 22 22 C 1.53469 * 106.13725 * 38.75080 * 10 9 8 23 23 C 1.53173 * 109.54535 * 120.17952 * 2 1 3 24 24 C 1.53279 * 109.06594 * 176.85278 * 23 2 1 25 25 O 1.42898 * 109.46108 * 302.44381 * 24 23 2 26 26 C 1.42899 * 114.09713 * 61.15650 * 25 24 23 27 27 C 1.53091 * 109.41948 * 298.84334 * 26 25 24 28 28 H 1.09000 * 109.46979 * 59.99925 * 1 2 3 29 29 H 1.08992 * 109.47147 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46880 * 300.00166 * 1 2 3 31 31 H 0.96998 * 119.99877 * 0.02562 * 5 3 2 32 32 H 1.08997 * 110.33205 * 261.16712 * 8 6 5 33 33 H 1.09001 * 110.32751 * 23.28732 * 8 6 5 34 34 H 1.09001 * 113.81822 * 208.74976 * 11 10 9 35 35 H 1.09000 * 113.82050 * 340.31039 * 11 10 9 36 36 H 0.97000 * 119.99735 * 179.97438 * 16 15 13 37 37 H 1.09000 * 113.82313 * 221.91421 * 21 12 11 38 38 H 1.09003 * 113.93143 * 90.35651 * 21 12 11 39 39 H 1.08996 * 110.57248 * 218.83530 * 22 10 9 40 40 H 1.09000 * 110.56968 * 96.10814 * 22 10 9 41 41 H 1.09003 * 109.52016 * 296.84496 * 23 2 1 42 42 H 1.08995 * 109.52559 * 57.02701 * 23 2 1 43 43 H 1.09004 * 109.45626 * 182.44484 * 24 23 2 44 44 H 1.09003 * 109.46583 * 62.44847 * 24 23 2 45 45 H 1.09004 * 109.47984 * 178.86056 * 26 25 24 46 46 H 1.09004 * 109.49305 * 58.83328 * 26 25 24 47 47 H 1.08999 * 109.52023 * 297.70647 * 27 26 25 48 48 H 1.09000 * 109.52613 * 177.51615 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0341 1.4202 0.0000 4 8 2.7319 1.8160 -0.9096 5 7 1.7095 2.2505 1.0108 6 6 2.2001 3.6309 1.0111 7 1 3.1801 3.6891 0.5374 8 6 1.1963 4.5623 0.2948 9 8 1.2174 5.7925 1.0553 10 6 1.3107 5.3877 2.4287 11 6 1.6201 6.4962 3.4350 12 7 0.1568 6.5865 3.6205 13 6 -0.6958 7.5682 4.0502 14 1 -1.7639 7.4165 3.9987 15 6 -0.1872 8.7584 4.5519 16 7 1.1091 8.9846 4.5222 17 14 -1.3426 10.0392 5.2690 18 1 -1.4228 9.8643 6.7415 19 1 -0.8293 11.3977 4.9590 20 1 -2.6942 9.8735 4.6766 21 6 -0.0190 5.1939 3.1580 22 6 2.2622 4.1839 2.4549 23 6 2.0424 -0.7256 1.2478 24 6 3.5731 -0.7883 1.1974 25 8 3.9833 -1.4476 -0.0022 26 6 3.5713 -0.7877 -1.2008 27 6 2.0424 -0.7256 -1.2480 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.1518 1.9338 1.7385 32 1 1.5155 4.7459 -0.7311 33 1 0.1981 4.1246 0.3075 34 1 2.1556 6.1509 4.3194 35 1 2.0629 7.3860 2.9875 36 1 1.4644 9.8164 4.8724 37 1 -0.8705 5.0555 2.4918 38 1 0.0211 4.4541 3.9576 39 1 1.9139 3.4358 3.1670 40 1 3.2755 4.5020 2.7001 41 1 1.7271 -0.1838 2.1395 42 1 1.6374 -1.7372 1.2730 43 1 3.9425 -1.3416 2.0609 44 1 3.9788 0.2233 1.2132 45 1 3.9395 -1.3405 -2.0652 46 1 3.9769 0.2240 -1.2168 47 1 1.6374 -1.7372 -1.2731 48 1 1.7271 -0.1837 -2.1396 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053958536.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:01 Heat of formation + Delta-G solvation = -68.788070 kcal Electronic energy + Delta-G solvation = -29051.948111 eV Core-core repulsion = 25108.852076 eV Total energy + Delta-G solvation = -3943.096036 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.23333 -39.90963 -38.29098 -36.18940 -35.21560 -34.49808 -32.10288 -31.44790 -30.32535 -28.75154 -28.12953 -25.86243 -24.98482 -24.21321 -23.95874 -22.69463 -21.97281 -20.91499 -19.75270 -19.09250 -17.09145 -16.74730 -16.69603 -16.26546 -16.07231 -15.43635 -15.36212 -15.18064 -14.84835 -14.61906 -14.48326 -14.34364 -14.00133 -13.22261 -13.13336 -12.99338 -12.87837 -12.74229 -12.53355 -12.40491 -12.31456 -12.04280 -11.72591 -11.67082 -11.54935 -11.26735 -11.10982 -10.88603 -10.84970 -10.77666 -10.48597 -10.22974 -9.97259 -9.73678 -9.64447 -9.57664 -9.16963 -8.97605 -8.81372 -6.89018 -5.77995 -3.09188 2.38978 2.90556 3.39540 3.44306 3.46952 3.64132 4.12336 4.17634 4.29719 4.38342 4.44702 4.56209 4.65755 4.75553 4.92741 4.94087 4.99036 5.12033 5.18025 5.19009 5.25621 5.28185 5.31167 5.34122 5.39554 5.45771 5.55168 5.58986 5.66345 5.71371 5.74474 5.76435 5.82987 5.90134 5.98468 6.08447 6.23464 6.29505 6.51035 6.57926 6.88155 6.95435 7.16899 7.28637 7.45421 7.65573 7.96961 8.00913 9.03485 9.70026 10.57027 11.40031 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.031176 B = 0.002598 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.913956 B =10773.742887 C =10839.411882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 C 0.523 3.477 4 O -0.535 6.535 5 N -0.715 5.715 6 C 0.112 3.888 7 H 0.102 0.898 8 C 0.036 3.964 9 O -0.331 6.331 10 C 0.056 3.944 11 C 0.179 3.821 12 N -0.604 5.604 13 C -0.223 4.223 14 H 0.080 0.920 15 C -0.006 4.006 16 N -0.919 5.919 17 Si 0.911 3.089 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.280 1.280 21 C 0.104 3.896 22 C -0.146 4.146 23 C -0.143 4.143 24 C 0.058 3.942 25 O -0.384 6.384 26 C 0.048 3.952 27 C -0.128 4.128 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.401 0.599 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.044 0.956 35 H 0.078 0.922 36 H 0.254 0.746 37 H 0.046 0.954 38 H 0.041 0.959 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.050 0.950 45 H 0.091 0.909 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.645 -22.711 -8.102 24.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.087 4.087 3 C 0.309 3.691 4 O -0.412 6.412 5 N -0.367 5.367 6 C 0.007 3.993 7 H 0.120 0.880 8 C -0.042 4.042 9 O -0.248 6.248 10 C 0.015 3.985 11 C 0.053 3.947 12 N -0.330 5.330 13 C -0.350 4.350 14 H 0.098 0.902 15 C -0.203 4.203 16 N -0.566 5.566 17 Si 0.741 3.259 18 H -0.216 1.216 19 H -0.216 1.216 20 H -0.206 1.206 21 C -0.022 4.022 22 C -0.185 4.185 23 C -0.181 4.181 24 C -0.019 4.019 25 O -0.303 6.303 26 C -0.028 4.028 27 C -0.166 4.166 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.236 0.764 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.115 0.885 44 H 0.068 0.932 45 H 0.109 0.891 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.153 -22.004 -8.714 23.876 hybrid contribution -1.176 0.617 0.950 1.633 sum 1.977 -21.387 -7.764 22.838 Atomic orbital electron populations 1.21855 0.91878 1.03148 1.02933 1.20910 0.97604 0.92165 0.97975 1.20523 0.79781 0.87116 0.81711 1.90661 1.37698 1.77260 1.35585 1.46114 1.53394 1.11908 1.25296 1.22478 0.99146 0.80379 0.97309 0.88027 1.23779 0.98016 0.85883 0.96538 1.89152 1.94305 1.25405 1.15953 1.23858 0.95390 0.95017 0.84263 1.22142 0.87112 0.94178 0.91221 1.45807 1.02774 1.06766 1.77634 1.18986 0.88440 0.93253 1.34354 0.90227 1.24811 0.96071 0.98199 1.01226 1.69826 1.10592 1.25473 1.50680 0.86111 0.79761 0.80975 0.79009 1.21631 1.21648 1.20572 1.22942 0.95291 0.89179 0.94821 1.23033 1.02153 0.98529 0.94777 1.22330 0.97388 1.01873 0.96543 1.22604 0.93176 0.97948 0.88193 1.87904 1.77143 1.51413 1.13818 1.22853 0.93577 0.99328 0.87085 1.22033 0.97291 1.00424 0.96841 0.91714 0.91160 0.91754 0.76389 0.89178 0.92458 0.93848 0.90372 0.93577 0.93604 0.94205 0.90050 0.89386 0.90266 0.89691 0.88550 0.93183 0.89102 0.90522 0.90542 0.90064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 8.39 37.16 0.31 -0.60 16 2 C -0.08 -0.67 0.63 -155.48 -0.10 -0.77 16 3 C 0.52 5.62 5.15 -10.99 -0.06 5.56 16 4 O -0.54 -7.53 13.50 5.55 0.07 -7.45 16 5 N -0.71 -7.14 4.86 -52.14 -0.25 -7.39 16 6 C 0.11 1.42 3.49 -66.21 -0.23 1.18 16 7 H 0.10 1.38 7.56 -51.93 -0.39 0.99 16 8 C 0.04 0.54 7.38 37.97 0.28 0.82 16 9 O -0.33 -6.57 11.45 -35.23 -0.40 -6.97 16 10 C 0.06 1.04 1.30 -90.66 -0.12 0.93 16 11 C 0.18 4.20 6.94 -3.40 -0.02 4.18 16 12 N -0.60 -15.62 3.70 -183.59 -0.68 -16.30 16 13 C -0.22 -6.35 10.69 -15.06 -0.16 -6.51 16 14 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 15 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 16 N -0.92 -27.48 11.52 55.49 0.64 -26.84 16 17 Si 0.91 22.31 29.56 -169.99 -5.02 17.29 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 21 C 0.10 2.08 8.45 -3.40 -0.03 2.05 16 22 C -0.15 -1.97 6.24 -25.57 -0.16 -2.13 16 23 C -0.14 -0.98 4.87 -26.50 -0.13 -1.11 16 24 C 0.06 0.50 6.62 37.30 0.25 0.74 16 25 O -0.38 -4.08 10.77 -35.23 -0.38 -4.46 16 26 C 0.05 0.47 6.55 37.20 0.24 0.72 16 27 C -0.13 -1.08 4.56 -26.59 -0.12 -1.20 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.37 7.57 -51.93 -0.39 -0.02 16 31 H 0.40 3.16 7.20 -40.82 -0.29 2.86 16 32 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.06 0.81 8.06 -51.93 -0.42 0.39 16 34 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.08 2.09 7.39 -51.93 -0.38 1.71 16 36 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.04 0.72 7.95 -51.93 -0.41 0.31 16 39 H 0.08 0.92 7.39 -51.93 -0.38 0.54 16 40 H 0.09 1.16 8.12 -51.93 -0.42 0.74 16 41 H 0.08 0.43 7.51 -51.93 -0.39 0.04 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.05 0.49 7.38 -51.93 -0.38 0.11 16 45 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.08 0.91 5.81 -51.93 -0.30 0.61 16 47 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.08 0.72 8.02 -51.93 -0.42 0.30 16 LS Contribution 372.79 15.07 5.62 5.62 Total: -1.00 -33.99 372.79 -8.49 -42.48 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.94 Total: 0.45 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -0.14 Total: 3.58 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -0.29 Total: -50.53 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.71 Total: -18.89 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.99 -8.49 -42.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053958536.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.304 kcal (2) G-P(sol) polarization free energy of solvation -33.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds