Wall clock time and date at job start Tue Mar 31 2020 14:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.54284 * 2 1 4 4 O 1.21289 * 119.99995 * 239.99681 * 3 2 1 5 5 N 1.34777 * 120.00007 * 60.00002 * 3 2 1 6 6 C 1.46496 * 119.99837 * 179.97438 * 5 3 2 7 7 H 1.09000 * 110.56953 * 327.67031 * 6 5 3 8 8 C 1.54544 * 110.50971 * 90.34831 * 6 5 3 9 9 O 1.44640 * 105.03417 * 142.27733 * 8 6 5 10 10 C 1.43486 * 105.32514 * 321.05822 * 9 8 6 11 11 C 1.52881 * 116.01566 * 168.66708 * 10 9 8 12 12 N 1.47780 * 85.78534 * 94.53098 * 11 10 9 13 13 C 1.36939 * 134.39915 * 203.83383 * 12 11 10 14 14 H 1.08004 * 120.00100 * 173.55734 * 13 12 11 15 15 C 1.38811 * 120.00179 * 353.56417 * 13 12 11 16 16 N 1.31628 * 119.99781 * 5.09424 * 15 13 12 17 17 Si 1.86801 * 120.00168 * 185.08824 * 15 13 12 18 18 H 1.48501 * 109.47059 * 94.98679 * 17 15 13 19 19 H 1.48500 * 109.47055 * 214.98964 * 17 15 13 20 20 H 1.48497 * 109.46841 * 334.98995 * 17 15 13 21 21 C 1.47783 * 91.19894 * 23.87156 * 12 11 10 22 22 C 1.53469 * 106.13725 * 38.75080 * 10 9 8 23 23 C 1.53173 * 109.54535 * 120.17952 * 2 1 3 24 24 C 1.53279 * 109.06594 * 176.85278 * 23 2 1 25 25 O 1.42898 * 109.46108 * 302.44381 * 24 23 2 26 26 C 1.42899 * 114.09713 * 61.15650 * 25 24 23 27 27 C 1.53091 * 109.41948 * 298.84334 * 26 25 24 28 28 H 1.09000 * 109.46979 * 59.99925 * 1 2 3 29 29 H 1.08992 * 109.47147 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46880 * 300.00166 * 1 2 3 31 31 H 0.96998 * 119.99877 * 0.02562 * 5 3 2 32 32 H 1.08997 * 110.33205 * 261.16712 * 8 6 5 33 33 H 1.09001 * 110.32751 * 23.28732 * 8 6 5 34 34 H 1.09001 * 113.81822 * 208.74976 * 11 10 9 35 35 H 1.09000 * 113.82050 * 340.31039 * 11 10 9 36 36 H 0.97000 * 119.99735 * 179.97438 * 16 15 13 37 37 H 1.09000 * 113.82313 * 221.91421 * 21 12 11 38 38 H 1.09003 * 113.93143 * 90.35651 * 21 12 11 39 39 H 1.08996 * 110.57248 * 218.83530 * 22 10 9 40 40 H 1.09000 * 110.56968 * 96.10814 * 22 10 9 41 41 H 1.09003 * 109.52016 * 296.84496 * 23 2 1 42 42 H 1.08995 * 109.52559 * 57.02701 * 23 2 1 43 43 H 1.09004 * 109.45626 * 182.44484 * 24 23 2 44 44 H 1.09003 * 109.46583 * 62.44847 * 24 23 2 45 45 H 1.09004 * 109.47984 * 178.86056 * 26 25 24 46 46 H 1.09004 * 109.49305 * 58.83328 * 26 25 24 47 47 H 1.08999 * 109.52023 * 297.70647 * 27 26 25 48 48 H 1.09000 * 109.52613 * 177.51615 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0341 1.4202 0.0000 4 8 2.7319 1.8160 -0.9096 5 7 1.7095 2.2505 1.0108 6 6 2.2001 3.6309 1.0111 7 1 3.1801 3.6891 0.5374 8 6 1.1963 4.5623 0.2948 9 8 1.2174 5.7925 1.0553 10 6 1.3107 5.3877 2.4287 11 6 1.6201 6.4962 3.4350 12 7 0.1568 6.5865 3.6205 13 6 -0.6958 7.5682 4.0502 14 1 -1.7639 7.4165 3.9987 15 6 -0.1872 8.7584 4.5519 16 7 1.1091 8.9846 4.5222 17 14 -1.3426 10.0392 5.2690 18 1 -1.4228 9.8643 6.7415 19 1 -0.8293 11.3977 4.9590 20 1 -2.6942 9.8735 4.6766 21 6 -0.0190 5.1939 3.1580 22 6 2.2622 4.1839 2.4549 23 6 2.0424 -0.7256 1.2478 24 6 3.5731 -0.7883 1.1974 25 8 3.9833 -1.4476 -0.0022 26 6 3.5713 -0.7877 -1.2008 27 6 2.0424 -0.7256 -1.2480 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.1518 1.9338 1.7385 32 1 1.5155 4.7459 -0.7311 33 1 0.1981 4.1246 0.3075 34 1 2.1556 6.1509 4.3194 35 1 2.0629 7.3860 2.9875 36 1 1.4644 9.8164 4.8724 37 1 -0.8705 5.0555 2.4918 38 1 0.0211 4.4541 3.9576 39 1 1.9139 3.4358 3.1670 40 1 3.2755 4.5020 2.7001 41 1 1.7271 -0.1838 2.1395 42 1 1.6374 -1.7372 1.2730 43 1 3.9425 -1.3416 2.0609 44 1 3.9788 0.2233 1.2132 45 1 3.9395 -1.3405 -2.0652 46 1 3.9769 0.2240 -1.2168 47 1 1.6374 -1.7372 -1.2731 48 1 1.7271 -0.1837 -2.1396 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053958536.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:59 Heat of formation + Delta-G solvation = -93.890683 kcal Electronic energy + Delta-G solvation = -29053.036642 eV Core-core repulsion = 25108.852076 eV Total energy + Delta-G solvation = -3944.184567 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.08934 -41.23178 -39.18228 -37.72339 -35.98236 -35.55323 -34.13862 -32.18141 -31.44997 -29.86408 -29.24599 -27.50542 -26.69958 -24.98950 -24.59640 -23.95856 -23.22606 -21.99899 -20.68962 -20.53253 -18.75103 -17.85277 -17.64808 -17.12744 -16.96842 -16.83955 -16.59320 -16.22016 -16.19581 -15.89747 -15.43661 -15.33854 -15.11433 -14.82671 -14.57211 -14.26640 -13.65215 -13.56319 -13.43889 -13.27783 -13.18143 -12.99500 -12.96565 -12.88852 -12.83673 -12.80157 -12.64268 -12.21871 -12.19591 -11.78651 -11.63681 -11.50987 -11.41841 -11.37783 -10.92552 -10.72837 -10.56410 -10.35173 -10.06724 -8.92171 -7.92446 -5.24277 1.44154 1.46344 1.55232 1.56698 2.04538 2.46574 2.90423 2.97367 3.25755 3.39140 3.42213 3.50042 3.61283 3.68776 3.78635 3.79913 4.03031 4.04613 4.10607 4.23343 4.31243 4.52459 4.55484 4.63937 4.65356 4.67568 4.70082 4.73137 4.80767 4.83992 4.86638 4.86932 4.92276 4.97772 5.00336 5.09661 5.10283 5.15902 5.21154 5.23399 5.29902 5.46067 5.50012 5.90921 6.12503 6.25791 6.50152 6.90182 7.20419 7.59509 8.54121 9.25531 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.031176 B = 0.002598 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.913956 B =10773.742887 C =10839.411882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.078 4.078 3 C 0.521 3.479 4 O -0.572 6.572 5 N -0.703 5.703 6 C 0.128 3.872 7 H 0.092 0.908 8 C 0.035 3.965 9 O -0.371 6.371 10 C 0.074 3.926 11 C 0.171 3.829 12 N -0.640 5.640 13 C -0.234 4.234 14 H 0.083 0.917 15 C -0.069 4.069 16 N -0.953 5.953 17 Si 0.978 3.022 18 H -0.283 1.283 19 H -0.296 1.296 20 H -0.268 1.268 21 C 0.109 3.891 22 C -0.131 4.131 23 C -0.138 4.138 24 C 0.050 3.950 25 O -0.400 6.400 26 C 0.047 3.953 27 C -0.126 4.126 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.416 0.584 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.031 0.969 36 H 0.248 0.752 37 H 0.050 0.950 38 H 0.075 0.925 39 H 0.115 0.885 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.113 0.887 44 H 0.033 0.967 45 H 0.099 0.901 46 H 0.051 0.949 47 H 0.094 0.906 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.129 -25.532 -7.372 26.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.082 4.082 3 C 0.308 3.692 4 O -0.451 6.451 5 N -0.356 5.356 6 C 0.022 3.978 7 H 0.110 0.890 8 C -0.043 4.043 9 O -0.289 6.289 10 C 0.033 3.967 11 C 0.046 3.954 12 N -0.366 5.366 13 C -0.363 4.363 14 H 0.101 0.899 15 C -0.262 4.262 16 N -0.602 5.602 17 Si 0.806 3.194 18 H -0.210 1.210 19 H -0.223 1.223 20 H -0.193 1.193 21 C -0.016 4.016 22 C -0.170 4.170 23 C -0.175 4.175 24 C -0.027 4.027 25 O -0.319 6.319 26 C -0.030 4.030 27 C -0.164 4.164 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.254 0.746 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.133 0.867 40 H 0.111 0.889 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.131 0.869 44 H 0.051 0.949 45 H 0.117 0.883 46 H 0.069 0.931 47 H 0.113 0.887 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.605 -24.885 -7.979 26.182 hybrid contribution -0.675 1.456 0.632 1.725 sum 0.930 -23.428 -7.347 24.571 Atomic orbital electron populations 1.21878 0.90191 1.04464 1.03080 1.20936 0.98754 0.89998 0.98478 1.21095 0.78926 0.88166 0.80969 1.90661 1.39288 1.78107 1.37058 1.45943 1.53331 1.10562 1.25757 1.22101 0.98115 0.81387 0.96200 0.88953 1.23939 0.99337 0.84794 0.96211 1.89111 1.94537 1.28427 1.16869 1.23460 0.95606 0.94624 0.82995 1.22076 0.86163 0.94337 0.92809 1.46205 1.03571 1.09057 1.77807 1.19390 0.89222 0.94306 1.33363 0.89942 1.25668 0.97629 1.00490 1.02368 1.70022 1.12339 1.25751 1.52085 0.85060 0.78199 0.77838 0.78255 1.21024 1.22297 1.19266 1.23158 0.96048 0.86877 0.95490 1.22926 1.01123 0.96917 0.96042 1.22348 0.95772 1.02914 0.96491 1.22783 0.94708 0.97188 0.87976 1.87881 1.77741 1.51762 1.14502 1.22824 0.94730 0.97977 0.87422 1.22026 0.96133 1.01370 0.96889 0.92674 0.89311 0.90545 0.74627 0.89285 0.91286 0.93514 0.95002 0.94262 0.93202 0.90721 0.86690 0.88881 0.88205 0.88058 0.86882 0.94910 0.88301 0.93124 0.88729 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.39 71.98 0.60 -0.69 16 2 C -0.08 -1.04 0.63 -52.81 -0.03 -1.08 16 3 C 0.52 10.20 5.15 87.66 0.45 10.65 16 4 O -0.57 -15.84 13.50 -3.06 -0.04 -15.89 16 5 N -0.70 -11.98 4.86 -437.25 -2.12 -14.11 16 6 C 0.13 2.99 3.49 46.11 0.16 3.16 16 7 H 0.09 2.42 7.56 -2.39 -0.02 2.40 16 8 C 0.04 1.01 7.38 72.51 0.54 1.54 16 9 O -0.37 -14.76 11.45 -148.98 -1.71 -16.47 16 10 C 0.07 2.69 1.30 -10.66 -0.01 2.68 16 11 C 0.17 8.22 6.94 86.09 0.60 8.82 16 12 N -0.64 -33.22 3.70 -741.03 -2.74 -35.96 16 13 C -0.23 -13.46 10.69 84.03 0.90 -12.56 16 14 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 15 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 16 N -0.95 -58.90 11.52 21.65 0.25 -58.65 16 17 Si 0.98 46.53 29.56 68.60 2.03 48.56 16 18 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 19 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 C 0.11 4.14 8.45 86.09 0.73 4.86 16 22 C -0.13 -3.22 6.24 31.34 0.20 -3.02 16 23 C -0.14 -1.37 4.87 30.75 0.15 -1.22 16 24 C 0.05 0.75 6.62 72.08 0.48 1.22 16 25 O -0.40 -7.94 10.77 -148.98 -1.60 -9.55 16 26 C 0.05 0.89 6.55 72.01 0.47 1.36 16 27 C -0.13 -1.90 4.56 30.69 0.14 -1.76 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.08 0.54 7.57 -2.39 -0.02 0.52 16 31 H 0.42 4.70 7.20 -92.71 -0.67 4.04 16 32 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.07 1.81 8.06 -2.39 -0.02 1.79 16 34 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.03 1.79 7.39 -2.39 -0.02 1.78 16 36 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 37 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.08 2.38 7.95 -2.39 -0.02 2.36 16 39 H 0.11 2.07 7.39 -2.39 -0.02 2.06 16 40 H 0.09 2.26 8.12 -2.39 -0.02 2.25 16 41 H 0.10 0.61 7.51 -2.39 -0.02 0.59 16 42 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.03 0.60 7.38 -2.39 -0.02 0.58 16 45 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 46 H 0.05 1.23 5.81 -2.39 -0.01 1.22 16 47 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.07 1.22 8.02 -2.39 -0.02 1.20 16 Total: -1.00 -77.35 372.79 0.17 -77.18 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.29 Total: 14.45 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 5.83 Total: 10.43 kcal Atomic # 7 Polarization: -104.10 SS G_CDS: -4.62 Total: -108.72 kcal Atomic # 8 Polarization: -38.55 SS G_CDS: -3.35 Total: -41.90 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -77.35 0.17 -77.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053958536.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.712 kcal (2) G-P(sol) polarization free energy of solvation -77.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds