Wall clock time and date at job start Tue Mar 31 2020 14:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50691 * 109.52469 * 2 1 4 4 O 1.21284 * 120.00500 * 240.00346 * 3 2 1 5 5 N 1.34777 * 120.00096 * 60.00147 * 3 2 1 6 6 C 1.46498 * 120.00673 * 179.97438 * 5 3 2 7 7 H 1.09002 * 110.52458 * 36.11858 * 6 5 3 8 8 C 1.54177 * 110.47212 * 273.54942 * 6 5 3 9 9 O 1.43986 * 107.44487 * 243.05157 * 8 6 5 10 10 C 1.42990 * 106.89488 * 335.22963 * 9 8 6 11 11 C 1.52713 * 116.34449 * 167.59802 * 10 9 8 12 12 N 1.47821 * 85.72782 * 95.34895 * 11 10 9 13 13 C 1.36938 * 134.38648 * 203.73643 * 12 11 10 14 14 H 1.07998 * 119.99877 * 180.02562 * 13 12 11 15 15 C 1.38812 * 119.99924 * 0.02562 * 13 12 11 16 16 N 1.31612 * 119.99919 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99901 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46893 * 60.00538 * 17 15 13 19 19 H 1.48496 * 109.47062 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47446 * 300.00430 * 17 15 13 21 21 C 1.47816 * 91.22644 * 23.74698 * 12 11 10 22 22 C 1.53816 * 105.24940 * 38.10983 * 10 9 8 23 23 C 1.53180 * 109.51953 * 239.87591 * 2 1 3 24 24 C 1.53311 * 108.96795 * 183.11045 * 23 2 1 25 25 C 1.53088 * 109.19225 * 56.94263 * 24 23 2 26 26 O 1.42904 * 109.41686 * 302.39039 * 25 24 23 27 27 C 1.42908 * 114.09476 * 61.16157 * 26 25 24 28 28 H 1.09007 * 109.47093 * 59.99341 * 1 2 3 29 29 H 1.08997 * 109.47406 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47041 * 299.99743 * 1 2 3 31 31 H 0.97009 * 119.99884 * 0.02562 * 5 3 2 32 32 H 1.09004 * 109.85370 * 2.52550 * 8 6 5 33 33 H 1.08998 * 109.85530 * 123.58211 * 8 6 5 34 34 H 1.09004 * 113.83491 * 209.54405 * 11 10 9 35 35 H 1.08995 * 113.83563 * 341.14188 * 11 10 9 36 36 H 0.97002 * 119.99968 * 179.97438 * 16 15 13 37 37 H 1.09001 * 113.83225 * 222.05765 * 21 12 11 38 38 H 1.08996 * 113.94573 * 90.47255 * 21 12 11 39 39 H 1.08997 * 110.94363 * 206.48166 * 22 10 9 40 40 H 1.08999 * 110.97263 * 82.80312 * 22 10 9 41 41 H 1.09001 * 109.54887 * 302.92259 * 23 2 1 42 42 H 1.09004 * 109.54025 * 63.18604 * 23 2 1 43 43 H 1.08999 * 109.50299 * 297.02940 * 24 23 2 44 44 H 1.08998 * 109.56228 * 176.89118 * 24 23 2 45 45 H 1.09003 * 109.47969 * 182.41022 * 25 24 23 46 46 H 1.08996 * 109.49201 * 62.38508 * 25 24 23 47 47 H 1.09000 * 109.48111 * 178.85560 * 27 26 25 48 48 H 1.09002 * 109.48873 * 58.82737 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0336 1.4203 0.0000 4 8 2.7312 1.8164 -0.9096 5 7 1.7089 2.2504 1.0108 6 6 2.1989 3.6310 1.0112 7 1 2.2244 4.0278 -0.0037 8 6 3.5978 3.7065 1.6550 9 8 3.4865 4.5247 2.8346 10 6 2.3611 5.3850 2.6390 11 6 1.8641 6.1409 3.8693 12 7 2.7060 7.2563 3.3875 13 6 3.3012 8.3348 3.9855 14 1 3.8831 9.0268 3.3948 15 6 3.1566 8.5387 5.3510 16 7 2.4478 7.6951 6.0708 17 14 3.9679 10.0104 6.1666 18 1 3.4473 11.2619 5.5600 19 1 3.6639 10.0007 7.6201 20 1 5.4378 9.9384 5.9683 21 6 2.6490 6.7429 2.0025 22 6 1.3118 4.5210 1.9190 23 6 2.0418 -0.7246 -1.2488 24 6 3.5729 -0.7856 -1.1971 25 6 4.0055 -1.4795 0.0970 26 8 3.4695 -0.7725 1.2173 27 6 2.0416 -0.7243 1.2479 28 1 -0.3634 0.5140 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.1512 1.9336 1.7386 32 1 3.9339 2.7063 1.9285 33 1 4.3028 4.1576 0.9568 34 1 0.7957 6.3564 3.8520 35 1 2.1986 5.7128 4.8142 36 1 2.3471 7.8374 7.0251 37 1 3.6023 6.7893 1.4760 38 1 1.8194 7.1398 1.4174 39 1 0.6409 5.1393 1.3227 40 1 0.7508 3.9149 2.6304 41 1 1.6375 -1.7365 -1.2747 42 1 1.7269 -0.1818 -2.1400 43 1 3.9784 0.2259 -1.2213 44 1 3.9448 -1.3477 -2.0537 45 1 5.0938 -1.4873 0.1590 46 1 3.6338 -2.5041 0.1021 47 1 1.7150 -0.1881 2.1389 48 1 1.6438 -1.7390 1.2680 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053968146.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:44 Heat of formation + Delta-G solvation = -92.882740 kcal Electronic energy + Delta-G solvation = -29051.292481 eV Core-core repulsion = 25107.151622 eV Total energy + Delta-G solvation = -3944.140859 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.01554 -41.22811 -39.22493 -37.75493 -35.72678 -35.44684 -34.13977 -33.16923 -31.44146 -29.79521 -27.86386 -27.55567 -26.67582 -26.04231 -24.81380 -23.77626 -22.84804 -21.96997 -20.68829 -20.42797 -18.76421 -18.04432 -17.74558 -17.09195 -16.97645 -16.67340 -16.61133 -16.46819 -15.99530 -15.86335 -15.45537 -15.18756 -15.03431 -14.92594 -14.55963 -14.40437 -13.60576 -13.55590 -13.33814 -13.23488 -13.15257 -12.98383 -12.95131 -12.90418 -12.81456 -12.74195 -12.66628 -12.30499 -11.96163 -11.87877 -11.63460 -11.53187 -11.44390 -11.33344 -10.93701 -10.68659 -10.55962 -10.31990 -10.00873 -8.93168 -7.90577 -5.23174 1.43832 1.48275 1.54091 1.63179 2.10719 2.46965 2.82686 2.98064 3.28071 3.37842 3.40445 3.51672 3.63879 3.73414 3.83528 3.88441 3.99439 4.06671 4.14754 4.19241 4.28060 4.48484 4.55280 4.56308 4.65178 4.70481 4.71623 4.73467 4.76022 4.78462 4.89000 4.89767 4.94063 4.96257 4.97931 5.05322 5.18999 5.21328 5.25641 5.28007 5.41321 5.49927 5.54572 5.92018 6.18480 6.24253 6.55067 6.91404 7.26173 7.59646 8.53916 9.26519 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.028692 B = 0.002644 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.633729 B =10585.865856 C =10716.935065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 C 0.527 3.473 4 O -0.572 6.572 5 N -0.707 5.707 6 C 0.130 3.870 7 H 0.098 0.902 8 C 0.038 3.962 9 O -0.370 6.370 10 C 0.076 3.924 11 C 0.174 3.826 12 N -0.640 5.640 13 C -0.239 4.239 14 H 0.080 0.920 15 C -0.067 4.067 16 N -0.952 5.952 17 Si 0.980 3.020 18 H -0.274 1.274 19 H -0.291 1.291 20 H -0.280 1.280 21 C 0.102 3.898 22 C -0.128 4.128 23 C -0.094 4.094 24 C -0.167 4.167 25 C 0.057 3.943 26 O -0.406 6.406 27 C 0.067 3.933 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.413 0.587 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.040 0.960 36 H 0.249 0.751 37 H 0.044 0.956 38 H 0.072 0.928 39 H 0.111 0.889 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.073 0.927 47 H 0.104 0.896 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.348 -23.092 -14.684 28.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.115 4.115 3 C 0.315 3.685 4 O -0.451 6.451 5 N -0.359 5.359 6 C 0.024 3.976 7 H 0.116 0.884 8 C -0.040 4.040 9 O -0.288 6.288 10 C 0.035 3.965 11 C 0.049 3.951 12 N -0.366 5.366 13 C -0.367 4.367 14 H 0.098 0.902 15 C -0.260 4.260 16 N -0.601 5.601 17 Si 0.808 3.192 18 H -0.200 1.200 19 H -0.217 1.217 20 H -0.207 1.207 21 C -0.023 4.023 22 C -0.167 4.167 23 C -0.132 4.132 24 C -0.205 4.205 25 C -0.019 4.019 26 O -0.325 6.325 27 C -0.010 4.010 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.095 0.905 31 H 0.250 0.750 32 H 0.101 0.899 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.129 0.871 40 H 0.122 0.878 41 H 0.115 0.885 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.103 0.897 45 H 0.108 0.892 46 H 0.091 0.909 47 H 0.122 0.878 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.506 -22.516 -14.755 27.695 hybrid contribution 0.361 1.013 0.597 1.230 sum -6.145 -21.503 -14.158 26.468 Atomic orbital electron populations 1.21824 0.89369 1.04841 1.03421 1.21573 0.99442 0.90933 0.99575 1.20928 0.78782 0.88014 0.80772 1.90633 1.39041 1.77757 1.37672 1.45969 1.53412 1.10925 1.25620 1.22108 0.92326 0.82605 1.00539 0.88350 1.23687 0.97811 0.95249 0.87207 1.88783 1.49994 1.51290 1.38771 1.23368 0.86059 0.89754 0.97274 1.22067 0.93508 0.84622 0.94871 1.46245 1.57863 1.28270 1.04263 1.19355 1.24471 1.01198 0.91691 0.90237 1.25627 1.01581 1.02064 0.96697 1.69982 1.45364 1.38918 1.05832 0.85132 0.78082 0.78949 0.77035 1.20016 1.21666 1.20668 1.23138 0.99562 0.91425 0.88171 1.23098 0.97241 0.97770 0.98547 1.21484 0.95101 1.00833 0.95761 1.22361 0.97104 1.02221 0.98797 1.22732 0.99260 0.95073 0.84867 1.87974 1.21147 1.77064 1.46314 1.22863 0.80742 1.01353 0.96011 0.92103 0.88833 0.90496 0.74957 0.89945 0.92815 0.93244 0.94129 0.94169 0.93791 0.91065 0.87093 0.87845 0.88533 0.91908 0.92239 0.89725 0.89219 0.90901 0.87824 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.38 71.98 0.60 -0.53 16 2 C -0.11 -1.59 0.63 -52.84 -0.03 -1.62 16 3 C 0.53 11.66 5.90 87.65 0.52 12.18 16 4 O -0.57 -17.21 13.55 -3.04 -0.04 -17.25 16 5 N -0.71 -14.27 4.82 -437.40 -2.11 -16.38 16 6 C 0.13 3.33 3.35 46.08 0.15 3.48 16 7 H 0.10 2.62 7.67 -2.39 -0.02 2.60 16 8 C 0.04 1.25 7.52 72.38 0.54 1.79 16 9 O -0.37 -15.48 11.33 -148.98 -1.69 -17.17 16 10 C 0.08 2.95 1.27 -10.64 -0.01 2.93 16 11 C 0.17 8.48 7.05 86.03 0.61 9.09 16 12 N -0.64 -34.59 3.71 -744.75 -2.76 -37.35 16 13 C -0.24 -14.16 10.70 84.03 0.90 -13.26 16 14 H 0.08 4.53 7.83 -2.91 -0.02 4.50 16 15 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 16 N -0.95 -59.15 11.40 21.65 0.25 -58.90 16 17 Si 0.98 47.43 29.55 68.60 2.03 49.46 16 18 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 19 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 20 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 21 C 0.10 4.29 8.50 86.03 0.73 5.02 16 22 C -0.13 -3.30 6.21 31.56 0.20 -3.10 16 23 C -0.09 -1.35 4.46 30.76 0.14 -1.21 16 24 C -0.17 -2.94 5.82 30.73 0.18 -2.76 16 25 C 0.06 0.92 6.84 72.01 0.49 1.41 16 26 O -0.41 -8.36 10.45 -148.98 -1.56 -9.91 16 27 C 0.07 0.90 5.46 72.01 0.39 1.29 16 28 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.08 0.47 7.57 -2.38 -0.02 0.45 16 31 H 0.41 6.11 7.17 -92.70 -0.66 5.44 16 32 H 0.08 2.67 7.93 -2.39 -0.02 2.65 16 33 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 35 H 0.04 2.29 7.20 -2.39 -0.02 2.27 16 36 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 37 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.07 2.61 8.00 -2.39 -0.02 2.59 16 39 H 0.11 2.42 7.95 -2.39 -0.02 2.40 16 40 H 0.10 2.28 7.74 -2.39 -0.02 2.26 16 41 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.06 1.06 8.02 -2.38 -0.02 1.04 16 43 H 0.06 1.52 5.82 -2.39 -0.01 1.51 16 44 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.10 1.21 7.51 -2.39 -0.02 1.20 16 48 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -79.45 373.89 0.28 -79.17 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.29 Total: 17.12 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 5.87 Total: 11.22 kcal Atomic # 7 Polarization: -108.01 SS G_CDS: -4.62 Total: -112.64 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -3.29 Total: -44.33 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -79.45 0.28 -79.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053968146.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.713 kcal (2) G-P(sol) polarization free energy of solvation -79.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds