Wall clock time and date at job start Tue Mar 31 2020 14:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.52633 * 2 1 4 4 O 1.21285 * 120.00327 * 239.87846 * 3 2 1 5 5 N 1.34777 * 119.99824 * 59.86939 * 3 2 1 6 6 C 1.46503 * 119.99908 * 180.02562 * 5 3 2 7 7 H 1.08995 * 110.77327 * 328.53837 * 6 5 3 8 8 C 1.55047 * 111.04872 * 92.19925 * 6 5 3 9 9 O 1.44573 * 103.64420 * 81.64484 * 8 6 5 10 10 C 1.42978 * 106.77400 * 39.22759 * 9 8 6 11 11 C 1.53220 * 115.35740 * 203.79499 * 10 9 8 12 12 N 1.47724 * 86.02755 * 266.45438 * 11 10 9 13 13 C 1.36932 * 134.43176 * 155.90820 * 12 11 10 14 14 H 1.07998 * 119.99918 * 359.97438 * 13 12 11 15 15 C 1.38813 * 119.99837 * 179.97438 * 13 12 11 16 16 N 1.31618 * 120.00318 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99852 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47036 * 89.99982 * 17 15 13 19 19 H 1.48501 * 109.47086 * 209.99855 * 17 15 13 20 20 H 1.48497 * 109.47249 * 330.00228 * 17 15 13 21 21 C 1.47964 * 91.03424 * 335.98821 * 12 11 10 22 22 C 1.53431 * 108.16915 * 334.19333 * 10 9 8 23 23 C 1.53181 * 109.52225 * 239.87376 * 2 1 3 24 24 C 1.53180 * 109.03600 * 183.05312 * 23 2 1 25 25 C 1.53093 * 109.16627 * 56.97982 * 24 23 2 26 26 O 1.42900 * 109.41374 * 302.39450 * 25 24 23 27 27 C 1.42901 * 114.10063 * 61.15505 * 26 25 24 28 28 H 1.08997 * 109.46736 * 59.99609 * 1 2 3 29 29 H 1.09000 * 109.47013 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46522 * 300.00125 * 1 2 3 31 31 H 0.97001 * 120.00289 * 0.02562 * 5 3 2 32 32 H 1.08996 * 110.59039 * 200.18483 * 8 6 5 33 33 H 1.08997 * 110.59407 * 322.95622 * 8 6 5 34 34 H 1.09002 * 113.80688 * 20.75917 * 11 10 9 35 35 H 1.09001 * 113.80031 * 152.15158 * 11 10 9 36 36 H 0.96994 * 120.00159 * 179.97438 * 16 15 13 37 37 H 1.09007 * 113.69604 * 269.76048 * 21 12 11 38 38 H 1.09004 * 113.98125 * 138.30462 * 21 12 11 39 39 H 1.08999 * 110.55306 * 120.26106 * 22 10 9 40 40 H 1.09006 * 110.55736 * 242.92885 * 22 10 9 41 41 H 1.09003 * 109.54195 * 302.91623 * 23 2 1 42 42 H 1.08994 * 109.54082 * 63.18411 * 23 2 1 43 43 H 1.09004 * 109.51914 * 176.88867 * 24 23 2 44 44 H 1.09002 * 109.51781 * 297.07169 * 24 23 2 45 45 H 1.08999 * 109.47694 * 62.37393 * 25 24 23 46 46 H 1.08992 * 109.47909 * 182.39890 * 25 24 23 47 47 H 1.09004 * 109.48225 * 178.85931 * 27 26 25 48 48 H 1.08995 * 109.48358 * 58.82634 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0337 1.4203 0.0000 4 8 2.7332 1.8157 -0.9085 5 7 1.7067 2.2512 1.0095 6 6 2.1959 3.6322 1.0093 7 1 3.1698 3.6972 0.5242 8 6 1.1766 4.5839 0.3316 9 8 0.2143 4.8528 1.3765 10 6 0.9534 4.9901 2.5928 11 6 0.1626 4.7142 3.8758 12 7 -0.0903 6.1692 3.9106 13 6 -1.0585 6.9608 4.4682 14 1 -1.8646 6.5130 5.0303 15 6 -1.0038 8.3390 4.3110 16 7 -0.0211 8.8848 3.6264 17 14 -2.3250 9.4189 5.0711 18 1 -1.9162 9.8086 6.4445 19 1 -2.5043 10.6385 4.2431 20 1 -3.6048 8.6680 5.1299 21 6 1.1206 6.4261 3.1000 22 6 2.2586 4.1961 2.4516 23 6 2.0419 -0.7246 -1.2487 24 6 3.5717 -0.7852 -1.1994 25 6 4.0058 -1.4795 0.0942 26 8 3.4708 -0.7729 1.2151 27 6 2.0430 -0.7247 1.2472 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.1475 1.9350 1.7363 32 1 1.6649 5.5051 0.0139 33 1 0.6984 4.0929 -0.5159 34 1 -0.7346 4.1153 3.7195 35 1 0.7761 4.3544 4.7018 36 1 0.0169 9.8477 3.5163 37 1 2.0211 6.5807 3.6946 38 1 0.9846 7.1840 2.3284 39 1 3.1206 4.8529 2.5685 40 1 2.2947 3.3861 3.1803 41 1 1.6376 -1.7366 -1.2745 42 1 1.7270 -0.1819 -2.1400 43 1 3.9418 -1.3476 -2.0566 44 1 3.9772 0.2264 -1.2237 45 1 3.6339 -2.5041 0.0991 46 1 5.0940 -1.4874 0.1549 47 1 1.7172 -0.1888 2.1387 48 1 1.6454 -1.7394 1.2673 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053968147.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:48 Heat of formation + Delta-G solvation = -94.079764 kcal Electronic energy + Delta-G solvation = -29184.522101 eV Core-core repulsion = 25240.329335 eV Total energy + Delta-G solvation = -3944.192766 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.99079 -41.14166 -39.17956 -37.71577 -35.57864 -35.39671 -34.12980 -33.15403 -31.48316 -29.78452 -27.87466 -27.40573 -26.67314 -26.01495 -24.81595 -23.74581 -22.83024 -21.89071 -20.61887 -20.49717 -18.72096 -18.05415 -17.78315 -17.06970 -16.99836 -16.70686 -16.64360 -16.17129 -15.92387 -15.82798 -15.42822 -15.12963 -14.98339 -14.88557 -14.60857 -14.34428 -13.68325 -13.57314 -13.34421 -13.22715 -13.13743 -13.02751 -12.95507 -12.87413 -12.80427 -12.59924 -12.55913 -12.25496 -12.00506 -11.92756 -11.64409 -11.52468 -11.42446 -11.30781 -10.91180 -10.68286 -10.58424 -10.30483 -9.89528 -8.91158 -7.89354 -5.21722 1.43892 1.46718 1.55077 1.64935 2.13754 2.47299 2.84354 2.99344 3.28682 3.39578 3.51830 3.59762 3.66190 3.71726 3.74177 3.84451 3.99756 4.04742 4.15252 4.29357 4.38369 4.50267 4.57232 4.62051 4.66775 4.71974 4.72718 4.74818 4.76058 4.79830 4.89280 4.90990 4.94335 4.96185 4.98899 5.05808 5.17552 5.21679 5.26630 5.28305 5.43447 5.51947 5.56700 5.93565 6.19604 6.25083 6.57229 6.91931 7.27212 7.61654 8.56793 9.27908 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.030202 B = 0.002713 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.859786 B =10319.693872 C =10406.676384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.112 4.112 3 C 0.529 3.471 4 O -0.573 6.573 5 N -0.703 5.703 6 C 0.125 3.875 7 H 0.104 0.896 8 C 0.035 3.965 9 O -0.364 6.364 10 C 0.078 3.922 11 C 0.127 3.873 12 N -0.640 5.640 13 C -0.231 4.231 14 H 0.084 0.916 15 C -0.072 4.072 16 N -0.955 5.955 17 Si 0.979 3.021 18 H -0.284 1.284 19 H -0.296 1.296 20 H -0.268 1.268 21 C 0.145 3.855 22 C -0.132 4.132 23 C -0.095 4.095 24 C -0.166 4.166 25 C 0.058 3.942 26 O -0.401 6.401 27 C 0.070 3.930 28 H 0.054 0.946 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.411 0.589 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.247 0.753 37 H 0.035 0.965 38 H 0.034 0.966 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.095 0.905 42 H 0.058 0.942 43 H 0.084 0.916 44 H 0.061 0.939 45 H 0.071 0.929 46 H 0.094 0.906 47 H 0.106 0.894 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.068 -25.704 -7.390 27.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 C 0.317 3.683 4 O -0.453 6.453 5 N -0.355 5.355 6 C 0.019 3.981 7 H 0.122 0.878 8 C -0.042 4.042 9 O -0.283 6.283 10 C 0.037 3.963 11 C 0.002 3.998 12 N -0.366 5.366 13 C -0.359 4.359 14 H 0.102 0.898 15 C -0.264 4.264 16 N -0.605 5.605 17 Si 0.807 3.193 18 H -0.210 1.210 19 H -0.223 1.223 20 H -0.193 1.193 21 C 0.020 3.980 22 C -0.171 4.171 23 C -0.133 4.133 24 C -0.204 4.204 25 C -0.019 4.019 26 O -0.320 6.320 27 C -0.007 4.007 28 H 0.073 0.927 29 H 0.113 0.887 30 H 0.089 0.911 31 H 0.247 0.753 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.118 0.882 40 H 0.129 0.871 41 H 0.113 0.887 42 H 0.077 0.923 43 H 0.102 0.898 44 H 0.080 0.920 45 H 0.089 0.911 46 H 0.112 0.888 47 H 0.124 0.876 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.271 -25.039 -7.827 26.973 hybrid contribution -0.757 1.344 0.294 1.571 sum 5.514 -23.695 -7.533 25.468 Atomic orbital electron populations 1.21816 0.90104 1.04673 1.03023 1.21563 0.98832 0.91233 0.99921 1.20866 0.78738 0.87929 0.80809 1.90618 1.39307 1.78126 1.37211 1.45844 1.53100 1.10730 1.25791 1.22256 0.97894 0.81575 0.96341 0.87846 1.24051 0.90833 0.98025 0.91317 1.88829 1.30921 1.91815 1.16709 1.23388 0.91317 0.95460 0.86150 1.22908 0.97536 0.85901 0.93408 1.46227 1.25523 1.02621 1.62258 1.19411 1.01864 0.88588 1.26080 0.89819 1.25642 1.00950 0.97830 1.01991 1.70017 1.34324 1.09762 1.46358 0.85064 0.78824 0.77998 0.77374 1.21050 1.22273 1.19314 1.22681 0.88467 0.94408 0.92462 1.23040 0.97247 1.00642 0.96158 1.21462 0.95539 1.00689 0.95609 1.22340 0.96663 1.02382 0.98999 1.22733 0.99418 0.94978 0.84723 1.87950 1.20845 1.77062 1.46177 1.22817 0.80853 1.01197 0.95810 0.92694 0.88675 0.91055 0.75275 0.91820 0.89085 0.92596 0.90709 0.94443 0.94780 0.94793 0.88244 0.87108 0.88657 0.92314 0.89758 0.91998 0.91061 0.88754 0.87604 0.89347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.38 71.98 0.60 -1.05 16 2 C -0.11 -1.75 0.63 -52.84 -0.03 -1.78 16 3 C 0.53 12.26 5.91 87.66 0.52 12.78 16 4 O -0.57 -17.46 13.48 -3.05 -0.04 -17.50 16 5 N -0.70 -15.27 4.93 -436.00 -2.15 -17.42 16 6 C 0.13 3.21 3.50 46.37 0.16 3.38 16 7 H 0.10 2.74 7.54 -2.39 -0.02 2.72 16 8 C 0.04 1.10 7.42 72.68 0.54 1.64 16 9 O -0.36 -14.25 11.29 -148.98 -1.68 -15.93 16 10 C 0.08 2.86 1.54 -10.47 -0.02 2.85 16 11 C 0.13 4.96 8.33 86.21 0.72 5.68 16 12 N -0.64 -33.70 3.72 -729.51 -2.71 -36.41 16 13 C -0.23 -13.40 10.70 84.03 0.90 -12.50 16 14 H 0.08 4.61 7.83 -2.91 -0.02 4.59 16 15 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 16 N -0.96 -59.75 11.42 21.65 0.25 -59.50 16 17 Si 0.98 47.13 29.55 68.60 2.03 49.16 16 18 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 19 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 21 C 0.15 7.07 6.90 86.17 0.59 7.66 16 22 C -0.13 -3.44 6.13 31.42 0.19 -3.25 16 23 C -0.10 -1.46 4.45 30.72 0.14 -1.32 16 24 C -0.17 -2.83 5.81 30.69 0.18 -2.65 16 25 C 0.06 0.84 6.84 72.01 0.49 1.34 16 26 O -0.40 -7.50 10.45 -148.98 -1.56 -9.05 16 27 C 0.07 0.92 5.47 72.01 0.39 1.31 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 0.80 7.56 -2.39 -0.02 0.78 16 31 H 0.41 7.28 7.45 -92.71 -0.69 6.59 16 32 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 34 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.08 2.52 8.10 -2.39 -0.02 2.50 16 36 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 37 H 0.03 1.64 8.07 -2.38 -0.02 1.62 16 38 H 0.03 1.92 7.21 -2.39 -0.02 1.90 16 39 H 0.10 2.50 7.89 -2.39 -0.02 2.48 16 40 H 0.11 2.32 7.81 -2.38 -0.02 2.30 16 41 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.06 1.09 8.02 -2.39 -0.02 1.07 16 43 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 44 H 0.06 1.52 5.81 -2.39 -0.01 1.51 16 45 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.11 1.18 7.53 -2.38 -0.02 1.16 16 48 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -77.92 374.24 0.24 -77.68 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.26 Total: 18.67 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 5.85 Total: 10.31 kcal Atomic # 7 Polarization: -108.72 SS G_CDS: -4.61 Total: -113.33 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -3.28 Total: -42.49 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -77.92 0.24 -77.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053968147.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.398 kcal (2) G-P(sol) polarization free energy of solvation -77.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds