Wall clock time and date at job start Tue Mar 31 2020 13:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00263 * 2 1 4 4 H 1.48498 * 109.46902 * 274.98925 * 3 2 1 5 5 H 1.48497 * 109.46963 * 34.99103 * 3 2 1 6 6 H 1.48505 * 109.46938 * 154.99040 * 3 2 1 7 7 C 1.38819 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99639 * 185.08412 * 7 2 1 9 9 N 1.36938 * 119.99641 * 5.07872 * 7 2 1 10 10 C 1.47718 * 134.42746 * 173.50773 * 9 7 2 11 11 C 1.53238 * 85.89140 * 155.91794 * 10 9 7 12 12 C 1.47718 * 134.43577 * 353.55354 * 9 7 2 13 13 C 1.53440 * 114.98898 * 139.52100 * 11 10 9 14 14 C 1.54996 * 103.97333 * 128.78189 * 13 11 10 15 15 H 1.09001 * 110.86718 * 221.05136 * 14 13 11 16 16 N 1.46498 * 110.87327 * 97.36367 * 14 13 11 17 17 C 1.34777 * 119.99620 * 154.99687 * 16 14 13 18 18 O 1.21279 * 120.00476 * 0.02562 * 17 16 14 19 19 C 1.50704 * 119.99927 * 180.02562 * 17 16 14 20 20 C 1.52994 * 109.47527 * 180.02562 * 19 17 16 21 21 H 1.09002 * 109.52358 * 54.87428 * 20 19 17 22 22 C 1.53174 * 109.52733 * 175.00238 * 20 19 17 23 23 C 1.53178 * 109.03994 * 176.88853 * 22 20 19 24 24 C 1.53095 * 109.15963 * 303.01752 * 23 22 20 25 25 O 1.42901 * 109.41682 * 57.60719 * 24 23 22 26 26 C 1.42907 * 114.09838 * 298.84604 * 25 24 23 27 27 C 1.55308 * 102.01045 * 339.28879 * 14 13 11 28 28 O 1.42970 * 115.33250 * 266.48493 * 11 10 9 29 29 H 0.97002 * 119.99834 * 359.97438 * 1 2 3 30 30 H 1.08998 * 113.80859 * 41.67664 * 10 9 7 31 31 H 1.09001 * 113.91236 * 270.17453 * 10 9 7 32 32 H 1.09001 * 113.80349 * 89.84111 * 12 9 7 33 33 H 1.08996 * 113.80718 * 318.33090 * 12 9 7 34 34 H 1.08996 * 110.54738 * 247.43832 * 13 11 10 35 35 H 1.09000 * 110.55151 * 10.11572 * 13 11 10 36 36 H 0.96989 * 120.00192 * 335.00139 * 16 14 13 37 37 H 1.09004 * 109.47020 * 300.00210 * 19 17 16 38 38 H 1.09000 * 109.46985 * 60.00135 * 19 17 16 39 39 H 1.09006 * 109.54035 * 296.75677 * 22 20 19 40 40 H 1.08997 * 109.53955 * 56.92412 * 22 20 19 41 41 H 1.08994 * 109.52512 * 62.92303 * 23 22 20 42 42 H 1.09001 * 109.52297 * 183.05063 * 23 22 20 43 43 H 1.08993 * 109.47928 * 177.59204 * 24 23 22 44 44 H 1.09005 * 109.48168 * 297.61579 * 24 23 22 45 45 H 1.08997 * 109.47378 * 301.17037 * 26 25 24 46 46 H 1.09007 * 109.47851 * 181.14126 * 26 25 24 47 47 H 1.09002 * 110.48294 * 277.91421 * 27 14 13 48 48 H 1.08996 * 110.75485 * 155.10733 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5045 2.6199 0.8029 6 1 3.5966 1.4119 0.5919 7 6 2.0102 -1.2022 -0.0005 8 1 3.0870 -1.2041 0.0823 9 7 1.3295 -2.3857 -0.1061 10 6 1.7304 -3.7992 -0.2584 11 6 0.3714 -4.1371 0.3638 12 6 -0.0996 -2.7596 -0.1139 13 6 -0.3552 -5.3286 -0.2739 14 6 -0.7200 -6.2329 0.9308 15 1 -0.5580 -7.2837 0.6906 16 7 -2.1018 -6.0006 1.3584 17 6 -2.7783 -6.9692 2.0070 18 8 -2.2430 -8.0328 2.2372 19 6 -4.2000 -6.7305 2.4463 20 6 -4.7314 -7.9783 3.1544 21 1 -4.0618 -8.2463 3.9717 22 6 -6.1301 -7.6947 3.7107 23 6 -6.6828 -8.9730 4.3485 24 6 -6.6887 -10.0932 3.3050 25 8 -5.3633 -10.2848 2.8062 26 6 -4.8126 -9.1369 2.1571 27 6 0.2826 -5.7487 2.0136 28 8 0.3772 -4.3250 1.7810 29 1 -0.4850 0.8401 0.0004 30 1 2.5809 -4.0846 0.3608 31 1 1.8318 -4.1205 -1.2950 32 1 -0.5467 -2.7679 -1.1080 33 1 -0.6993 -2.2210 0.6197 34 1 -1.2562 -4.9960 -0.7893 35 1 0.3054 -5.8559 -0.9621 36 1 -2.5298 -5.1499 1.1746 37 1 -4.2312 -5.8833 3.1315 38 1 -4.8184 -6.5158 1.5748 39 1 -6.0708 -6.9081 4.4629 40 1 -6.7867 -7.3761 2.9011 41 1 -6.0530 -9.2621 5.1897 42 1 -7.6995 -8.7951 4.6989 43 1 -7.0410 -11.0165 3.7648 44 1 -7.3507 -9.8209 2.4829 45 1 -5.4499 -8.8520 1.3200 46 1 -3.8133 -9.3714 1.7900 47 1 1.2531 -6.2250 1.8751 48 1 -0.1023 -5.9490 3.0135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054011500.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:23 Heat of formation + Delta-G solvation = -77.138599 kcal Electronic energy + Delta-G solvation = -28069.271942 eV Core-core repulsion = 24125.813800 eV Total energy + Delta-G solvation = -3943.458142 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.55973 -39.78361 -38.79675 -36.21261 -34.65522 -34.24258 -32.36356 -32.09917 -30.65459 -28.40260 -27.45137 -25.70827 -25.25454 -24.95315 -23.32214 -22.10739 -21.13301 -20.51245 -20.21390 -19.03293 -17.20028 -16.82958 -16.60092 -16.48131 -16.29425 -15.47506 -15.36431 -15.08464 -14.72498 -14.56189 -14.48579 -14.33513 -13.94827 -13.45685 -13.17427 -12.98816 -12.91017 -12.84541 -12.62324 -12.20807 -11.90576 -11.54422 -11.49467 -11.41965 -11.37077 -11.25280 -11.13020 -11.07179 -10.85008 -10.63055 -10.54696 -10.27729 -9.78858 -9.72485 -9.66261 -9.60305 -9.23741 -8.81689 -8.70780 -6.87001 -5.77660 -3.07746 2.52864 3.06918 3.39880 3.44911 3.47069 3.69180 4.21956 4.37519 4.42471 4.46618 4.50013 4.61934 4.63085 4.77919 4.90744 5.00681 5.02327 5.09927 5.16419 5.21368 5.23487 5.30813 5.33030 5.35382 5.47113 5.50061 5.57032 5.58673 5.69131 5.73014 5.77945 5.87045 5.92022 5.99210 6.06706 6.08659 6.33483 6.44830 6.54795 6.63257 6.88257 7.00349 7.16806 7.44625 7.50813 7.70380 7.98393 8.14547 9.04927 9.71157 10.59395 11.40651 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.026907 B = 0.002290 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.370220 B =12222.419362 C =12846.262473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.219 4.219 8 H 0.080 0.920 9 N -0.605 5.605 10 C 0.104 3.896 11 C 0.054 3.946 12 C 0.175 3.825 13 C -0.147 4.147 14 C 0.110 3.890 15 H 0.104 0.896 16 N -0.713 5.713 17 C 0.512 3.488 18 O -0.542 6.542 19 C -0.138 4.138 20 C -0.106 4.106 21 H 0.088 0.912 22 C -0.120 4.120 23 C -0.156 4.156 24 C 0.057 3.943 25 O -0.380 6.380 26 C 0.062 3.938 27 C 0.035 3.965 28 O -0.333 6.333 29 H 0.253 0.747 30 H 0.048 0.952 31 H 0.042 0.958 32 H 0.040 0.960 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.406 0.594 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.048 0.952 45 H 0.043 0.957 46 H 0.112 0.888 47 H 0.065 0.935 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.941 -17.884 4.116 23.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.346 4.346 8 H 0.098 0.902 9 N -0.331 5.331 10 C -0.023 4.023 11 C 0.013 3.987 12 C 0.050 3.950 13 C -0.186 4.186 14 C 0.005 3.995 15 H 0.122 0.878 16 N -0.364 5.364 17 C 0.299 3.701 18 O -0.420 6.420 19 C -0.178 4.178 20 C -0.125 4.125 21 H 0.107 0.893 22 C -0.157 4.157 23 C -0.193 4.193 24 C -0.020 4.020 25 O -0.299 6.299 26 C -0.015 4.015 27 C -0.043 4.043 28 O -0.251 6.251 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.241 0.759 37 H 0.118 0.882 38 H 0.113 0.887 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.109 0.891 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.130 0.870 47 H 0.083 0.917 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.390 -18.279 4.486 23.098 hybrid contribution 0.134 1.636 -0.353 1.679 sum -13.256 -16.643 4.132 21.675 Atomic orbital electron populations 1.69819 1.05041 1.25308 1.56664 1.24798 0.95706 0.97505 1.02460 0.86110 0.78779 0.83549 0.77439 1.21667 1.21703 1.20559 1.19002 0.90735 0.81920 1.42974 0.90223 1.45768 1.02037 1.00600 1.84647 1.23025 0.95342 0.86986 0.96906 1.23878 0.97360 0.96001 0.81462 1.22288 0.88723 0.86370 0.97628 1.23147 1.01839 0.96402 0.97257 1.22566 0.81527 1.00815 0.94597 0.87831 1.46005 1.13980 1.17822 1.58615 1.20692 0.88334 0.83802 0.77269 1.90676 1.70356 1.25476 1.55497 1.21708 0.93347 1.00239 1.02483 1.21545 0.96926 0.94428 0.99619 0.89327 1.21669 0.95757 0.97702 1.00578 1.22178 1.01828 0.95879 0.99439 1.22579 0.84744 0.98871 0.95826 1.87982 1.29789 1.36192 1.75921 1.22870 1.00097 0.85491 0.93003 1.24006 0.97709 0.83434 0.99188 1.88923 1.94226 1.20878 1.21120 0.93690 0.93428 0.94074 0.94208 0.90624 0.89670 0.89372 0.75882 0.88205 0.88673 0.91188 0.91668 0.90954 0.90905 0.89141 0.93408 0.93893 0.86986 0.91678 0.89369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.31 11.51 55.49 0.64 -26.67 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 22.34 29.56 -169.99 -5.02 17.31 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.22 -6.25 10.69 -15.06 -0.16 -6.41 16 8 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 9 N -0.60 -15.72 3.70 -181.58 -0.67 -16.39 16 10 C 0.10 2.13 8.34 -3.26 -0.03 2.10 16 11 C 0.05 1.00 1.53 -90.28 -0.14 0.86 16 12 C 0.18 4.03 6.81 -3.27 -0.02 4.01 16 13 C -0.15 -1.97 6.12 -25.45 -0.16 -2.13 16 14 C 0.11 1.39 3.53 -65.65 -0.23 1.16 16 15 H 0.10 1.28 7.55 -51.93 -0.39 0.89 16 16 N -0.71 -8.07 5.15 -51.60 -0.27 -8.33 16 17 C 0.51 5.82 7.56 -10.98 -0.08 5.73 16 18 O -0.54 -7.83 13.64 5.56 0.08 -7.75 16 19 C -0.14 -1.12 5.18 -27.88 -0.14 -1.27 16 20 C -0.11 -0.95 2.03 -90.49 -0.18 -1.14 16 21 H 0.09 0.97 7.95 -51.93 -0.41 0.56 16 22 C -0.12 -0.84 5.31 -26.55 -0.14 -0.98 16 23 C -0.16 -1.08 6.14 -26.59 -0.16 -1.24 16 24 C 0.06 0.45 6.84 37.21 0.25 0.70 16 25 O -0.38 -4.29 10.77 -35.23 -0.38 -4.67 16 26 C 0.06 0.63 5.84 37.20 0.22 0.85 16 27 C 0.03 0.51 7.42 38.38 0.28 0.80 16 28 O -0.33 -6.44 11.29 -35.23 -0.40 -6.84 16 29 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.04 0.78 8.06 -51.93 -0.42 0.36 16 32 H 0.04 0.90 8.10 -51.93 -0.42 0.48 16 33 H 0.08 1.96 7.38 -51.93 -0.38 1.57 16 34 H 0.08 1.06 7.81 -51.93 -0.41 0.65 16 35 H 0.09 1.05 7.88 -51.93 -0.41 0.64 16 36 H 0.41 4.17 8.63 -40.82 -0.35 3.82 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.11 1.37 6.04 -51.92 -0.31 1.06 16 47 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 48 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 379.04 15.07 5.71 5.71 Total: -1.00 -34.19 379.04 -9.23 -43.43 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -8.13 Total: 1.50 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -0.79 Total: 2.71 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: -0.30 Total: -51.39 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.70 Total: -19.26 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.19 -9.23 -43.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054011500.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.714 kcal (2) G-P(sol) polarization free energy of solvation -34.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds