Wall clock time and date at job start Tue Mar 31 2020 13:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00263 * 2 1 4 4 H 1.48498 * 109.46902 * 274.98925 * 3 2 1 5 5 H 1.48497 * 109.46963 * 34.99103 * 3 2 1 6 6 H 1.48505 * 109.46938 * 154.99040 * 3 2 1 7 7 C 1.38819 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99639 * 185.08412 * 7 2 1 9 9 N 1.36938 * 119.99641 * 5.07872 * 7 2 1 10 10 C 1.47718 * 134.42746 * 173.50773 * 9 7 2 11 11 C 1.53238 * 85.89140 * 155.91794 * 10 9 7 12 12 C 1.47718 * 134.43577 * 353.55354 * 9 7 2 13 13 C 1.53440 * 114.98898 * 139.52100 * 11 10 9 14 14 C 1.54996 * 103.97333 * 128.78189 * 13 11 10 15 15 H 1.09001 * 110.86718 * 221.05136 * 14 13 11 16 16 N 1.46498 * 110.87327 * 97.36367 * 14 13 11 17 17 C 1.34777 * 119.99620 * 154.99687 * 16 14 13 18 18 O 1.21279 * 120.00476 * 0.02562 * 17 16 14 19 19 C 1.50704 * 119.99927 * 180.02562 * 17 16 14 20 20 C 1.52994 * 109.47527 * 180.02562 * 19 17 16 21 21 H 1.09002 * 109.52358 * 54.87428 * 20 19 17 22 22 C 1.53174 * 109.52733 * 175.00238 * 20 19 17 23 23 C 1.53178 * 109.03994 * 176.88853 * 22 20 19 24 24 C 1.53095 * 109.15963 * 303.01752 * 23 22 20 25 25 O 1.42901 * 109.41682 * 57.60719 * 24 23 22 26 26 C 1.42907 * 114.09838 * 298.84604 * 25 24 23 27 27 C 1.55308 * 102.01045 * 339.28879 * 14 13 11 28 28 O 1.42970 * 115.33250 * 266.48493 * 11 10 9 29 29 H 0.97002 * 119.99834 * 359.97438 * 1 2 3 30 30 H 1.08998 * 113.80859 * 41.67664 * 10 9 7 31 31 H 1.09001 * 113.91236 * 270.17453 * 10 9 7 32 32 H 1.09001 * 113.80349 * 89.84111 * 12 9 7 33 33 H 1.08996 * 113.80718 * 318.33090 * 12 9 7 34 34 H 1.08996 * 110.54738 * 247.43832 * 13 11 10 35 35 H 1.09000 * 110.55151 * 10.11572 * 13 11 10 36 36 H 0.96989 * 120.00192 * 335.00139 * 16 14 13 37 37 H 1.09004 * 109.47020 * 300.00210 * 19 17 16 38 38 H 1.09000 * 109.46985 * 60.00135 * 19 17 16 39 39 H 1.09006 * 109.54035 * 296.75677 * 22 20 19 40 40 H 1.08997 * 109.53955 * 56.92412 * 22 20 19 41 41 H 1.08994 * 109.52512 * 62.92303 * 23 22 20 42 42 H 1.09001 * 109.52297 * 183.05063 * 23 22 20 43 43 H 1.08993 * 109.47928 * 177.59204 * 24 23 22 44 44 H 1.09005 * 109.48168 * 297.61579 * 24 23 22 45 45 H 1.08997 * 109.47378 * 301.17037 * 26 25 24 46 46 H 1.09007 * 109.47851 * 181.14126 * 26 25 24 47 47 H 1.09002 * 110.48294 * 277.91421 * 27 14 13 48 48 H 1.08996 * 110.75485 * 155.10733 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5045 2.6199 0.8029 6 1 3.5966 1.4119 0.5919 7 6 2.0102 -1.2022 -0.0005 8 1 3.0870 -1.2041 0.0823 9 7 1.3295 -2.3857 -0.1061 10 6 1.7304 -3.7992 -0.2584 11 6 0.3714 -4.1371 0.3638 12 6 -0.0996 -2.7596 -0.1139 13 6 -0.3552 -5.3286 -0.2739 14 6 -0.7200 -6.2329 0.9308 15 1 -0.5580 -7.2837 0.6906 16 7 -2.1018 -6.0006 1.3584 17 6 -2.7783 -6.9692 2.0070 18 8 -2.2430 -8.0328 2.2372 19 6 -4.2000 -6.7305 2.4463 20 6 -4.7314 -7.9783 3.1544 21 1 -4.0618 -8.2463 3.9717 22 6 -6.1301 -7.6947 3.7107 23 6 -6.6828 -8.9730 4.3485 24 6 -6.6887 -10.0932 3.3050 25 8 -5.3633 -10.2848 2.8062 26 6 -4.8126 -9.1369 2.1571 27 6 0.2826 -5.7487 2.0136 28 8 0.3772 -4.3250 1.7810 29 1 -0.4850 0.8401 0.0004 30 1 2.5809 -4.0846 0.3608 31 1 1.8318 -4.1205 -1.2950 32 1 -0.5467 -2.7679 -1.1080 33 1 -0.6993 -2.2210 0.6197 34 1 -1.2562 -4.9960 -0.7893 35 1 0.3054 -5.8559 -0.9621 36 1 -2.5298 -5.1499 1.1746 37 1 -4.2312 -5.8833 3.1315 38 1 -4.8184 -6.5158 1.5748 39 1 -6.0708 -6.9081 4.4629 40 1 -6.7867 -7.3761 2.9011 41 1 -6.0530 -9.2621 5.1897 42 1 -7.6995 -8.7951 4.6989 43 1 -7.0410 -11.0165 3.7648 44 1 -7.3507 -9.8209 2.4829 45 1 -5.4499 -8.8520 1.3200 46 1 -3.8133 -9.3714 1.7900 47 1 1.2531 -6.2250 1.8751 48 1 -0.1023 -5.9490 3.0135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054011500.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:22 Heat of formation + Delta-G solvation = -101.911514 kcal Electronic energy + Delta-G solvation = -28070.346176 eV Core-core repulsion = 24125.813800 eV Total energy + Delta-G solvation = -3944.532376 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.66734 -40.83871 -39.72404 -37.75302 -35.48859 -35.27887 -34.13086 -33.01295 -31.81245 -29.96269 -28.33686 -27.32579 -26.66604 -25.91699 -24.22673 -23.63560 -22.23814 -21.39963 -20.91667 -20.55469 -18.75269 -18.07770 -17.69949 -17.28894 -17.06001 -17.00908 -16.48724 -16.23629 -15.99480 -15.91592 -15.34986 -15.24792 -15.20033 -14.95324 -14.65512 -14.26621 -13.80154 -13.55702 -13.52547 -13.44788 -13.15523 -13.04338 -12.81770 -12.72964 -12.56453 -12.48528 -12.29272 -12.10024 -11.93794 -11.91188 -11.72933 -11.62554 -11.32647 -11.22237 -10.91668 -10.71297 -10.55576 -10.35508 -9.90932 -8.90229 -7.92108 -5.22875 1.44271 1.46128 1.54980 1.64823 2.19765 2.46935 2.88577 3.01864 3.26708 3.40235 3.54841 3.67317 3.72443 3.79567 3.82867 3.86607 4.04782 4.06458 4.12367 4.29702 4.39060 4.40325 4.58545 4.61092 4.66066 4.69980 4.73567 4.75471 4.75794 4.77851 4.89574 4.93409 4.95446 5.00434 5.05511 5.11491 5.13493 5.20655 5.23047 5.29906 5.43554 5.51830 5.53659 5.93363 6.23383 6.32484 6.57616 6.92576 7.26684 7.60139 8.56202 9.25841 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.026907 B = 0.002290 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.370220 B =12222.419362 C =12846.262473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.067 4.067 3 Si 0.977 3.023 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.271 1.271 7 C -0.235 4.235 8 H 0.078 0.922 9 N -0.641 5.641 10 C 0.101 3.899 11 C 0.077 3.923 12 C 0.173 3.827 13 C -0.133 4.133 14 C 0.121 3.879 15 H 0.114 0.886 16 N -0.711 5.711 17 C 0.511 3.489 18 O -0.575 6.575 19 C -0.131 4.131 20 C -0.102 4.102 21 H 0.061 0.939 22 C -0.117 4.117 23 C -0.154 4.154 24 C 0.050 3.950 25 O -0.410 6.410 26 C 0.062 3.938 27 C 0.032 3.968 28 O -0.368 6.368 29 H 0.249 0.751 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.043 0.957 33 H 0.037 0.963 34 H 0.099 0.901 35 H 0.113 0.887 36 H 0.412 0.588 37 H 0.115 0.885 38 H 0.121 0.879 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.094 0.906 43 H 0.100 0.900 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.086 0.914 47 H 0.077 0.923 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.972 -18.553 3.591 24.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.805 3.195 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.196 1.196 7 C -0.363 4.363 8 H 0.096 0.904 9 N -0.368 5.368 10 C -0.024 4.024 11 C 0.036 3.964 12 C 0.048 3.952 13 C -0.172 4.172 14 C 0.015 3.985 15 H 0.132 0.868 16 N -0.362 5.362 17 C 0.299 3.701 18 O -0.455 6.455 19 C -0.171 4.171 20 C -0.121 4.121 21 H 0.080 0.920 22 C -0.154 4.154 23 C -0.192 4.192 24 C -0.027 4.027 25 O -0.329 6.329 26 C -0.014 4.014 27 C -0.046 4.046 28 O -0.287 6.287 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.118 0.882 35 H 0.131 0.869 36 H 0.248 0.752 37 H 0.133 0.867 38 H 0.140 0.860 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.112 0.888 43 H 0.118 0.882 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.105 0.895 47 H 0.096 0.904 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.419 -18.977 3.959 24.160 hybrid contribution 0.475 1.754 -0.134 1.823 sum -13.944 -17.222 3.825 22.487 Atomic orbital electron populations 1.69993 1.06303 1.25611 1.58015 1.25627 0.96671 1.00753 1.02966 0.85079 0.77773 0.79238 0.77381 1.21138 1.21992 1.19553 1.19358 0.91101 0.83584 1.42254 0.90387 1.46190 1.03693 1.01825 1.85068 1.23264 0.96558 0.84129 0.98425 1.23423 0.95803 0.95535 0.81604 1.22232 0.87157 0.88919 0.96923 1.23068 1.02330 0.94286 0.97510 1.22420 0.81755 1.00974 0.93319 0.86799 1.46022 1.13504 1.18177 1.58530 1.21243 0.89365 0.83050 0.76401 1.90673 1.71316 1.26833 1.56696 1.21745 0.91375 1.00240 1.03710 1.21465 0.97770 0.94329 0.98564 0.92040 1.21677 0.94505 0.97967 1.01255 1.22179 1.02796 0.95499 0.98728 1.22800 0.83423 0.99898 0.96548 1.87933 1.31611 1.37040 1.76336 1.22802 0.99131 0.85677 0.93792 1.24189 0.99179 0.81285 0.99943 1.88887 1.94303 1.23862 1.21630 0.94198 0.93576 0.91419 0.93891 0.94497 0.88213 0.86852 0.75165 0.86701 0.86050 0.90342 0.90075 0.92204 0.88779 0.88202 0.92094 0.92320 0.89544 0.90445 0.89525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.67 11.51 21.65 0.25 -57.42 16 2 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 3 Si 0.98 46.51 29.56 68.60 2.03 48.54 16 4 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.23 -13.59 10.69 84.04 0.90 -12.70 16 8 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 9 N -0.64 -33.63 3.70 -733.81 -2.72 -36.35 16 10 C 0.10 4.05 8.34 86.22 0.72 4.77 16 11 C 0.08 2.77 1.53 -10.45 -0.02 2.75 16 12 C 0.17 8.03 6.81 86.21 0.59 8.62 16 13 C -0.13 -3.21 6.12 31.42 0.19 -3.01 16 14 C 0.12 2.80 3.53 46.47 0.16 2.97 16 15 H 0.11 2.52 7.55 -2.39 -0.02 2.50 16 16 N -0.71 -14.80 5.15 -435.57 -2.24 -17.04 16 17 C 0.51 10.91 7.56 87.66 0.66 11.57 16 18 O -0.58 -16.35 13.64 -3.03 -0.04 -16.39 16 19 C -0.13 -1.87 5.18 29.85 0.15 -1.71 16 20 C -0.10 -1.72 2.03 -10.71 -0.02 -1.74 16 21 H 0.06 1.36 7.95 -2.39 -0.02 1.34 16 22 C -0.12 -1.38 5.31 30.71 0.16 -1.21 16 23 C -0.15 -1.86 6.14 30.69 0.19 -1.67 16 24 C 0.05 0.70 6.84 72.01 0.49 1.20 16 25 O -0.41 -9.09 10.77 -148.98 -1.60 -10.70 16 26 C 0.06 1.23 5.84 72.01 0.42 1.65 16 27 C 0.03 0.89 7.42 72.77 0.54 1.43 16 28 O -0.37 -14.08 11.29 -148.98 -1.68 -15.77 16 29 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.07 2.38 8.06 -2.39 -0.02 2.36 16 32 H 0.04 1.94 8.10 -2.39 -0.02 1.93 16 33 H 0.04 1.97 7.38 -2.39 -0.02 1.96 16 34 H 0.10 2.18 7.81 -2.39 -0.02 2.16 16 35 H 0.11 2.24 7.88 -2.39 -0.02 2.22 16 36 H 0.41 7.68 8.63 -92.72 -0.80 6.88 16 37 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 45 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.09 2.14 6.04 -2.38 -0.01 2.13 16 47 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -76.60 379.04 -0.25 -76.84 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.15 Total: 18.80 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 5.61 Total: 9.49 kcal Atomic # 7 Polarization: -106.10 SS G_CDS: -4.71 Total: -110.81 kcal Atomic # 8 Polarization: -39.53 SS G_CDS: -3.33 Total: -42.85 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -76.60 -0.25 -76.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054011500.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.069 kcal (2) G-P(sol) polarization free energy of solvation -76.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds