Wall clock time and date at job start Tue Mar 31 2020 14:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30376 * 125.96684 * 2 1 4 4 N 1.39917 * 109.02351 * 180.02562 * 3 2 1 5 5 C 1.46503 * 125.74244 * 180.02562 * 4 3 2 6 6 C 1.34422 * 108.51379 * 359.75859 * 4 3 2 7 7 F 1.35092 * 126.34437 * 180.25428 * 6 4 3 8 8 C 1.38505 * 107.30866 * 0.37713 * 6 4 3 9 9 C 1.47165 * 126.45657 * 179.89005 * 8 6 4 10 10 O 1.21631 * 120.00423 * 269.68935 * 9 8 6 11 11 N 1.34782 * 119.99755 * 89.68657 * 9 8 6 12 12 C 1.46496 * 119.99855 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.52319 * 325.07972 * 12 11 9 14 14 C 1.53039 * 109.49640 * 205.00023 * 12 11 9 15 15 C 1.53041 * 109.52551 * 178.67631 * 14 12 11 16 16 C 1.53189 * 109.31510 * 61.37244 * 15 14 12 17 17 H 1.08994 * 109.58884 * 65.15155 * 16 15 14 18 18 C 1.52999 * 109.58771 * 185.57951 * 16 15 14 19 19 N 1.46927 * 108.77577 * 305.36431 * 16 15 14 20 20 C 1.36936 * 120.63337 * 233.58716 * 19 16 15 21 21 H 1.08005 * 120.00100 * 41.20927 * 20 19 16 22 22 C 1.38809 * 120.00221 * 221.21401 * 20 19 16 23 23 N 1.31619 * 120.00188 * 214.87381 * 22 20 19 24 24 Si 1.86804 * 119.99836 * 34.86571 * 22 20 19 25 25 H 1.48497 * 109.46847 * 84.63186 * 24 22 20 26 26 H 1.48501 * 109.46931 * 204.62765 * 24 22 20 27 27 H 1.48491 * 109.47368 * 324.62976 * 24 22 20 28 28 C 1.46925 * 118.73816 * 53.60474 * 19 16 15 29 29 H 1.09000 * 109.47247 * 269.97500 * 1 2 3 30 30 H 1.09004 * 109.47347 * 29.97635 * 1 2 3 31 31 H 1.09003 * 109.47093 * 149.97113 * 1 2 3 32 32 H 1.08997 * 109.47464 * 89.97019 * 5 4 3 33 33 H 1.09004 * 109.46606 * 209.96891 * 5 4 3 34 34 H 1.09001 * 109.46690 * 329.96580 * 5 4 3 35 35 H 0.96998 * 120.00274 * 359.97438 * 11 9 8 36 36 H 1.09005 * 109.45848 * 58.66430 * 14 12 11 37 37 H 1.08994 * 109.46183 * 298.68491 * 14 12 11 38 38 H 1.08999 * 109.49894 * 181.32528 * 15 14 12 39 39 H 1.09001 * 109.49712 * 301.41693 * 15 14 12 40 40 H 1.09001 * 109.47571 * 59.99514 * 18 16 15 41 41 H 1.09000 * 109.46952 * 180.02562 * 18 16 15 42 42 H 1.09007 * 109.47095 * 299.99362 * 18 16 15 43 43 H 0.96996 * 120.00360 * 179.97438 * 23 22 20 44 44 H 1.09003 * 109.58798 * 66.17833 * 28 19 16 45 45 H 1.08998 * 109.58674 * 186.46344 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6111 0.6475 -0.0006 5 6 4.7763 1.5355 -0.0002 6 6 3.6479 -0.6963 0.0044 7 9 4.7576 -1.4667 0.0104 8 6 2.3374 -1.1444 -0.0005 9 6 1.8930 -2.5474 0.0000 10 8 1.7085 -3.1274 -1.0531 11 7 1.6905 -3.1896 1.1675 12 6 1.2487 -4.5864 1.1681 13 1 0.5775 -4.7565 0.3262 14 6 0.5141 -4.8892 2.4761 15 6 0.0235 -6.3388 2.4635 16 6 1.2272 -7.2802 2.3558 17 1 1.8404 -7.1933 3.2526 18 6 0.7386 -8.7220 2.2027 19 7 2.0201 -6.9013 1.1783 20 6 2.3373 -7.8293 0.2226 21 1 1.5998 -8.5518 -0.0944 22 6 3.6068 -7.8415 -0.3386 23 7 3.7635 -8.1645 -1.6049 24 14 5.0929 -7.3992 0.7032 25 1 5.5547 -8.6015 1.4424 26 1 6.1850 -6.9085 -0.1753 27 1 4.7205 -6.3361 1.6708 28 6 2.4664 -5.5077 1.0459 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3633 -0.8897 -0.5143 32 1 5.0652 1.7555 1.0275 33 1 5.6048 1.0480 -0.5142 34 1 4.5257 2.4637 -0.5139 35 1 1.8380 -2.7273 2.0074 36 1 -0.3388 -4.2180 2.5774 37 1 1.1931 -4.7431 3.3161 38 1 -0.5199 -6.5470 3.3851 39 1 -0.6360 -6.4922 1.6093 40 1 0.1311 -8.8061 1.3016 41 1 1.5965 -9.3901 2.1267 42 1 0.1402 -8.9970 3.0714 43 1 4.6505 -8.1726 -1.9972 44 1 3.1808 -5.2762 1.8360 45 1 2.9383 -5.3661 0.0736 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072034065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:03 Heat of formation + Delta-G solvation = -2.904184 kcal Electronic energy + Delta-G solvation = -28613.218467 eV Core-core repulsion = 24581.811817 eV Total energy + Delta-G solvation = -4031.406650 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 324.170 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.52749 -42.53124 -40.77820 -39.23255 -36.04432 -35.25158 -34.62112 -32.57370 -32.47223 -31.27302 -30.41970 -27.94483 -27.18193 -26.37901 -24.34727 -23.64561 -22.21192 -21.83782 -21.42250 -20.88345 -19.13456 -18.46106 -18.10112 -17.94271 -17.36468 -17.19899 -16.65253 -16.34158 -15.79450 -15.69528 -15.50132 -15.20337 -14.97533 -14.75680 -14.58618 -14.47895 -14.43092 -14.14768 -13.78228 -13.67968 -13.37547 -13.29693 -13.03498 -12.94988 -12.74715 -12.60127 -12.47077 -12.12597 -12.06446 -11.80984 -11.65832 -11.47858 -11.22987 -11.06179 -10.54675 -10.45006 -10.14573 -9.92891 -8.60735 -8.27160 -5.52038 0.15404 0.82332 1.09418 1.31855 1.36374 1.40432 1.45170 2.17377 2.45761 2.71340 2.94302 3.24628 3.48014 3.70480 3.83439 3.94977 4.08916 4.12798 4.19431 4.20771 4.27483 4.35271 4.49783 4.55061 4.69037 4.73731 4.74816 4.75362 4.86334 4.90119 5.00824 5.05398 5.08753 5.17030 5.23241 5.30362 5.31652 5.46730 5.56531 5.57528 5.70008 5.93818 6.20004 6.27281 6.51694 7.02051 7.20782 7.67635 8.16581 8.92982 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.014221 B = 0.004243 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.405918 B = 6598.251539 C = 7787.007684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.135 3.865 3 N -0.276 5.276 4 N -0.366 5.366 5 C 0.080 3.920 6 C 0.284 3.716 7 F -0.094 7.094 8 C -0.308 4.308 9 C 0.594 3.406 10 O -0.575 6.575 11 N -0.695 5.695 12 C 0.135 3.865 13 H 0.058 0.942 14 C -0.106 4.106 15 C -0.119 4.119 16 C 0.151 3.849 17 H 0.041 0.959 18 C -0.129 4.129 19 N -0.604 5.604 20 C -0.257 4.257 21 H 0.047 0.953 22 C -0.004 4.004 23 N -0.928 5.928 24 Si 0.899 3.101 25 H -0.283 1.283 26 H -0.308 1.308 27 H -0.245 1.245 28 C 0.142 3.858 29 H 0.112 0.888 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.118 0.882 35 H 0.415 0.585 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.049 0.951 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.082 0.918 43 H 0.260 0.740 44 H 0.030 0.970 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.611 21.678 12.501 25.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.031 4.031 3 N -0.099 5.099 4 N -0.150 5.150 5 C -0.058 4.058 6 C 0.135 3.865 7 F -0.074 7.074 8 C -0.325 4.325 9 C 0.379 3.621 10 O -0.454 6.454 11 N -0.347 5.347 12 C 0.029 3.971 13 H 0.077 0.923 14 C -0.144 4.144 15 C -0.158 4.158 16 C 0.047 3.953 17 H 0.059 0.941 18 C -0.186 4.186 19 N -0.330 5.330 20 C -0.387 4.387 21 H 0.065 0.935 22 C -0.203 4.203 23 N -0.570 5.570 24 Si 0.726 3.274 25 H -0.210 1.210 26 H -0.236 1.236 27 H -0.169 1.169 28 C 0.015 3.985 29 H 0.130 0.870 30 H 0.117 0.883 31 H 0.092 0.908 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.136 0.864 35 H 0.252 0.748 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.119 0.881 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.100 0.900 43 H 0.069 0.931 44 H 0.048 0.952 45 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -4.427 22.550 11.641 25.761 hybrid contribution 2.012 -1.255 -0.254 2.384 sum -2.416 21.296 11.387 24.269 Atomic orbital electron populations 1.20465 0.83086 1.04589 1.05480 1.22587 0.98438 0.86858 0.95252 1.77261 0.84483 1.21032 1.27155 1.49022 1.08102 1.02030 1.55875 1.22521 0.82475 0.94605 1.06197 1.17897 0.83060 0.82882 1.02666 1.91669 1.49912 1.71969 1.93804 1.19686 0.91411 0.94946 1.26436 1.17410 0.76288 0.84628 0.83762 1.90861 1.52466 1.68724 1.33308 1.45906 1.67704 1.12764 1.08281 1.21495 0.96285 0.79162 1.00205 0.92338 1.21665 1.00474 0.97667 0.94552 1.21948 0.97430 0.93799 1.02628 1.20964 0.91772 0.94362 0.88249 0.94127 1.21709 1.00193 0.95747 1.00955 1.44436 1.62587 1.03428 1.22528 1.18490 0.94298 1.12464 1.13436 0.93529 1.26126 1.00204 0.98080 0.95883 1.70197 1.23195 1.51813 1.11810 0.86441 0.81139 0.78987 0.80827 1.21001 1.23571 1.16901 1.21502 0.94774 0.84578 0.97609 0.87008 0.88259 0.90849 0.87621 0.87985 0.86353 0.74792 0.88861 0.90022 0.88076 0.93182 0.94450 0.94461 0.89974 0.93125 0.95223 0.96245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.29 10.28 71.23 0.73 -0.56 16 2 C 0.13 3.18 7.26 43.55 0.32 3.50 16 3 N -0.28 -6.27 12.49 -46.64 -0.58 -6.86 16 4 N -0.37 -7.81 3.98 -368.85 -1.47 -9.28 16 5 C 0.08 0.87 11.43 127.77 1.46 2.33 16 6 C 0.28 7.77 8.70 84.36 0.73 8.50 16 7 F -0.09 -2.78 17.31 44.97 0.78 -2.01 16 8 C -0.31 -9.06 5.89 -20.09 -0.12 -9.18 16 9 C 0.59 21.33 7.32 86.59 0.63 21.96 16 10 O -0.58 -27.38 16.77 -4.13 -0.07 -27.45 16 11 N -0.70 -20.99 5.08 -445.68 -2.26 -23.26 16 12 C 0.13 4.79 2.60 45.07 0.12 4.91 16 13 H 0.06 2.51 7.58 -2.38 -0.02 2.49 16 14 C -0.11 -2.67 5.35 30.62 0.16 -2.51 16 15 C -0.12 -3.33 5.37 30.67 0.16 -3.17 16 16 C 0.15 5.54 3.50 44.97 0.16 5.69 16 17 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 18 C -0.13 -4.61 8.07 71.98 0.58 -4.03 16 19 N -0.60 -28.97 2.47 -675.24 -1.67 -30.64 16 20 C -0.26 -14.95 8.43 84.03 0.71 -14.25 16 21 H 0.05 2.94 6.81 -2.91 -0.02 2.92 16 22 C 0.00 -0.26 4.82 84.86 0.41 0.15 16 23 N -0.93 -60.98 13.97 21.65 0.30 -60.68 16 24 Si 0.90 47.30 27.39 68.60 1.88 49.18 16 25 H -0.28 -14.52 7.11 99.48 0.71 -13.81 16 26 H -0.31 -16.63 7.11 99.48 0.71 -15.92 16 27 H -0.24 -11.99 5.24 99.48 0.52 -11.47 16 28 C 0.14 6.47 4.17 86.36 0.36 6.83 16 29 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.07 1.44 8.01 -2.39 -0.02 1.42 16 32 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.41 9.14 8.59 -92.71 -0.80 8.35 16 36 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.04 1.46 7.38 -2.39 -0.02 1.44 16 41 H 0.04 1.49 7.71 -2.39 -0.02 1.48 16 42 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 43 H 0.26 16.32 8.31 -92.71 -0.77 15.55 16 44 H 0.03 1.31 6.71 -2.39 -0.02 1.29 16 45 H 0.02 1.06 7.01 -2.39 -0.02 1.04 16 Total: -1.00 -83.65 369.78 3.36 -80.29 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.03 Total: 10.51 kcal Atomic # 6 Polarization: 13.77 SS G_CDS: 6.42 Total: 20.19 kcal Atomic # 7 Polarization: -125.02 SS G_CDS: -5.68 Total: -130.70 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.07 Total: -27.45 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.78 Total: -2.01 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 1.88 Total: 49.18 kcal Total: -83.65 3.36 -80.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072034065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.383 kcal (2) G-P(sol) polarization free energy of solvation -83.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds