Wall clock time and date at job start Tue Mar 31 2020 13:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99623 * 2 1 4 4 H 1.48501 * 109.46787 * 239.99923 * 3 2 1 5 5 H 1.48498 * 109.47054 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46996 * 119.99786 * 3 2 1 7 7 C 1.38808 * 120.00118 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99844 * 168.82006 * 7 2 1 9 9 N 1.36935 * 120.00084 * 348.81967 * 7 2 1 10 10 C 1.47353 * 121.30561 * 331.41100 * 9 7 2 11 11 C 1.53198 * 108.79459 * 230.26346 * 10 9 7 12 12 O 1.43146 * 109.74397 * 308.78376 * 11 10 9 13 13 C 1.42602 * 113.62918 * 61.69399 * 12 11 10 14 14 H 1.08999 * 108.96582 * 55.85071 * 13 12 11 15 15 C 1.52785 * 111.11137 * 176.39212 * 13 12 11 16 16 C 1.51976 * 109.55622 * 181.89567 * 15 13 12 17 17 N 1.46840 * 109.37402 * 306.68858 * 16 15 13 18 18 C 1.34774 * 120.41050 * 231.88574 * 17 16 15 19 19 O 1.21280 * 120.00012 * 174.97207 * 18 17 16 20 20 C 1.50697 * 119.99808 * 354.97657 * 18 17 16 21 21 C 1.53177 * 109.54449 * 208.60044 * 20 18 17 22 22 C 1.53089 * 109.16985 * 183.15116 * 21 20 18 23 23 O 1.42904 * 109.41310 * 57.60745 * 22 21 20 24 24 C 1.42904 * 114.09835 * 298.84533 * 23 22 21 25 25 C 1.53095 * 109.41408 * 61.15947 * 24 23 22 26 26 C 1.47135 * 119.17831 * 51.91645 * 17 16 15 27 27 C 1.46876 * 121.30256 * 151.43067 * 9 7 2 28 28 H 1.08990 * 109.65363 * 247.62621 * 27 9 7 29 29 H 0.96997 * 120.00533 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.58008 * 350.06103 * 10 9 7 31 31 H 1.09000 * 109.57736 * 110.46933 * 10 9 7 32 32 H 1.08999 * 109.42511 * 68.87264 * 11 10 9 33 33 H 1.09002 * 109.42125 * 188.75743 * 11 10 9 34 34 H 1.08997 * 109.57745 * 302.32904 * 15 13 12 35 35 H 1.09004 * 109.58111 * 62.72552 * 15 13 12 36 36 H 1.08994 * 109.72015 * 186.54548 * 16 15 13 37 37 H 1.09004 * 109.19892 * 66.51500 * 16 15 13 38 38 H 1.09003 * 109.54782 * 328.86303 * 20 18 17 39 39 H 1.09003 * 109.52392 * 303.05961 * 21 20 18 40 40 H 1.09005 * 109.52538 * 63.24617 * 21 20 18 41 41 H 1.09001 * 109.48059 * 297.63364 * 22 21 20 42 42 H 1.09003 * 109.48592 * 177.58981 * 22 21 20 43 43 H 1.08995 * 109.48333 * 301.17452 * 24 23 22 44 44 H 1.09003 * 109.49355 * 181.14094 * 24 23 22 45 45 H 1.09006 * 109.52221 * 182.48810 * 25 24 23 46 46 H 1.08998 * 109.57617 * 62.32505 * 25 24 23 47 47 H 1.08993 * 109.72608 * 187.10199 * 26 17 16 48 48 H 1.08995 * 109.72610 * 66.42429 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0749 -1.2110 -0.1808 9 7 1.3451 -2.3767 0.2310 10 6 0.1260 -2.4167 1.0578 11 6 0.2793 -3.5195 2.1100 12 8 0.6666 -4.7429 1.4755 13 6 1.9228 -4.6663 0.8050 14 1 2.6834 -4.3390 1.5139 15 6 2.3211 -6.0228 0.2258 16 6 3.6834 -5.9121 -0.4386 17 7 3.6646 -4.8091 -1.4077 18 6 4.0692 -5.0097 -2.6775 19 8 3.9653 -4.1196 -3.4948 20 6 4.6504 -6.3399 -3.0819 21 6 5.6369 -6.1385 -4.2363 22 6 6.1624 -7.5022 -4.6922 23 8 5.0633 -8.3300 -5.0779 24 6 4.1326 -8.5919 -4.0255 25 6 3.5255 -7.2719 -3.5429 26 6 3.1994 -3.4820 -0.9750 27 6 1.8191 -3.6460 -0.3359 28 1 1.1093 -4.0017 -1.0825 29 1 -0.4851 0.8400 -0.0004 30 1 -0.0111 -1.4555 1.5531 31 1 -0.7364 -2.6311 0.4267 32 1 1.0422 -3.2282 2.8320 33 1 -0.6706 -3.6640 2.6248 34 1 2.3602 -6.7636 1.0243 35 1 1.5908 -6.3287 -0.5234 36 1 3.9189 -6.8441 -0.9523 37 1 4.4385 -5.7152 0.3226 38 1 5.1678 -6.7853 -2.2321 39 1 5.1301 -5.6472 -5.0669 40 1 6.4699 -5.5210 -3.9002 41 1 6.7039 -7.9754 -3.8731 42 1 6.8322 -7.3683 -5.5417 43 1 4.6476 -9.0793 -3.1977 44 1 3.3400 -9.2429 -4.3944 45 1 2.8485 -7.4650 -2.7107 46 1 2.9754 -6.8030 -4.3587 47 1 3.1293 -2.8179 -1.8364 48 1 3.8956 -3.0677 -0.2459 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074140769.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:34 Heat of formation + Delta-G solvation = -98.597586 kcal Electronic energy + Delta-G solvation = -29706.499449 eV Core-core repulsion = 25762.110775 eV Total energy + Delta-G solvation = -3944.388673 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.65379 -39.29110 -38.28589 -36.13695 -34.75895 -33.87553 -31.76395 -31.44268 -31.31359 -29.92336 -27.36719 -26.23421 -24.69784 -23.97956 -23.76905 -22.16677 -21.55663 -20.62315 -19.72338 -18.75894 -17.36372 -16.88992 -16.42073 -16.25340 -15.62045 -15.40172 -15.24718 -15.12599 -14.89542 -14.53927 -14.25544 -14.04635 -13.66729 -13.63454 -13.13285 -13.05887 -12.90930 -12.70015 -12.66714 -12.38427 -11.95645 -11.70445 -11.48454 -11.33554 -11.02776 -10.97925 -10.93198 -10.86704 -10.68897 -10.56734 -10.28213 -10.24740 -10.03322 -10.00673 -9.64146 -9.37999 -9.00346 -8.56421 -8.39123 -6.73369 -5.84991 -3.33374 2.73228 3.08085 3.35423 3.40689 3.41437 3.63858 4.18875 4.38224 4.40965 4.49262 4.54035 4.74083 4.80135 4.95224 5.00137 5.11982 5.17271 5.26212 5.28536 5.34864 5.36447 5.41079 5.42388 5.48925 5.59756 5.65218 5.71081 5.76497 5.87334 5.89911 5.92809 6.07360 6.09665 6.12054 6.22065 6.31172 6.44306 6.61709 6.68279 6.85058 6.93713 7.12287 7.51192 7.57618 7.68420 7.86819 8.31505 8.34882 9.08882 9.71060 10.29120 11.22733 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.016160 B = 0.003817 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.270378 B = 7333.964856 C = 8601.149248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.008 3.992 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.259 4.259 8 H 0.070 0.930 9 N -0.588 5.588 10 C 0.143 3.857 11 C 0.039 3.961 12 O -0.390 6.390 13 C 0.078 3.922 14 H 0.052 0.948 15 C -0.125 4.125 16 C 0.110 3.890 17 N -0.611 5.611 18 C 0.518 3.482 19 O -0.534 6.534 20 C -0.109 4.109 21 C -0.140 4.140 22 C 0.063 3.937 23 O -0.383 6.383 24 C 0.065 3.935 25 C -0.147 4.147 26 C 0.123 3.877 27 C 0.138 3.862 28 H 0.036 0.964 29 H 0.256 0.744 30 H 0.098 0.902 31 H 0.027 0.973 32 H 0.040 0.960 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.050 0.950 42 H 0.096 0.904 43 H 0.052 0.948 44 H 0.097 0.903 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.102 0.898 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.405 -17.394 -1.184 19.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.735 3.265 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.388 4.388 8 H 0.088 0.912 9 N -0.312 5.312 10 C 0.017 3.983 11 C -0.039 4.039 12 O -0.309 6.309 13 C 0.018 3.982 14 H 0.070 0.930 15 C -0.164 4.164 16 C -0.013 4.013 17 N -0.345 5.345 18 C 0.305 3.695 19 O -0.410 6.410 20 C -0.130 4.130 21 C -0.178 4.178 22 C -0.014 4.014 23 O -0.302 6.302 24 C -0.012 4.012 25 C -0.185 4.185 26 C 0.002 3.998 27 C 0.030 3.970 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.116 0.884 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.068 0.932 42 H 0.115 0.885 43 H 0.070 0.930 44 H 0.115 0.885 45 H 0.099 0.901 46 H 0.100 0.900 47 H 0.120 0.880 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.100 -16.954 -1.811 19.327 hybrid contribution 0.389 1.352 0.512 1.497 sum 9.489 -15.603 -1.299 18.308 Atomic orbital electron populations 1.69959 1.05280 1.25795 1.53705 1.25120 0.95414 0.98418 1.00166 0.86324 0.78888 0.83079 0.78231 1.20651 1.21480 1.20910 1.19083 0.91134 0.83557 1.45007 0.91209 1.43996 1.29543 1.01987 1.55718 1.21474 0.88258 0.97379 0.91174 1.23358 0.98725 0.85931 0.95897 1.87733 1.37470 1.34791 1.70917 1.22395 0.86311 0.94800 0.94689 0.93048 1.21589 0.96672 0.97542 1.00562 1.21472 0.97534 0.90135 0.92128 1.48300 1.64486 1.11752 1.09936 1.20461 0.77988 0.89404 0.81631 1.90714 1.55174 1.45116 1.49983 1.21383 0.97735 0.94275 0.99605 1.22078 0.99037 0.98127 0.98558 1.22606 0.88594 0.89654 1.00545 1.87945 1.36177 1.69466 1.36565 1.22570 0.92430 0.95523 0.90706 1.22189 0.97472 0.96132 1.02725 1.21735 0.95016 0.82232 1.00863 1.21268 0.93937 0.88689 0.93114 0.94687 0.93381 0.88358 0.95464 0.94146 0.90068 0.90150 0.90971 0.89484 0.91354 0.89043 0.89500 0.90514 0.93159 0.88549 0.92979 0.88464 0.90133 0.89997 0.88003 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.88 10.99 55.49 0.61 -25.27 16 2 C 0.01 0.22 5.08 -17.43 -0.09 0.13 16 3 Si 0.91 21.57 29.57 -169.99 -5.03 16.54 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.26 -6.92 8.90 -15.06 -0.13 -7.05 16 8 H 0.07 1.81 6.34 -52.49 -0.33 1.48 16 9 N -0.59 -14.61 3.04 -164.35 -0.50 -15.11 16 10 C 0.14 3.40 5.40 -3.47 -0.02 3.38 16 11 C 0.04 0.76 6.95 37.26 0.26 1.02 16 12 O -0.39 -7.59 10.49 -35.23 -0.37 -7.96 16 13 C 0.08 1.39 2.51 -26.63 -0.07 1.32 16 14 H 0.05 0.93 8.13 -51.93 -0.42 0.51 16 15 C -0.12 -1.64 5.72 -27.36 -0.16 -1.80 16 16 C 0.11 1.25 6.07 -4.38 -0.03 1.23 16 17 N -0.61 -9.38 2.98 -173.54 -0.52 -9.90 16 18 C 0.52 8.09 6.76 -10.99 -0.07 8.01 16 19 O -0.53 -10.74 15.50 5.56 0.09 -10.65 16 20 C -0.11 -1.19 1.74 -91.59 -0.16 -1.35 16 21 C -0.14 -1.49 5.06 -26.59 -0.13 -1.63 16 22 C 0.06 0.54 6.84 37.20 0.25 0.80 16 23 O -0.38 -4.01 10.77 -35.23 -0.38 -4.38 16 24 C 0.06 0.54 6.84 37.21 0.25 0.79 16 25 C -0.15 -1.46 5.24 -26.59 -0.14 -1.60 16 26 C 0.12 2.40 4.53 -3.70 -0.02 2.38 16 27 C 0.14 2.92 3.00 -67.52 -0.20 2.72 16 28 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.10 2.55 6.17 -51.93 -0.32 2.23 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.09 0.72 4.94 -51.93 -0.26 0.47 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.78 6.53 -51.93 -0.34 0.44 16 39 H 0.09 1.13 7.76 -51.93 -0.40 0.72 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.08 0.71 7.46 -51.93 -0.39 0.33 16 46 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.10 2.32 6.82 -51.93 -0.35 1.97 16 48 H 0.07 1.38 7.41 -51.93 -0.38 0.99 16 LS Contribution 361.03 15.07 5.44 5.44 Total: -1.00 -32.47 361.03 -8.94 -41.41 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -7.83 Total: 1.53 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: -0.45 Total: 8.35 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: -0.41 Total: -50.27 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.66 Total: -23.00 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.47 -8.94 -41.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074140769.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.186 kcal (2) G-P(sol) polarization free energy of solvation -32.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds