Wall clock time and date at job start Tue Mar 31 2020 13:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 119.99737 * 2 1 4 4 H 1.48501 * 109.47415 * 273.76227 * 3 2 1 5 5 H 1.48498 * 109.47402 * 33.76532 * 3 2 1 6 6 H 1.48506 * 109.47073 * 153.76737 * 3 2 1 7 7 C 1.38809 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99896 * 196.65503 * 7 2 1 9 9 N 1.36936 * 120.00173 * 16.65116 * 7 2 1 10 10 C 1.49278 * 122.53614 * 24.75867 * 9 7 2 11 11 C 1.53224 * 109.26521 * 128.72310 * 10 9 7 12 12 O 1.43077 * 109.44878 * 51.64669 * 11 10 9 13 13 C 1.42690 * 113.87406 * 298.35251 * 12 11 10 14 14 H 1.08996 * 108.92666 * 304.40872 * 13 12 11 15 15 C 1.52507 * 110.10025 * 185.00993 * 13 12 11 16 16 C 1.53155 * 109.80244 * 299.05758 * 15 13 12 17 17 N 1.45037 * 108.25395 * 305.15488 * 16 15 13 18 18 C 1.34777 * 120.04108 * 235.02819 * 17 16 15 19 19 O 1.21286 * 119.99912 * 174.25273 * 18 17 16 20 20 C 1.50696 * 119.99771 * 354.26015 * 18 17 16 21 21 C 1.53178 * 109.54321 * 287.15256 * 20 18 17 22 22 C 1.53103 * 109.15677 * 183.24547 * 21 20 18 23 23 O 1.42898 * 109.48876 * 57.47395 * 22 21 20 24 24 C 1.42902 * 114.09797 * 298.88715 * 23 22 21 25 25 C 1.53095 * 109.41215 * 61.15860 * 24 23 22 26 26 C 1.46802 * 119.23528 * 54.77238 * 17 16 15 27 27 C 1.47593 * 121.22755 * 203.74976 * 9 7 2 28 28 H 1.09003 * 110.30952 * 353.28652 * 27 9 7 29 29 H 0.97004 * 120.00537 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.25889 * 8.82055 * 10 9 7 31 31 H 1.08997 * 109.37063 * 248.68949 * 10 9 7 32 32 H 1.09005 * 109.47473 * 291.66068 * 11 10 9 33 33 H 1.08991 * 109.48014 * 171.64680 * 11 10 9 34 34 H 1.09004 * 109.40947 * 59.15527 * 15 13 12 35 35 H 1.09003 * 109.41852 * 179.01631 * 15 13 12 36 36 H 1.08997 * 109.64035 * 65.14698 * 16 15 13 37 37 H 1.09000 * 109.64244 * 185.56998 * 16 15 13 38 38 H 1.08998 * 109.54451 * 47.33289 * 20 18 17 39 39 H 1.09000 * 109.52396 * 303.05892 * 21 20 18 40 40 H 1.09001 * 109.52042 * 63.24818 * 21 20 18 41 41 H 1.09000 * 109.40183 * 297.49126 * 22 21 20 42 42 H 1.09001 * 109.49282 * 177.51121 * 22 21 20 43 43 H 1.08992 * 109.48400 * 301.17852 * 24 23 22 44 44 H 1.09002 * 109.49303 * 181.14475 * 24 23 22 45 45 H 1.09007 * 109.52009 * 182.48248 * 25 24 23 46 46 H 1.09006 * 109.52016 * 62.30015 * 25 24 23 47 47 H 1.09007 * 109.52171 * 186.05374 * 26 17 16 48 48 H 1.08997 * 109.52210 * 65.93473 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4180 2.0925 -1.3970 5 1 1.4896 2.6284 0.7781 6 1 3.5852 1.4186 0.6189 7 6 2.0102 -1.2021 -0.0005 8 1 3.0563 -1.2218 0.2675 9 7 1.3687 -2.3630 -0.3409 10 6 0.1543 -2.3845 -1.2088 11 6 0.3648 -3.3874 -2.3480 12 8 0.7774 -4.6453 -1.8051 13 6 2.0151 -4.5907 -1.0972 14 1 2.7809 -4.1802 -1.7552 15 6 2.4335 -5.9919 -0.6643 16 6 1.3737 -6.5848 0.2689 17 7 1.1690 -5.6616 1.3686 18 6 1.3037 -6.0867 2.6405 19 8 1.2356 -5.2934 3.5554 20 6 1.5389 -7.5476 2.9257 21 6 0.2462 -8.3321 2.6810 22 6 0.4721 -9.8006 3.0506 23 8 0.8938 -9.8898 4.4130 24 6 2.1229 -9.2149 4.6888 25 6 1.9627 -7.7226 4.3872 26 6 0.8211 -4.2654 1.0774 27 6 1.8636 -3.6745 0.1212 28 1 2.8210 -3.5599 0.6295 29 1 -0.4851 0.8400 -0.0004 30 1 -0.0091 -1.3897 -1.6230 31 1 -0.7095 -2.6823 -0.6146 32 1 1.1341 -3.0135 -3.0238 33 1 -0.5686 -3.5165 -2.8957 34 1 2.5376 -6.6269 -1.5442 35 1 3.3879 -5.9395 -0.1403 36 1 0.4414 -6.7254 -0.2779 37 1 1.7203 -7.5435 0.6548 38 1 2.3241 -7.9251 2.2707 39 1 -0.5519 -7.9209 3.2991 40 1 -0.0312 -8.2582 1.6295 41 1 1.2411 -10.2226 2.4036 42 1 -0.4570 -10.3554 2.9206 43 1 2.9135 -9.6293 4.0633 44 1 2.3831 -9.3476 5.7389 45 1 2.9117 -7.2132 4.5548 46 1 1.2003 -7.2987 5.0408 47 1 0.8103 -3.6917 2.0042 48 1 -0.1639 -4.2249 0.6125 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074140771.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:42 Heat of formation + Delta-G solvation = -97.764881 kcal Electronic energy + Delta-G solvation = -29804.413548 eV Core-core repulsion = 25860.060983 eV Total energy + Delta-G solvation = -3944.352564 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.65453 -39.32339 -38.22548 -35.86132 -34.60853 -33.84220 -31.80122 -31.50356 -31.22645 -29.51345 -27.64834 -26.23179 -24.45060 -23.94771 -23.62768 -22.76084 -21.60175 -20.83923 -19.23345 -18.33502 -17.24683 -16.89023 -16.45542 -16.22653 -15.57720 -15.47835 -15.21204 -15.10389 -14.83464 -14.52970 -14.47389 -13.94497 -13.72201 -13.38431 -13.32034 -13.14418 -12.71054 -12.54753 -12.35665 -12.26812 -12.00384 -11.66034 -11.50040 -11.36003 -11.09220 -11.00316 -10.91045 -10.78326 -10.66474 -10.54123 -10.24145 -10.21653 -10.00046 -9.93470 -9.68235 -9.31091 -9.06336 -8.63677 -8.24228 -6.81208 -5.87863 -3.29469 2.82766 3.24958 3.33949 3.40874 3.42282 3.66780 4.27716 4.38701 4.46080 4.52241 4.59776 4.77007 4.83459 4.98616 5.08849 5.09213 5.21592 5.25977 5.28113 5.37101 5.41182 5.43503 5.45020 5.58421 5.62478 5.72131 5.72805 5.83689 5.94638 5.97532 6.01263 6.04119 6.11260 6.15158 6.26888 6.30413 6.38892 6.66620 6.72654 6.94347 6.96228 7.04337 7.42711 7.67157 7.74747 7.83965 8.23717 8.45365 9.03101 9.67022 10.26108 11.21013 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.019381 B = 0.003532 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.353970 B = 7926.341545 C = 8747.769865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.005 3.995 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.251 4.251 8 H 0.070 0.930 9 N -0.586 5.586 10 C 0.132 3.868 11 C 0.041 3.959 12 O -0.388 6.388 13 C 0.081 3.919 14 H 0.052 0.948 15 C -0.124 4.124 16 C 0.110 3.890 17 N -0.602 5.602 18 C 0.513 3.487 19 O -0.539 6.539 20 C -0.109 4.109 21 C -0.148 4.148 22 C 0.064 3.936 23 O -0.384 6.384 24 C 0.062 3.938 25 C -0.137 4.137 26 C 0.106 3.894 27 C 0.134 3.866 28 H 0.072 0.928 29 H 0.255 0.745 30 H 0.098 0.902 31 H 0.031 0.969 32 H 0.041 0.959 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.052 0.948 42 H 0.096 0.904 43 H 0.050 0.950 44 H 0.096 0.904 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.088 0.912 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.012 -19.299 0.082 19.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.194 4.194 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.088 0.912 9 N -0.309 5.309 10 C 0.007 3.993 11 C -0.037 4.037 12 O -0.307 6.307 13 C 0.021 3.979 14 H 0.070 0.930 15 C -0.163 4.163 16 C -0.014 4.014 17 N -0.334 5.334 18 C 0.300 3.700 19 O -0.416 6.416 20 C -0.130 4.130 21 C -0.186 4.186 22 C -0.013 4.013 23 O -0.302 6.302 24 C -0.015 4.015 25 C -0.175 4.175 26 C -0.017 4.017 27 C 0.025 3.975 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.116 0.884 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.070 0.930 42 H 0.115 0.885 43 H 0.068 0.932 44 H 0.114 0.886 45 H 0.097 0.903 46 H 0.102 0.898 47 H 0.107 0.893 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.648 -18.902 0.699 19.100 hybrid contribution 0.669 1.465 -0.397 1.658 sum 3.316 -17.438 0.301 17.753 Atomic orbital electron populations 1.70001 1.05226 1.25691 1.53618 1.25000 0.95363 0.98384 1.00689 0.86212 0.79154 0.83455 0.77577 1.21437 1.21644 1.20348 1.19174 0.92532 0.84140 1.42171 0.91182 1.44720 1.31301 1.00086 1.54761 1.21855 0.88539 0.98889 0.89996 1.23280 0.98621 0.84947 0.96819 1.87724 1.39199 1.31803 1.71962 1.22235 0.86632 0.94697 0.94290 0.93006 1.21835 0.98687 0.96273 0.99514 1.21361 0.99641 0.92147 0.88240 1.47804 1.68733 1.11805 1.05094 1.20500 0.76770 0.90053 0.82670 1.90701 1.50509 1.56304 1.44107 1.21365 0.99380 0.93367 0.98897 1.22214 0.97119 0.96071 1.03171 1.22567 1.00271 0.95151 0.83278 1.87936 1.40511 1.74508 1.27274 1.22624 0.86117 0.91140 1.01602 1.22042 1.03586 0.96808 0.95109 1.22330 0.99638 0.78758 1.00992 1.21546 0.96656 0.87169 0.92153 0.90990 0.93469 0.88443 0.95094 0.94077 0.89977 0.90477 0.90585 0.90742 0.90351 0.88871 0.90313 0.89971 0.93006 0.88547 0.93178 0.88589 0.90338 0.89817 0.89321 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.62 11.10 55.49 0.62 -25.00 16 2 C 0.00 0.12 5.04 -17.43 -0.09 0.04 16 3 Si 0.91 21.53 29.59 -169.99 -5.03 16.50 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.25 -6.77 9.74 -15.06 -0.15 -6.92 16 8 H 0.07 1.87 7.88 -52.49 -0.41 1.46 16 9 N -0.59 -14.25 2.80 -162.15 -0.45 -14.71 16 10 C 0.13 3.03 5.08 -2.38 -0.01 3.01 16 11 C 0.04 0.77 6.99 37.27 0.26 1.03 16 12 O -0.39 -6.97 9.54 -35.23 -0.34 -7.30 16 13 C 0.08 1.39 2.77 -26.88 -0.07 1.32 16 14 H 0.05 0.93 8.13 -51.93 -0.42 0.50 16 15 C -0.12 -1.59 5.80 -26.90 -0.16 -1.75 16 16 C 0.11 1.35 5.08 -4.75 -0.02 1.33 16 17 N -0.60 -9.61 2.91 -174.31 -0.51 -10.12 16 18 C 0.51 8.27 6.91 -10.99 -0.08 8.20 16 19 O -0.54 -11.10 15.35 5.55 0.09 -11.02 16 20 C -0.11 -1.24 1.74 -91.59 -0.16 -1.40 16 21 C -0.15 -1.46 5.17 -26.59 -0.14 -1.60 16 22 C 0.06 0.54 6.84 37.21 0.25 0.79 16 23 O -0.38 -4.08 10.77 -35.23 -0.38 -4.46 16 24 C 0.06 0.56 6.84 37.21 0.25 0.81 16 25 C -0.14 -1.54 4.86 -26.59 -0.13 -1.67 16 26 C 0.11 2.14 5.64 -3.72 -0.02 2.12 16 27 C 0.13 2.75 2.97 -67.08 -0.20 2.55 16 28 H 0.07 1.54 7.99 -51.93 -0.42 1.12 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.10 2.48 6.13 -51.93 -0.32 2.16 16 31 H 0.03 0.75 7.14 -51.93 -0.37 0.38 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.94 7.91 -51.93 -0.41 0.53 16 37 H 0.08 0.72 5.00 -51.93 -0.26 0.46 16 38 H 0.09 0.86 6.70 -51.93 -0.35 0.52 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.08 0.73 6.72 -51.93 -0.35 0.38 16 41 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.08 1.12 7.87 -51.93 -0.41 0.71 16 47 H 0.09 2.11 6.99 -51.93 -0.36 1.74 16 48 H 0.07 1.46 6.55 -51.93 -0.34 1.12 16 LS Contribution 359.59 15.07 5.42 5.42 Total: -1.00 -31.73 359.59 -8.82 -40.55 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -7.78 Total: 2.28 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: -0.45 Total: 7.86 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -0.34 Total: -49.83 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.63 Total: -22.78 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.73 -8.82 -40.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074140771.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.215 kcal (2) G-P(sol) polarization free energy of solvation -31.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds