Wall clock time and date at job start Tue Mar 31 2020 13:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48493 * 109.47155 * 270.00332 * 3 2 1 5 5 H 1.48502 * 109.47175 * 30.00635 * 3 2 1 6 6 H 1.48501 * 109.46757 * 150.00408 * 3 2 1 7 7 C 1.38813 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99824 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99631 * 359.97438 * 7 2 1 10 10 C 1.46650 * 125.28636 * 179.97438 * 9 7 2 11 11 C 1.53516 * 107.05364 * 197.38183 * 10 9 7 12 12 H 1.09003 * 112.80477 * 210.80108 * 11 10 9 13 13 C 1.54789 * 109.68314 * 84.09217 * 11 10 9 14 14 C 1.54945 * 101.45552 * 212.92662 * 13 11 10 15 15 N 1.47342 * 104.90031 * 37.25239 * 14 13 11 16 16 C 1.34777 * 125.52350 * 156.72314 * 15 14 13 17 17 O 1.21283 * 120.00635 * 179.97438 * 16 15 14 18 18 C 1.50704 * 119.99908 * 359.97438 * 16 15 14 19 19 O 1.42901 * 109.47158 * 180.02562 * 18 16 15 20 20 C 1.42901 * 113.99703 * 179.97438 * 19 18 16 21 21 C 1.53179 * 109.54636 * 269.82058 * 20 19 18 22 22 C 1.53100 * 109.15680 * 183.24632 * 21 20 19 23 23 O 1.42898 * 109.48959 * 57.47273 * 22 21 20 24 24 C 1.42898 * 114.10146 * 298.89049 * 23 22 21 25 25 C 1.53086 * 109.41420 * 61.15489 * 24 23 22 26 26 C 1.47257 * 108.95767 * 336.74302 * 15 14 13 27 27 H 1.08998 * 111.94343 * 236.63869 * 26 15 14 28 28 C 1.46495 * 125.29422 * 0.02562 * 9 7 2 29 29 H 0.97009 * 119.99785 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.91346 * 78.03274 * 10 9 7 31 31 H 1.09004 * 109.92179 * 316.73918 * 10 9 7 32 32 H 1.09003 * 111.02963 * 330.97070 * 13 11 10 33 33 H 1.09001 * 111.02500 * 94.87879 * 13 11 10 34 34 H 1.08995 * 110.35761 * 156.11122 * 14 13 11 35 35 H 1.09001 * 110.35257 * 278.29593 * 14 13 11 36 36 H 1.09002 * 109.47152 * 300.00091 * 18 16 15 37 37 H 1.09001 * 109.47188 * 60.00274 * 18 16 15 38 38 H 1.09000 * 109.54595 * 30.00453 * 20 19 18 39 39 H 1.09000 * 109.51706 * 303.06431 * 21 20 19 40 40 H 1.08999 * 109.52137 * 63.24911 * 21 20 19 41 41 H 1.09010 * 109.40492 * 297.49181 * 22 21 20 42 42 H 1.08995 * 109.48132 * 177.50845 * 22 21 20 43 43 H 1.09003 * 109.47662 * 301.17436 * 24 23 22 44 44 H 1.08997 * 109.48187 * 181.14359 * 24 23 22 45 45 H 1.09007 * 109.52194 * 182.48760 * 25 24 23 46 46 H 1.09001 * 109.52691 * 62.30181 * 25 24 23 47 47 H 1.09002 * 109.71427 * 58.30810 * 28 9 7 48 48 H 1.09002 * 109.66938 * 297.74243 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4478 2.6527 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 1.9385 -3.7202 -0.0016 11 6 0.8539 -4.7145 -0.4397 12 1 0.9806 -5.7013 0.0058 13 6 0.7798 -4.7578 -1.9852 14 6 -0.7294 -5.0240 -2.2136 15 7 -1.4140 -4.2471 -1.1654 16 6 -2.6889 -3.8132 -1.2189 17 8 -3.1531 -3.1793 -0.2950 18 6 -3.5377 -4.1156 -2.4269 19 8 -4.8393 -3.5537 -2.2473 20 6 -5.7279 -3.7841 -3.3424 21 6 -5.6057 -2.6380 -4.3514 22 6 -6.6184 -2.8517 -5.4795 23 8 -7.9348 -2.9326 -4.9295 24 6 -8.1200 -4.0158 -4.0161 25 6 -7.1694 -3.8477 -2.8280 26 6 -0.4795 -4.0212 -0.0500 27 1 -0.8745 -4.3954 0.8945 28 6 -0.1332 -2.5230 -0.0005 29 1 -0.4850 0.8401 0.0004 30 1 2.2875 -3.9691 1.0006 31 1 2.7712 -3.7454 -0.7046 32 1 1.0785 -3.8030 -2.4180 33 1 1.3853 -5.5721 -2.3831 34 1 -1.0306 -4.6756 -3.2015 35 1 -0.9478 -6.0863 -2.1041 36 1 -3.0748 -3.6829 -3.3138 37 1 -3.6216 -5.1953 -2.5509 38 1 -5.4721 -4.7260 -3.8277 39 1 -5.8118 -1.6907 -3.8531 40 1 -4.5969 -2.6217 -4.7638 41 1 -6.3860 -3.7786 -6.0041 42 1 -6.5667 -2.0161 -6.1775 43 1 -7.9073 -4.9578 -4.5215 44 1 -9.1502 -4.0188 -3.6598 45 1 -7.2777 -4.6959 -2.1519 46 1 -7.4080 -2.9256 -2.2980 47 1 -0.5491 -2.0202 -0.8737 48 1 -0.5426 -2.0811 0.9079 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076315276.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:54 Heat of formation + Delta-G solvation = -88.115534 kcal Electronic energy + Delta-G solvation = -28717.707867 eV Core-core repulsion = 24773.773730 eV Total energy + Delta-G solvation = -3943.934137 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.19747 -39.72093 -38.13660 -36.95196 -34.89158 -32.71681 -32.24562 -31.41385 -30.65401 -29.20771 -27.75917 -26.34931 -24.58596 -24.27378 -23.84065 -22.56159 -20.69108 -20.55499 -19.65866 -18.65301 -17.43614 -16.96024 -16.54415 -16.38176 -16.22799 -15.84419 -15.34956 -15.16819 -14.82835 -14.52570 -14.23281 -13.84280 -13.67324 -13.46971 -13.28663 -12.93901 -12.68135 -12.59973 -12.34182 -12.15546 -11.75720 -11.62314 -11.53605 -11.42248 -11.16701 -11.11554 -10.97229 -10.75853 -10.66205 -10.53269 -10.19912 -10.01988 -9.98485 -9.85358 -9.69038 -9.66839 -9.31241 -8.55394 -8.18712 -6.78113 -5.63632 -3.00905 2.85422 3.02437 3.42693 3.47276 3.50665 3.57030 3.83114 4.45763 4.49127 4.53152 4.65004 4.68758 4.80009 4.81754 4.89927 4.99754 5.06440 5.11749 5.13821 5.20717 5.28499 5.33899 5.38621 5.46481 5.52855 5.56566 5.58105 5.70653 5.73832 5.81399 5.91289 5.92488 5.99609 6.05091 6.18657 6.37833 6.57675 6.59997 6.62535 6.85417 6.87771 7.03624 7.61496 7.66316 7.93591 7.96400 8.33513 8.60565 9.26993 9.87944 10.50673 11.45464 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014320 B = 0.003159 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.862722 B = 8861.082871 C =10059.249393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.235 4.235 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.112 4.112 12 H 0.088 0.912 13 C -0.121 4.121 14 C 0.100 3.900 15 N -0.609 5.609 16 C 0.525 3.475 17 O -0.506 6.506 18 C 0.051 3.949 19 O -0.351 6.351 20 C 0.088 3.912 21 C -0.182 4.182 22 C 0.065 3.935 23 O -0.383 6.383 24 C 0.065 3.935 25 C -0.154 4.154 26 C 0.118 3.882 27 H 0.080 0.920 28 C 0.180 3.820 29 H 0.253 0.747 30 H 0.017 0.983 31 H 0.038 0.962 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.050 0.950 42 H 0.098 0.902 43 H 0.051 0.949 44 H 0.099 0.901 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.056 0.944 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.919 -15.008 -11.537 21.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.364 4.364 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.018 3.982 11 C -0.131 4.131 12 H 0.107 0.893 13 C -0.159 4.159 14 C -0.023 4.023 15 N -0.346 5.346 16 C 0.312 3.688 17 O -0.380 6.380 18 C -0.029 4.029 19 O -0.269 6.269 20 C 0.030 3.970 21 C -0.220 4.220 22 C -0.012 4.012 23 O -0.301 6.301 24 C -0.012 4.012 25 C -0.192 4.192 26 C 0.014 3.986 27 H 0.098 0.902 28 C 0.054 3.946 29 H 0.064 0.936 30 H 0.034 0.966 31 H 0.056 0.944 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.095 0.905 41 H 0.068 0.932 42 H 0.116 0.884 43 H 0.069 0.931 44 H 0.117 0.883 45 H 0.100 0.900 46 H 0.103 0.897 47 H 0.074 0.926 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.547 -14.152 -10.902 20.745 hybrid contribution 0.880 0.528 -0.206 1.047 sum -9.667 -13.624 -11.109 20.061 Atomic orbital electron populations 1.70012 1.04731 1.25111 1.56085 1.24862 0.95681 0.97722 1.02014 0.86147 0.78565 0.83697 0.77482 1.21666 1.21654 1.20696 1.18989 0.90331 0.82250 1.44790 0.90386 1.44141 1.01442 0.99969 1.87393 1.21066 0.93820 0.85764 0.97520 1.22971 0.95696 0.98825 0.95637 0.89347 1.22753 0.94018 1.03081 0.96014 1.22312 0.93547 0.95152 0.91296 1.48509 1.10793 1.54970 1.20282 1.19665 0.80829 0.80039 0.88288 1.90773 1.71276 1.37680 1.38234 1.22226 0.85126 0.98265 0.97260 1.88102 1.20828 1.77252 1.40671 1.22130 0.90344 0.96885 0.87630 1.22772 1.00460 1.01172 0.97618 1.22557 0.82109 1.01798 0.94709 1.87946 1.30310 1.50899 1.60965 1.22578 0.99858 0.89564 0.89153 1.22295 0.93092 1.04677 0.99101 1.22871 0.87148 0.99945 0.88590 0.90186 1.21249 0.84081 0.87193 1.02057 0.93628 0.96562 0.94355 0.89486 0.90494 0.91335 0.91809 0.90637 0.90851 0.92115 0.89622 0.90474 0.93172 0.88424 0.93106 0.88250 0.90045 0.89685 0.92588 0.93722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.17 10.23 55.49 0.57 -27.61 16 2 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 3 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.24 -6.63 10.25 -15.06 -0.15 -6.79 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.50 3.37 -172.28 -0.58 -16.08 16 10 C 0.14 2.90 6.50 -3.69 -0.02 2.87 16 11 C -0.11 -1.81 3.97 -88.21 -0.35 -2.16 16 12 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 13 C -0.12 -1.67 6.32 -24.76 -0.16 -1.83 16 14 C 0.10 1.26 6.66 -2.56 -0.02 1.25 16 15 N -0.61 -10.60 2.83 -161.82 -0.46 -11.06 16 16 C 0.53 9.93 7.64 -10.98 -0.08 9.84 16 17 O -0.51 -12.21 16.59 -14.36 -0.24 -12.45 16 18 C 0.05 0.71 5.24 36.01 0.19 0.90 16 19 O -0.35 -5.40 9.53 -55.14 -0.53 -5.93 16 20 C 0.09 0.97 2.69 -26.54 -0.07 0.90 16 21 C -0.18 -1.91 5.77 -26.59 -0.15 -2.07 16 22 C 0.07 0.57 6.84 37.21 0.25 0.82 16 23 O -0.38 -4.00 10.77 -35.23 -0.38 -4.38 16 24 C 0.07 0.54 6.84 37.20 0.25 0.79 16 25 C -0.15 -1.54 5.79 -26.59 -0.15 -1.69 16 26 C 0.12 2.32 3.81 -65.88 -0.25 2.07 16 27 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 28 C 0.18 4.62 4.62 -3.60 -0.02 4.60 16 29 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 30 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.04 0.73 7.95 -51.93 -0.41 0.32 16 32 H 0.09 1.47 7.93 -51.93 -0.41 1.06 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.74 7.49 -51.93 -0.39 0.35 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.92 7.68 -51.93 -0.40 0.52 16 37 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 38 H 0.06 0.53 7.79 -51.93 -0.40 0.13 16 39 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.08 0.75 7.97 -51.93 -0.41 0.34 16 41 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 42 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.06 1.63 6.88 -51.93 -0.36 1.27 16 48 H 0.04 1.34 7.51 -51.93 -0.39 0.95 16 LS Contribution 375.76 15.07 5.66 5.66 Total: -1.00 -36.28 375.76 -10.02 -46.30 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -8.22 Total: -1.29 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -0.83 Total: 9.26 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: -0.47 Total: -54.75 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -1.14 Total: -22.75 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.28 -10.02 -46.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076315276.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.815 kcal (2) G-P(sol) polarization free energy of solvation -36.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds