Wall clock time and date at job start Tue Mar 31 2020 13:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48493 * 109.47155 * 270.00332 * 3 2 1 5 5 H 1.48502 * 109.47175 * 30.00635 * 3 2 1 6 6 H 1.48501 * 109.46757 * 150.00408 * 3 2 1 7 7 C 1.38813 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99824 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99631 * 359.97438 * 7 2 1 10 10 C 1.46650 * 125.28636 * 179.97438 * 9 7 2 11 11 C 1.53516 * 107.05364 * 197.38183 * 10 9 7 12 12 H 1.09003 * 112.80477 * 210.80108 * 11 10 9 13 13 C 1.54789 * 109.68314 * 84.09217 * 11 10 9 14 14 C 1.54945 * 101.45552 * 212.92662 * 13 11 10 15 15 N 1.47342 * 104.90031 * 37.25239 * 14 13 11 16 16 C 1.34777 * 125.52350 * 156.72314 * 15 14 13 17 17 O 1.21283 * 120.00635 * 179.97438 * 16 15 14 18 18 C 1.50704 * 119.99908 * 359.97438 * 16 15 14 19 19 O 1.42901 * 109.47158 * 180.02562 * 18 16 15 20 20 C 1.42901 * 113.99703 * 179.97438 * 19 18 16 21 21 C 1.53179 * 109.54636 * 269.82058 * 20 19 18 22 22 C 1.53100 * 109.15680 * 183.24632 * 21 20 19 23 23 O 1.42898 * 109.48959 * 57.47273 * 22 21 20 24 24 C 1.42898 * 114.10146 * 298.89049 * 23 22 21 25 25 C 1.53086 * 109.41420 * 61.15489 * 24 23 22 26 26 C 1.47257 * 108.95767 * 336.74302 * 15 14 13 27 27 H 1.08998 * 111.94343 * 236.63869 * 26 15 14 28 28 C 1.46495 * 125.29422 * 0.02562 * 9 7 2 29 29 H 0.97009 * 119.99785 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.91346 * 78.03274 * 10 9 7 31 31 H 1.09004 * 109.92179 * 316.73918 * 10 9 7 32 32 H 1.09003 * 111.02963 * 330.97070 * 13 11 10 33 33 H 1.09001 * 111.02500 * 94.87879 * 13 11 10 34 34 H 1.08995 * 110.35761 * 156.11122 * 14 13 11 35 35 H 1.09001 * 110.35257 * 278.29593 * 14 13 11 36 36 H 1.09002 * 109.47152 * 300.00091 * 18 16 15 37 37 H 1.09001 * 109.47188 * 60.00274 * 18 16 15 38 38 H 1.09000 * 109.54595 * 30.00453 * 20 19 18 39 39 H 1.09000 * 109.51706 * 303.06431 * 21 20 19 40 40 H 1.08999 * 109.52137 * 63.24911 * 21 20 19 41 41 H 1.09010 * 109.40492 * 297.49181 * 22 21 20 42 42 H 1.08995 * 109.48132 * 177.50845 * 22 21 20 43 43 H 1.09003 * 109.47662 * 301.17436 * 24 23 22 44 44 H 1.08997 * 109.48187 * 181.14359 * 24 23 22 45 45 H 1.09007 * 109.52194 * 182.48760 * 25 24 23 46 46 H 1.09001 * 109.52691 * 62.30181 * 25 24 23 47 47 H 1.09002 * 109.71427 * 58.30810 * 28 9 7 48 48 H 1.09002 * 109.66938 * 297.74243 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4478 2.6527 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 1.9385 -3.7202 -0.0016 11 6 0.8539 -4.7145 -0.4397 12 1 0.9806 -5.7013 0.0058 13 6 0.7798 -4.7578 -1.9852 14 6 -0.7294 -5.0240 -2.2136 15 7 -1.4140 -4.2471 -1.1654 16 6 -2.6889 -3.8132 -1.2189 17 8 -3.1531 -3.1793 -0.2950 18 6 -3.5377 -4.1156 -2.4269 19 8 -4.8393 -3.5537 -2.2473 20 6 -5.7279 -3.7841 -3.3424 21 6 -5.6057 -2.6380 -4.3514 22 6 -6.6184 -2.8517 -5.4795 23 8 -7.9348 -2.9326 -4.9295 24 6 -8.1200 -4.0158 -4.0161 25 6 -7.1694 -3.8477 -2.8280 26 6 -0.4795 -4.0212 -0.0500 27 1 -0.8745 -4.3954 0.8945 28 6 -0.1332 -2.5230 -0.0005 29 1 -0.4850 0.8401 0.0004 30 1 2.2875 -3.9691 1.0006 31 1 2.7712 -3.7454 -0.7046 32 1 1.0785 -3.8030 -2.4180 33 1 1.3853 -5.5721 -2.3831 34 1 -1.0306 -4.6756 -3.2015 35 1 -0.9478 -6.0863 -2.1041 36 1 -3.0748 -3.6829 -3.3138 37 1 -3.6216 -5.1953 -2.5509 38 1 -5.4721 -4.7260 -3.8277 39 1 -5.8118 -1.6907 -3.8531 40 1 -4.5969 -2.6217 -4.7638 41 1 -6.3860 -3.7786 -6.0041 42 1 -6.5667 -2.0161 -6.1775 43 1 -7.9073 -4.9578 -4.5215 44 1 -9.1502 -4.0188 -3.6598 45 1 -7.2777 -4.6959 -2.1519 46 1 -7.4080 -2.9256 -2.2980 47 1 -0.5491 -2.0202 -0.8737 48 1 -0.5426 -2.0811 0.9079 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076315276.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:54 Heat of formation + Delta-G solvation = -114.212107 kcal Electronic energy + Delta-G solvation = -28718.839500 eV Core-core repulsion = 24773.773730 eV Total energy + Delta-G solvation = -3945.065770 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.56643 -40.60962 -39.46930 -38.11794 -36.62160 -34.15424 -33.53396 -32.25052 -32.12102 -30.81626 -29.19410 -27.86060 -26.40135 -25.19276 -24.58346 -23.80237 -22.39150 -21.47172 -21.05661 -20.11124 -18.95437 -18.43401 -17.87953 -17.26201 -17.19681 -16.94815 -16.81789 -16.30589 -16.19797 -15.72987 -15.55133 -15.23719 -15.09282 -14.61170 -14.44910 -14.31251 -14.04483 -13.70368 -13.67397 -13.33911 -13.27770 -13.18304 -12.93450 -12.71969 -12.60928 -12.44964 -12.26619 -12.17871 -11.91818 -11.88372 -11.81559 -11.50039 -11.44975 -11.38587 -10.86921 -10.73849 -10.67802 -10.56697 -9.64278 -8.92406 -7.85722 -5.25480 1.40259 1.43799 1.52921 1.56950 1.71708 2.46220 2.75950 2.97246 3.30367 3.35741 3.66283 3.68198 3.71447 3.76238 3.85215 3.94737 4.00501 4.05178 4.08129 4.23041 4.26076 4.33018 4.38047 4.40212 4.50260 4.51131 4.58420 4.66065 4.72993 4.74608 4.81556 4.87996 4.96317 5.03322 5.10841 5.11080 5.17381 5.19425 5.22006 5.43547 5.51532 5.56835 5.78010 6.11433 6.16676 6.23145 6.59011 7.04691 7.20916 7.76843 8.37670 9.21876 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.014320 B = 0.003159 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.862722 B = 8861.082871 C =10059.249393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.074 4.074 3 Si 0.981 3.019 4 H -0.282 1.282 5 H -0.301 1.301 6 H -0.262 1.262 7 C -0.241 4.241 8 H 0.091 0.909 9 N -0.623 5.623 10 C 0.135 3.865 11 C -0.092 4.092 12 H 0.137 0.863 13 C -0.115 4.115 14 C 0.096 3.904 15 N -0.609 5.609 16 C 0.510 3.490 17 O -0.580 6.580 18 C 0.061 3.939 19 O -0.393 6.393 20 C 0.082 3.918 21 C -0.182 4.182 22 C 0.067 3.933 23 O -0.406 6.406 24 C 0.067 3.933 25 C -0.154 4.154 26 C 0.118 3.882 27 H 0.071 0.929 28 C 0.202 3.798 29 H 0.241 0.759 30 H 0.021 0.979 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.127 0.873 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.122 0.878 38 H 0.097 0.903 39 H 0.050 0.950 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.104 0.896 43 H 0.078 0.922 44 H 0.111 0.889 45 H 0.090 0.910 46 H 0.053 0.947 47 H 0.010 0.990 48 H -0.023 1.023 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.579 -18.951 -14.320 25.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.266 4.266 3 Si 0.809 3.191 4 H -0.209 1.209 5 H -0.228 1.228 6 H -0.186 1.186 7 C -0.369 4.369 8 H 0.109 0.891 9 N -0.350 5.350 10 C 0.010 3.990 11 C -0.111 4.111 12 H 0.155 0.845 13 C -0.152 4.152 14 C -0.024 4.024 15 N -0.344 5.344 16 C 0.299 3.701 17 O -0.459 6.459 18 C -0.018 4.018 19 O -0.312 6.312 20 C 0.025 3.975 21 C -0.221 4.221 22 C -0.010 4.010 23 O -0.325 6.325 24 C -0.009 4.009 25 C -0.192 4.192 26 C 0.013 3.987 27 H 0.089 0.911 28 C 0.076 3.924 29 H 0.050 0.950 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.146 0.854 34 H 0.110 0.890 35 H 0.130 0.870 36 H 0.113 0.887 37 H 0.140 0.860 38 H 0.115 0.885 39 H 0.069 0.931 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.122 0.878 43 H 0.096 0.904 44 H 0.129 0.871 45 H 0.109 0.891 46 H 0.072 0.928 47 H 0.028 0.972 48 H -0.005 1.005 Dipole moment (debyes) X Y Z Total from point charges -9.142 -18.167 -13.733 24.540 hybrid contribution 0.519 1.744 0.712 1.954 sum -8.623 -16.423 -13.021 22.663 Atomic orbital electron populations 1.70337 1.06695 1.24894 1.58275 1.25812 0.96433 1.01641 1.02723 0.85038 0.77652 0.78789 0.77628 1.20895 1.22832 1.18621 1.19504 0.91159 0.83476 1.42808 0.89076 1.44455 1.01751 1.01794 1.86986 1.21377 0.95485 0.83884 0.98280 1.23033 0.90913 0.99226 0.97916 0.84541 1.22772 0.95798 1.03093 0.93576 1.22742 0.91920 0.97030 0.90752 1.48631 1.10273 1.54732 1.20723 1.20830 0.81534 0.78667 0.89079 1.90735 1.73002 1.40959 1.41215 1.22276 0.83956 1.00995 0.94530 1.88079 1.21872 1.78209 1.43005 1.22412 0.89847 0.98434 0.86781 1.22773 1.01615 0.99528 0.98139 1.22653 0.80836 1.03531 0.93934 1.87919 1.31135 1.52075 1.61372 1.22712 0.99965 0.90056 0.88193 1.22328 0.93357 1.03503 1.00046 1.22584 0.90100 0.95947 0.90059 0.91069 1.20745 0.84028 0.90985 0.96673 0.95004 0.96080 0.92657 0.93305 0.85447 0.88985 0.86999 0.88665 0.86045 0.88489 0.93143 0.89707 0.90355 0.87791 0.90394 0.87095 0.89114 0.92812 0.97200 1.00464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -63.28 10.23 21.65 0.22 -63.06 16 2 C -0.07 -4.45 5.48 84.86 0.47 -3.98 16 3 Si 0.98 48.15 29.55 68.60 2.03 50.18 16 4 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 5 H -0.30 -15.20 7.11 99.48 0.71 -14.49 16 6 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.24 -13.91 10.25 84.03 0.86 -13.05 16 8 H 0.09 4.90 7.83 -2.91 -0.02 4.88 16 9 N -0.62 -33.09 3.37 -698.97 -2.36 -35.45 16 10 C 0.13 5.20 6.50 86.52 0.56 5.76 16 11 C -0.09 -2.69 3.97 -9.23 -0.04 -2.72 16 12 H 0.14 2.83 8.14 -2.39 -0.02 2.81 16 13 C -0.11 -2.68 6.32 31.87 0.20 -2.48 16 14 C 0.10 1.98 6.66 86.88 0.58 2.56 16 15 N -0.61 -20.65 2.83 -784.28 -2.22 -22.87 16 16 C 0.51 19.62 7.64 87.66 0.67 20.29 16 17 O -0.58 -30.22 16.59 16.00 0.27 -29.96 16 18 C 0.06 1.59 5.24 71.24 0.37 1.96 16 19 O -0.39 -12.14 9.53 -129.94 -1.24 -13.38 16 20 C 0.08 1.70 2.69 30.72 0.08 1.78 16 21 C -0.18 -3.75 5.77 30.69 0.18 -3.57 16 22 C 0.07 1.04 6.84 72.02 0.49 1.54 16 23 O -0.41 -7.96 10.77 -148.98 -1.60 -9.56 16 24 C 0.07 0.98 6.84 72.01 0.49 1.47 16 25 C -0.15 -3.01 5.79 30.68 0.18 -2.83 16 26 C 0.12 4.71 3.81 45.91 0.17 4.88 16 27 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 28 C 0.20 11.12 4.62 86.67 0.40 11.52 16 29 H 0.24 15.81 8.31 -92.70 -0.77 15.04 16 30 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 1.97 7.95 -2.38 -0.02 1.95 16 32 H 0.05 1.54 7.93 -2.39 -0.02 1.52 16 33 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.09 1.52 7.49 -2.39 -0.02 1.50 16 35 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.10 2.06 7.68 -2.39 -0.02 2.04 16 37 H 0.12 1.94 8.09 -2.39 -0.02 1.93 16 38 H 0.10 1.30 7.79 -2.39 -0.02 1.28 16 39 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.08 1.56 7.97 -2.39 -0.02 1.54 16 41 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16 43 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.11 1.31 8.14 -2.39 -0.02 1.30 16 45 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 46 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.01 0.62 6.88 -2.39 -0.02 0.60 16 48 H -0.02 -1.53 7.51 -2.39 -0.02 -1.55 16 Total: -1.00 -92.21 375.76 1.70 -90.51 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.93 Total: 10.46 kcal Atomic # 6 Polarization: 17.45 SS G_CDS: 5.67 Total: 23.12 kcal Atomic # 7 Polarization: -117.02 SS G_CDS: -4.35 Total: -121.37 kcal Atomic # 8 Polarization: -50.32 SS G_CDS: -2.58 Total: -52.89 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 2.03 Total: 50.18 kcal Total: -92.21 1.70 -90.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076315276.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.700 kcal (2) G-P(sol) polarization free energy of solvation -92.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds