Wall clock time and date at job start Tue Mar 31 2020 13:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 120.00350 * 2 1 4 4 H 1.48497 * 109.47175 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46910 * 300.00025 * 3 2 1 6 6 H 1.48500 * 109.46772 * 60.00047 * 3 2 1 7 7 C 1.38818 * 119.99747 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99884 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00020 * 359.97438 * 7 2 1 10 10 C 1.46772 * 125.36102 * 0.02562 * 9 7 2 11 11 C 1.53913 * 107.62499 * 178.83233 * 10 9 7 12 12 H 1.09001 * 109.52243 * 100.77529 * 11 10 9 13 13 O 1.40853 * 110.30321 * 221.41219 * 11 10 9 14 14 C 1.41321 * 118.30708 * 68.00672 * 13 11 10 15 15 C 1.51963 * 111.61096 * 56.89886 * 14 13 11 16 16 N 1.44965 * 111.93220 * 319.69408 * 15 14 13 17 17 C 1.34776 * 117.33539 * 203.73095 * 16 15 14 18 18 O 1.21281 * 119.99936 * 177.45904 * 17 16 15 19 19 C 1.50702 * 120.00173 * 357.45378 * 17 16 15 20 20 C 1.52999 * 109.47119 * 180.02562 * 19 17 16 21 21 C 1.53004 * 109.46671 * 180.02562 * 20 19 17 22 22 H 1.08994 * 109.87366 * 306.00643 * 21 20 19 23 23 C 1.54106 * 109.87508 * 185.00165 * 21 20 19 24 24 C 1.54813 * 104.18787 * 238.54856 * 23 21 20 25 25 C 1.55004 * 102.12379 * 339.10314 * 24 23 21 26 26 O 1.43741 * 109.88030 * 67.17440 * 21 20 19 27 27 C 1.44544 * 125.32450 * 24.01581 * 16 15 14 28 28 H 1.09000 * 109.64421 * 106.18482 * 27 16 15 29 29 C 1.46869 * 125.36070 * 180.02562 * 9 7 2 30 30 H 0.97000 * 119.99508 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.82302 * 59.31356 * 10 9 7 32 32 H 1.08999 * 109.83067 * 298.35987 * 10 9 7 33 33 H 1.09000 * 109.05292 * 296.34792 * 14 13 11 34 34 H 1.09005 * 109.05728 * 177.44511 * 14 13 11 35 35 H 1.08996 * 108.98981 * 199.05998 * 15 14 13 36 36 H 1.09002 * 108.92218 * 80.27998 * 15 14 13 37 37 H 1.09002 * 109.46575 * 60.00224 * 19 17 16 38 38 H 1.09002 * 109.47216 * 300.00767 * 19 17 16 39 39 H 1.09002 * 109.47332 * 60.00543 * 20 19 17 40 40 H 1.08994 * 109.47418 * 299.99801 * 20 19 17 41 41 H 1.08998 * 110.48801 * 119.87507 * 23 21 20 42 42 H 1.08997 * 110.60127 * 357.27552 * 23 21 20 43 43 H 1.09001 * 110.91056 * 97.31252 * 24 23 21 44 44 H 1.09000 * 110.91053 * 220.88832 * 24 23 21 45 45 H 1.08996 * 110.62037 * 155.54458 * 25 24 23 46 46 H 1.09006 * 110.61690 * 278.54368 * 25 24 23 47 47 H 1.09000 * 110.07041 * 317.00620 * 29 9 7 48 48 H 1.08996 * 110.07402 * 78.47993 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1358 -2.5252 -0.0005 11 6 -0.4629 -4.0289 -0.0304 12 1 -0.7260 -4.3644 0.9727 13 8 -1.5365 -4.2782 -0.9074 14 6 -1.3291 -4.0865 -2.2921 15 6 -0.1712 -4.9259 -2.8061 16 7 0.9382 -4.9469 -1.8733 17 6 2.1615 -5.2130 -2.3725 18 8 3.1306 -5.1973 -1.6434 19 6 2.3253 -5.5302 -3.8367 20 6 3.8020 -5.7917 -4.1398 21 6 3.9682 -6.1130 -5.6265 22 1 3.3052 -6.9322 -5.9049 23 6 5.4309 -6.5005 -5.9184 24 6 5.8912 -5.4719 -6.9800 25 6 4.5421 -4.9822 -7.5653 26 8 3.6691 -4.9488 -6.4146 27 6 0.8386 -4.7115 -0.4507 28 1 0.9519 -5.6538 0.0855 29 6 1.9377 -3.7231 -0.0005 30 1 -0.4849 0.8401 0.0004 31 1 -0.5527 -2.0386 -0.8824 32 1 -0.5495 -2.0748 0.9018 33 1 -1.1153 -3.0338 -2.4775 34 1 -2.2358 -4.3641 -2.8296 35 1 0.1713 -4.5142 -3.7555 36 1 -0.5186 -5.9464 -2.9671 37 1 1.9755 -4.6869 -4.4323 38 1 1.7413 -6.4167 -4.0840 39 1 4.1514 -6.6351 -3.5442 40 1 4.3862 -4.9054 -3.8926 41 1 5.4848 -7.5126 -6.3193 42 1 6.0374 -6.4154 -5.0168 43 1 6.4347 -4.6495 -6.5149 44 1 6.4976 -5.9511 -7.7486 45 1 4.6492 -3.9867 -7.9959 46 1 4.1689 -5.6855 -8.3099 47 1 2.7743 -3.7509 -0.6987 48 1 2.2795 -3.9779 1.0026 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083007531.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:55 Heat of formation + Delta-G solvation = -79.578655 kcal Electronic energy + Delta-G solvation = -29362.423343 eV Core-core repulsion = 25418.859392 eV Total energy + Delta-G solvation = -3943.563951 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.73295 -39.63053 -38.32382 -35.85095 -34.73146 -33.64018 -32.35162 -32.15960 -29.93870 -29.01958 -27.84950 -27.08237 -24.79774 -24.04437 -23.15616 -22.14269 -21.14427 -20.64274 -19.68694 -18.37174 -17.42611 -16.83768 -16.61749 -16.45845 -16.02494 -15.80357 -15.30919 -15.12903 -14.88305 -14.58390 -13.95847 -13.89879 -13.83646 -13.63524 -13.21907 -12.97371 -12.71587 -12.25017 -12.08320 -12.02334 -11.89433 -11.82361 -11.52759 -11.25295 -11.07475 -11.04269 -10.98274 -10.88516 -10.76753 -10.57927 -10.57155 -10.31920 -10.01734 -9.83804 -9.67039 -9.26566 -8.78027 -8.54375 -8.12980 -6.73836 -5.66387 -2.99027 2.90483 3.19352 3.43191 3.48981 3.51746 3.68198 4.14798 4.33364 4.43673 4.54891 4.66821 4.70043 4.85328 4.95326 5.00081 5.08630 5.15091 5.23472 5.28628 5.39166 5.44789 5.45313 5.47417 5.50099 5.55031 5.58721 5.66152 5.72259 5.77235 5.80450 5.85561 5.92669 6.04750 6.06187 6.13976 6.24750 6.35984 6.61559 6.75831 6.90557 7.25962 7.46584 7.56443 7.63222 7.78513 7.95141 8.30571 8.50531 9.27774 9.88255 10.51949 11.45182 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.011492 B = 0.003940 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.864381 B = 7104.457804 C = 8467.602973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.011 4.011 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.220 4.220 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.153 3.847 11 C 0.068 3.932 12 H 0.108 0.892 13 O -0.371 6.371 14 C 0.057 3.943 15 C 0.080 3.920 16 N -0.586 5.586 17 C 0.507 3.493 18 O -0.529 6.529 19 C -0.136 4.136 20 C -0.101 4.101 21 C 0.076 3.924 22 H 0.067 0.933 23 C -0.153 4.153 24 C -0.156 4.156 25 C 0.046 3.954 26 O -0.371 6.371 27 C 0.109 3.891 28 H 0.070 0.930 29 C 0.110 3.890 30 H 0.251 0.749 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.062 0.938 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.091 0.909 46 H 0.058 0.942 47 H 0.087 0.913 48 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.594 -15.602 -14.013 21.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.348 4.348 8 H 0.096 0.904 9 N -0.330 5.330 10 C 0.028 3.972 11 C 0.009 3.991 12 H 0.126 0.874 13 O -0.289 6.289 14 C -0.020 4.020 15 C -0.044 4.044 16 N -0.319 5.319 17 C 0.295 3.705 18 O -0.407 6.407 19 C -0.176 4.176 20 C -0.139 4.139 21 C 0.018 3.982 22 H 0.085 0.915 23 C -0.190 4.190 24 C -0.194 4.194 25 C -0.031 4.031 26 O -0.290 6.290 27 C 0.005 3.995 28 H 0.088 0.912 29 C -0.016 4.016 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.120 0.880 35 H 0.101 0.899 36 H 0.081 0.919 37 H 0.117 0.883 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.110 0.890 46 H 0.076 0.924 47 H 0.105 0.895 48 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 3.675 -15.266 -13.473 20.690 hybrid contribution 0.682 0.862 -0.201 1.117 sum 4.357 -14.404 -13.674 20.333 Atomic orbital electron populations 1.69964 1.04801 1.24778 1.57763 1.24782 0.95730 0.97584 1.02527 0.86042 0.78795 0.83814 0.77171 1.20516 1.21852 1.21771 1.19115 0.90504 0.82249 1.42922 0.90382 1.44243 1.01111 1.00322 1.87296 1.21658 0.85289 0.88085 1.02181 1.22988 0.84829 0.98647 0.92612 0.87385 1.86857 1.37266 1.89021 1.15706 1.22221 0.97235 0.99773 0.82758 1.21635 0.88806 1.00833 0.93149 1.46626 1.07585 1.69912 1.07816 1.20702 0.82544 0.76839 0.90366 1.90590 1.38718 1.50788 1.60584 1.21686 0.98813 1.03606 0.93498 1.21543 0.95599 1.03776 0.92966 1.22812 0.95070 0.88226 0.92066 0.91469 1.23002 0.96381 0.99495 1.00155 1.23136 0.98221 0.99452 0.98590 1.23548 0.88589 1.01815 0.89157 1.88945 1.60221 1.44410 1.35437 1.21805 0.98815 0.98759 0.80142 0.91209 1.22164 0.95930 0.84487 0.99027 0.93892 0.92664 0.93131 0.92014 0.88035 0.89869 0.91942 0.88319 0.89395 0.90061 0.90168 0.90775 0.90004 0.90352 0.90433 0.89041 0.92371 0.89537 0.95942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.68 10.26 55.49 0.57 -27.11 16 2 C -0.01 -0.31 5.48 -17.43 -0.10 -0.40 16 3 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 7 C -0.22 -6.41 10.25 -15.06 -0.15 -6.56 16 8 H 0.08 2.25 7.83 -52.48 -0.41 1.84 16 9 N -0.60 -16.14 3.39 -171.22 -0.58 -16.72 16 10 C 0.15 3.83 5.02 -3.42 -0.02 3.81 16 11 C 0.07 1.36 3.82 -26.33 -0.10 1.26 16 12 H 0.11 1.98 8.14 -51.93 -0.42 1.56 16 13 O -0.37 -6.79 10.24 -34.45 -0.35 -7.14 16 14 C 0.06 0.88 6.72 36.63 0.25 1.13 16 15 C 0.08 1.09 5.87 -5.39 -0.03 1.06 16 16 N -0.59 -10.07 3.08 -168.52 -0.52 -10.59 16 17 C 0.51 8.62 7.14 -10.98 -0.08 8.54 16 18 O -0.53 -10.64 12.87 5.56 0.07 -10.57 16 19 C -0.14 -1.72 4.17 -27.88 -0.12 -1.84 16 20 C -0.10 -1.21 3.99 -26.73 -0.11 -1.32 16 21 C 0.08 0.76 3.41 -26.15 -0.09 0.67 16 22 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 23 C -0.15 -1.25 6.64 -25.20 -0.17 -1.41 16 24 C -0.16 -1.20 7.15 -24.72 -0.18 -1.38 16 25 C 0.05 0.39 7.73 38.22 0.30 0.69 16 26 O -0.37 -4.40 10.84 -35.23 -0.38 -4.78 16 27 C 0.11 2.12 3.45 -68.25 -0.24 1.89 16 28 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 29 C 0.11 2.55 6.29 -3.04 -0.02 2.53 16 30 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.06 1.52 5.74 -51.93 -0.30 1.22 16 32 H 0.05 1.40 7.48 -51.93 -0.39 1.01 16 33 H 0.06 1.11 6.81 -51.93 -0.35 0.76 16 34 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.08 1.01 6.31 -51.93 -0.33 0.68 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.10 1.28 6.91 -51.93 -0.36 0.92 16 38 H 0.09 0.88 8.07 -51.93 -0.42 0.46 16 39 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 40 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.69 7.70 -51.93 -0.40 0.29 16 43 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.09 2.15 4.81 -52.40 -0.25 1.90 16 48 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 364.45 15.07 5.49 5.49 Total: -1.00 -34.20 364.45 -9.41 -43.61 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -7.84 Total: 1.32 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: -0.85 Total: 8.66 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -0.53 Total: -54.42 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.66 Total: -22.48 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.20 -9.41 -43.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083007531.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.971 kcal (2) G-P(sol) polarization free energy of solvation -34.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds