Wall clock time and date at job start Tue Mar 31 2020 13:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 120.00350 * 2 1 4 4 H 1.48497 * 109.47175 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46910 * 300.00025 * 3 2 1 6 6 H 1.48500 * 109.46772 * 60.00047 * 3 2 1 7 7 C 1.38818 * 119.99747 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99884 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00020 * 359.97438 * 7 2 1 10 10 C 1.46772 * 125.36102 * 0.02562 * 9 7 2 11 11 C 1.53913 * 107.62499 * 178.83233 * 10 9 7 12 12 H 1.09001 * 109.52243 * 100.77529 * 11 10 9 13 13 O 1.40853 * 110.30321 * 221.41219 * 11 10 9 14 14 C 1.41321 * 118.30708 * 68.00672 * 13 11 10 15 15 C 1.51963 * 111.61096 * 56.89886 * 14 13 11 16 16 N 1.44965 * 111.93220 * 319.69408 * 15 14 13 17 17 C 1.34776 * 117.33539 * 203.73095 * 16 15 14 18 18 O 1.21281 * 119.99936 * 177.45904 * 17 16 15 19 19 C 1.50702 * 120.00173 * 357.45378 * 17 16 15 20 20 C 1.52999 * 109.47119 * 180.02562 * 19 17 16 21 21 C 1.53004 * 109.46671 * 180.02562 * 20 19 17 22 22 H 1.08994 * 109.87366 * 306.00643 * 21 20 19 23 23 C 1.54106 * 109.87508 * 185.00165 * 21 20 19 24 24 C 1.54813 * 104.18787 * 238.54856 * 23 21 20 25 25 C 1.55004 * 102.12379 * 339.10314 * 24 23 21 26 26 O 1.43741 * 109.88030 * 67.17440 * 21 20 19 27 27 C 1.44544 * 125.32450 * 24.01581 * 16 15 14 28 28 H 1.09000 * 109.64421 * 106.18482 * 27 16 15 29 29 C 1.46869 * 125.36070 * 180.02562 * 9 7 2 30 30 H 0.97000 * 119.99508 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.82302 * 59.31356 * 10 9 7 32 32 H 1.08999 * 109.83067 * 298.35987 * 10 9 7 33 33 H 1.09000 * 109.05292 * 296.34792 * 14 13 11 34 34 H 1.09005 * 109.05728 * 177.44511 * 14 13 11 35 35 H 1.08996 * 108.98981 * 199.05998 * 15 14 13 36 36 H 1.09002 * 108.92218 * 80.27998 * 15 14 13 37 37 H 1.09002 * 109.46575 * 60.00224 * 19 17 16 38 38 H 1.09002 * 109.47216 * 300.00767 * 19 17 16 39 39 H 1.09002 * 109.47332 * 60.00543 * 20 19 17 40 40 H 1.08994 * 109.47418 * 299.99801 * 20 19 17 41 41 H 1.08998 * 110.48801 * 119.87507 * 23 21 20 42 42 H 1.08997 * 110.60127 * 357.27552 * 23 21 20 43 43 H 1.09001 * 110.91056 * 97.31252 * 24 23 21 44 44 H 1.09000 * 110.91053 * 220.88832 * 24 23 21 45 45 H 1.08996 * 110.62037 * 155.54458 * 25 24 23 46 46 H 1.09006 * 110.61690 * 278.54368 * 25 24 23 47 47 H 1.09000 * 110.07041 * 317.00620 * 29 9 7 48 48 H 1.08996 * 110.07402 * 78.47993 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1358 -2.5252 -0.0005 11 6 -0.4629 -4.0289 -0.0304 12 1 -0.7260 -4.3644 0.9727 13 8 -1.5365 -4.2782 -0.9074 14 6 -1.3291 -4.0865 -2.2921 15 6 -0.1712 -4.9259 -2.8061 16 7 0.9382 -4.9469 -1.8733 17 6 2.1615 -5.2130 -2.3725 18 8 3.1306 -5.1973 -1.6434 19 6 2.3253 -5.5302 -3.8367 20 6 3.8020 -5.7917 -4.1398 21 6 3.9682 -6.1130 -5.6265 22 1 3.3052 -6.9322 -5.9049 23 6 5.4309 -6.5005 -5.9184 24 6 5.8912 -5.4719 -6.9800 25 6 4.5421 -4.9822 -7.5653 26 8 3.6691 -4.9488 -6.4146 27 6 0.8386 -4.7115 -0.4507 28 1 0.9519 -5.6538 0.0855 29 6 1.9377 -3.7231 -0.0005 30 1 -0.4849 0.8401 0.0004 31 1 -0.5527 -2.0386 -0.8824 32 1 -0.5495 -2.0748 0.9018 33 1 -1.1153 -3.0338 -2.4775 34 1 -2.2358 -4.3641 -2.8296 35 1 0.1713 -4.5142 -3.7555 36 1 -0.5186 -5.9464 -2.9671 37 1 1.9755 -4.6869 -4.4323 38 1 1.7413 -6.4167 -4.0840 39 1 4.1514 -6.6351 -3.5442 40 1 4.3862 -4.9054 -3.8926 41 1 5.4848 -7.5126 -6.3193 42 1 6.0374 -6.4154 -5.0168 43 1 6.4347 -4.6495 -6.5149 44 1 6.4976 -5.9511 -7.7486 45 1 4.6492 -3.9867 -7.9959 46 1 4.1689 -5.6855 -8.3099 47 1 2.7743 -3.7509 -0.6987 48 1 2.2795 -3.9779 1.0026 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083007531.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:54 Heat of formation + Delta-G solvation = -103.585598 kcal Electronic energy + Delta-G solvation = -29363.464362 eV Core-core repulsion = 25418.859392 eV Total energy + Delta-G solvation = -3944.604970 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.15272 -40.44122 -39.70526 -37.63730 -36.12046 -34.80956 -34.08456 -32.93829 -31.69165 -30.04670 -29.54467 -28.57212 -26.60338 -25.21331 -24.55847 -23.01873 -22.39920 -21.74377 -21.23715 -19.81924 -19.14316 -18.23614 -18.16779 -17.43529 -17.01655 -16.92482 -16.77744 -16.34745 -16.23257 -16.06769 -15.69878 -15.27909 -15.15045 -14.63121 -14.47588 -14.31934 -13.86635 -13.82552 -13.69635 -13.40743 -13.08406 -13.00702 -12.86281 -12.69062 -12.57282 -12.47134 -12.24919 -12.16932 -12.10763 -11.89431 -11.82426 -11.77421 -11.64478 -11.48501 -10.84416 -10.76197 -10.58103 -10.26385 -9.52704 -8.91128 -7.90308 -5.26318 1.40229 1.41397 1.52384 1.59743 1.89712 2.43829 2.76171 2.98646 3.27138 3.32811 3.60049 3.70057 3.70606 3.74864 3.84602 3.96027 4.05748 4.09347 4.11208 4.16394 4.24045 4.38176 4.39251 4.45521 4.46916 4.56178 4.61051 4.70441 4.79278 4.82186 4.84776 4.87502 4.97335 5.01806 5.07800 5.11062 5.13343 5.21163 5.33255 5.37280 5.45725 5.61861 5.67386 6.05352 6.14096 6.28126 6.42794 7.05011 7.18596 7.71619 8.33557 9.19122 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.011492 B = 0.003940 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.864381 B = 7104.457804 C = 8467.602973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.060 4.060 3 Si 0.978 3.022 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.620 5.620 10 C 0.164 3.836 11 C 0.084 3.916 12 H 0.126 0.874 13 O -0.372 6.372 14 C 0.050 3.950 15 C 0.076 3.924 16 N -0.594 5.594 17 C 0.498 3.502 18 O -0.569 6.569 19 C -0.124 4.124 20 C -0.098 4.098 21 C 0.077 3.923 22 H 0.090 0.910 23 C -0.153 4.153 24 C -0.155 4.155 25 C 0.039 3.961 26 O -0.402 6.402 27 C 0.121 3.879 28 H 0.092 0.908 29 C 0.107 3.893 30 H 0.248 0.752 31 H 0.024 0.976 32 H 0.014 0.986 33 H 0.024 0.976 34 H 0.147 0.853 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.127 0.873 39 H 0.084 0.916 40 H 0.044 0.956 41 H 0.097 0.903 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.100 0.900 45 H 0.092 0.908 46 H 0.078 0.922 47 H 0.071 0.929 48 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.288 -17.767 -16.121 24.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.253 4.253 3 Si 0.806 3.194 4 H -0.196 1.196 5 H -0.215 1.215 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.347 5.347 10 C 0.039 3.961 11 C 0.025 3.975 12 H 0.144 0.856 13 O -0.289 6.289 14 C -0.026 4.026 15 C -0.046 4.046 16 N -0.327 5.327 17 C 0.289 3.711 18 O -0.449 6.449 19 C -0.164 4.164 20 C -0.136 4.136 21 C 0.020 3.980 22 H 0.108 0.892 23 C -0.190 4.190 24 C -0.193 4.193 25 C -0.037 4.037 26 O -0.322 6.322 27 C 0.016 3.984 28 H 0.110 0.890 29 C -0.018 4.018 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.032 0.968 33 H 0.043 0.957 34 H 0.165 0.835 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.115 0.885 38 H 0.145 0.855 39 H 0.102 0.898 40 H 0.063 0.937 41 H 0.116 0.884 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.119 0.881 45 H 0.111 0.889 46 H 0.096 0.904 47 H 0.089 0.911 48 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 3.359 -17.457 -15.608 23.657 hybrid contribution 0.783 1.567 0.428 1.803 sum 4.142 -15.890 -15.180 22.363 Atomic orbital electron populations 1.70180 1.06068 1.25270 1.58109 1.25606 0.96681 1.00767 1.02266 0.85018 0.77927 0.79378 0.77064 1.19611 1.21478 1.21321 1.19378 0.90621 0.83816 1.43425 0.91076 1.44483 1.02073 1.01050 1.87097 1.21410 0.84141 0.91681 0.98880 1.22708 0.85800 0.94712 0.94325 0.85631 1.86867 1.36442 1.88504 1.17088 1.22535 1.00225 0.98252 0.81591 1.21929 0.87033 1.02995 0.92686 1.46823 1.08938 1.69642 1.07283 1.21531 0.81815 0.75812 0.91977 1.90568 1.39897 1.52498 1.61922 1.21702 0.99756 1.05062 0.89841 1.21503 0.94775 1.02306 0.94987 1.22872 0.96712 0.88251 0.90171 0.89208 1.23029 0.95106 1.00825 1.00057 1.23142 0.98043 0.99093 0.98979 1.23744 0.88588 1.02625 0.88722 1.88905 1.61180 1.45438 1.36660 1.21562 0.96389 0.98245 0.82238 0.89036 1.22229 0.96963 0.84129 0.98517 0.94237 0.95764 0.96830 0.95714 0.83527 0.88155 0.87687 0.88484 0.85494 0.89750 0.93674 0.88442 0.90917 0.91748 0.88136 0.88937 0.90428 0.91123 0.96457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.73 10.26 21.65 0.22 -58.51 16 2 C -0.06 -3.59 5.48 84.86 0.47 -3.12 16 3 Si 0.98 48.09 29.55 68.60 2.03 50.12 16 4 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 7 C -0.24 -14.77 10.25 84.04 0.86 -13.91 16 8 H 0.07 4.28 7.83 -2.91 -0.02 4.26 16 9 N -0.62 -34.59 3.39 -695.61 -2.36 -36.95 16 10 C 0.16 8.56 5.02 86.64 0.43 8.99 16 11 C 0.08 3.32 3.82 30.85 0.12 3.44 16 12 H 0.13 4.50 8.14 -2.39 -0.02 4.48 16 13 O -0.37 -13.03 10.24 -146.19 -1.50 -14.53 16 14 C 0.05 1.45 6.72 71.64 0.48 1.93 16 15 C 0.08 1.84 5.87 86.33 0.51 2.35 16 16 N -0.59 -19.50 3.08 -805.48 -2.48 -21.98 16 17 C 0.50 16.48 7.14 87.66 0.63 17.10 16 18 O -0.57 -23.20 12.87 -3.03 -0.04 -23.24 16 19 C -0.12 -2.88 4.17 29.85 0.12 -2.76 16 20 C -0.10 -2.27 3.99 30.60 0.12 -2.14 16 21 C 0.08 1.38 3.41 30.97 0.11 1.49 16 22 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 23 C -0.15 -2.19 6.64 31.59 0.21 -1.98 16 24 C -0.15 -2.12 7.15 31.90 0.23 -1.89 16 25 C 0.04 0.60 7.73 72.67 0.56 1.17 16 26 O -0.40 -8.93 10.84 -148.98 -1.62 -10.55 16 27 C 0.12 4.62 3.45 45.83 0.16 4.78 16 28 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 29 C 0.11 5.12 6.29 86.83 0.55 5.66 16 30 H 0.25 14.86 8.31 -92.71 -0.77 14.08 16 31 H 0.02 1.40 5.74 -2.38 -0.01 1.39 16 32 H 0.01 0.79 7.48 -2.39 -0.02 0.77 16 33 H 0.02 0.89 6.81 -2.39 -0.02 0.88 16 34 H 0.15 2.87 8.14 -2.38 -0.02 2.85 16 35 H 0.10 2.12 6.31 -2.39 -0.02 2.11 16 36 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.10 2.34 6.91 -2.39 -0.02 2.33 16 38 H 0.13 1.97 8.07 -2.39 -0.02 1.95 16 39 H 0.08 1.87 8.10 -2.39 -0.02 1.85 16 40 H 0.04 1.34 8.10 -2.39 -0.02 1.32 16 41 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.07 1.17 7.70 -2.39 -0.02 1.15 16 43 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 47 H 0.07 3.66 4.81 -9.85 -0.05 3.62 16 48 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -78.78 364.45 0.72 -78.06 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.91 Total: 16.47 kcal Atomic # 6 Polarization: 15.56 SS G_CDS: 5.55 Total: 21.11 kcal Atomic # 7 Polarization: -112.82 SS G_CDS: -4.62 Total: -117.44 kcal Atomic # 8 Polarization: -45.17 SS G_CDS: -3.15 Total: -48.32 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal Total: -78.78 0.72 -78.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083007531.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.530 kcal (2) G-P(sol) polarization free energy of solvation -78.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds